>emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chromosome 6q16.3-21 Contains
              two novel genes, the 3' end of the C6orf210 gene for
              chromosome 6 open reading frame 210 and three CpG islands,
              complete sequence
          Length = 185311

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 86     cagtcctcctccctacctccctccgccc 113
              |||||||||||||| |||||||||||||
Sbjct: 125862 cagtcctcctcccttcctccctccgccc 125835

>gb|AC166050.3| Mus musculus BAC clone RP24-138A17 from chromosome 9, complete sequence
          Length = 142457

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   ccgactcccctccccgcccag 155
             |||||||||||||||||||||
Sbjct: 95232 ccgactcccctccccgcccag 95212

>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 141    cccctccccgcccagacacgc 161
              |||||||||||||||||||||
Sbjct: 347167 cccctccccgcccagacacgc 347147

>gb|AC159432.1| Trypanosoma brucei chromosome 5 clone RPCI93-28F8, complete sequence
          Length = 140539

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   cccctccccgcccagacacgc 161
             |||||||||||||||||||||
Sbjct: 46359 cccctccccgcccagacacgc 46379

>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 102     ctccctccgcccctggcccat 122
               |||||||||||||||||||||
Sbjct: 2159559 ctccctccgcccctggcccat 2159579

>gb|AE008919.1| Uncultured proteobacterium BAC EBAC000-65D09 complete sequence
          Length = 86564

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   ggagaattccttcattggtcg 204
             |||||||||||||||||||||
Sbjct: 46990 ggagaattccttcattggtcg 47010

>gb|AY458648.2| Uncultured bacterium 581 clone EBAC000-69B03 genomic sequence
          Length = 82232

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   ggagaattccttcattggtcg 204
             |||||||||||||||||||||
Sbjct: 28001 ggagaattccttcattggtcg 28021

>ref|XM_819279.1| Trypanosoma brucei TREU927 clone RPCI93-28F8 hypothetical protein
           (Tb927.5.1070) partial mRNA
          Length = 2748

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 141 cccctccccgcccagacacgc 161
           |||||||||||||||||||||
Sbjct: 924 cccctccccgcccagacacgc 904

>gb|AY105392.1| Zea mays PCO075454 mRNA sequence
          Length = 1461

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 202 tcgccgcctcttcctcatcctcccg 226
           |||||||| ||||||||||||||||
Sbjct: 82  tcgccgccgcttcctcatcctcccg 106

>gb|U34291.1|MMU34291 Mus musculus amyloid precursor-like protein 2 (APLP2) gene, partial
           cds
          Length = 1460

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 ccgactcccctccccgcccag 155
           |||||||||||||||||||||
Sbjct: 993 ccgactcccctccccgcccag 973

>emb|CT025678.6| Mouse DNA sequence from clone RP24-153A6 on chromosome 9, complete
             sequence
          Length = 175790

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   ccgactcccctccccgcccag 155
             |||||||||||||||||||||
Sbjct: 88303 ccgactcccctccccgcccag 88283

>gb|U37468.1|MMCDEBP01 Mus musculus CDE1-binding protein CDEBP (Cdebp) gene, exon 1
          Length = 620

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 ccgactcccctccccgcccag 155
           |||||||||||||||||||||
Sbjct: 249 ccgactcccctccccgcccag 229

>gb|AC024755.1| Caenorhabditis elegans cosmid Y34B4A, complete sequence
          Length = 48662

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   tcctcctccctacctccctc 108
            ||||||||||||||||||||
Sbjct: 7383 tcctcctccctacctccctc 7402

>ref|XM_593729.2| PREDICTED: Bos taurus similar to phospholipase C, beta 3
            (phosphatidylinositol-specific) (LOC515669), mRNA
          Length = 4822

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  cctcttcctcatcctcccgg 227
            ||||||||||||||||||||
Sbjct: 1591 cctcttcctcatcctcccgg 1572

>gb|AC117596.6| Mus musculus chromosome 6, clone RP23-392K24, complete sequence
          Length = 233811

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    tccctacctccctccgcccc 114
             ||||||||||||||||||||
Sbjct: 82633 tccctacctccctccgcccc 82614

>gb|AC144699.1| Homo sapiens chromosome 8, clone XXfos-81263D2, complete sequence
          Length = 40756

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    cctcctccctacctccctccgccc 113
             |||||||||| |||||||||||||
Sbjct: 16526 cctcctccctccctccctccgccc 16503

>emb|AL009031.1|HS467D16 Human DNA sequence from clone RP3-467D16 on chromosome 6p22.3-24.1
              Contains the 5' end of the SCA1 gene for spinocerebellar
              ataxia 1 (olivopontocerebellar ataxia 1, autosomal
              dominant, ataxin 1) with a poly-glutamine (CAG repeat)
              polymorphism and the 3' part of the GMPR gene for GMP
              reductase, Guanosine 5'-monophosphate oxidoreductase,
              complete sequence
          Length = 143583

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     caagaacccaccagttccga 70
              ||||||||||||||||||||
Sbjct: 110581 caagaacccaccagttccga 110562

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     cgccgcctcttcctcatcct 222
               ||||||||||||||||||||
Sbjct: 3967591 cgccgcctcttcctcatcct 3967610

>emb|AL662993.3|OSJN00195 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015G09,
              complete sequence
          Length = 123375

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    gtcgccgcctcttcctcatc 220
              ||||||||||||||||||||
Sbjct: 119024 gtcgccgcctcttcctcatc 119043

>emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0071D01,
             complete sequence
          Length = 78794

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   gtcgccgcctcttcctcatc 220
             ||||||||||||||||||||
Sbjct: 38218 gtcgccgcctcttcctcatc 38237

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     gtcgccgcctcttcctcatc 220
               ||||||||||||||||||||
Sbjct: 8505649 gtcgccgcctcttcctcatc 8505668

>gb|AC002326.1|AC002326 Genomic sequence from Human 6, complete sequence
          Length = 148750

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     caagaacccaccagttccga 70
              ||||||||||||||||||||
Sbjct: 120835 caagaacccaccagttccga 120816

>emb|AL137190.5|CNS01DWG Human chromosome 14 DNA sequence BAC R-241N4 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155742

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    cctcctccctacctccctcc 109
             ||||||||||||||||||||
Sbjct: 45696 cctcctccctacctccctcc 45677



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    cctcctccctacctccctcc 109
             ||||||||||||||||||||
Sbjct: 45681 cctcctccctacctccctcc 45662

>gb|M73768.1|ECCU1SNRNA E.multilocularis U1 small nuclear RNA gene
          Length = 1303

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  cctccctacctccctccgcc 112
           ||||||||||||||||||||
Sbjct: 538 cctccctacctccctccgcc 557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,809,883
Number of Sequences: 3902068
Number of extensions: 1809883
Number of successful extensions: 43907
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43831
Number of HSP's gapped (non-prelim): 76
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)