ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31f11 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 133 bits (335), Expect = 2e-31 Identities = 68/72 (94%), Positives = 68/72 (94%) Frame = +2 Query: 212 MLPRKREIVAGEVEDLQKKTCAGEGETAREEGDAAMARRGNEIDEDLHSRQLAVYGRETM 391 MLPRKREIVAGEVEDLQKKT AGEGE REEGDAAMA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 392 KRLFGSNVLVSG 427 KRLFGSNVLVSG Sbjct: 61 KRLFGSNVLVSG 72
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 130 bits (328), Expect = 1e-30 Identities = 67/72 (93%), Positives = 67/72 (93%) Frame = +2 Query: 212 MLPRKREIVAGEVEDLQKKTCAGEGETAREEGDAAMARRGNEIDEDLHSRQLAVYGRETM 391 MLPRKREIVAGEVEDLQKKT AGEGE REEGDAAMA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 392 KRLFGSNVLVSG 427 K LFGSNVLVSG Sbjct: 61 KPLFGSNVLVSG 72
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 62.8 bits (151), Expect = 3e-10 Identities = 38/75 (50%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Frame = +2 Query: 212 MLPRKREIVAGEVEDLQKKTCA---GEGETAREEGDAAMARRGNEIDEDLHSRQLAVYGR 382 MLP KR A ++ + A G G A+ EIDEDLHSRQLAVYGR Sbjct: 1 MLPSKRPSDAAAGDENGRGGDARGPGSGRRRARAAAGAVTAAPQEIDEDLHSRQLAVYGR 60 Query: 383 ETMKRLFGSNVLVSG 427 ETM+RLF S+VLVSG Sbjct: 61 ETMRRLFASDVLVSG 75
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 43.5 bits (101), Expect = 2e-04 Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%) Frame = +2 Query: 317 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSG 427 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSG Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSG 79
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 43.5 bits (101), Expect = 2e-04 Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%) Frame = +2 Query: 317 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSG 427 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSG Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSG 79
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 41.6 bits (96), Expect = 8e-04 Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 2/39 (5%) Frame = +2 Query: 317 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSG 427 MA+ G+E IDE L+SRQL V G E MK L S+VLVSG Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSG 79
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 332 NEIDEDLHSRQLAVYGRETMKRLFGSNVLVSG 427 N IDE L+SRQL V G E MK++ SNVL+ G Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIG 44
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 37.4 bits (85), Expect = 0.015 Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = +2 Query: 335 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSG 427 EIDE L+SRQL V G+E M ++ SNVL+ G Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLILG 43
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 36.6 bits (83), Expect = 0.025 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +2 Query: 338 IDEDLHSRQLAVYGRETMKRLFGSNVLVSG 427 +DE+L+SRQL V G M+R+ G+ VLVSG Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVSG 39
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -1 Query: 400 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>PPAN_ARATH (Q9ASU7) Peter Pan-like protein| Length = 345 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +2 Query: 236 VAGEVEDLQKKTCAGEGETAREEGDAAMARRGNEIDED 349 V G+ E L+KK E E + EEG+ G ++DED Sbjct: 305 VDGKKEKLKKKQDEEEEEDSEEEGEEGSEEDGEDMDED 342
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 4.0 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 349 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 4.0 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 394 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.0 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 400 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.0 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 400 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -1 Query: 349 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>RPOB_PINTH (P41607) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 305 GDAAMARRGNEIDEDLHSRQLAVYGRETMKRLFGSN 412 G A M++ +++DE +H+R Y R T + L G + Sbjct: 948 GKAYMSKLSHQVDEKIHARSSGPYARVTQQPLRGKS 983
>RPOB_PINKO (Q85X54) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 305 GDAAMARRGNEIDEDLHSRQLAVYGRETMKRLFGSN 412 G A M++ +++DE +H+R Y R T + L G + Sbjct: 948 GKAYMSKLSHQVDEKIHARSSGPYARVTQQPLRGKS 983
>LON_MYCGE (P47481) ATP-dependent protease La (EC 3.4.21.53)| Length = 795 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +2 Query: 221 RKREIVAGEVEDLQKKTCAGEGETAREEGDAAMARRGNEIDEDLHSRQLAVYGRETMK 394 R +I+ +EDLQK G + E D ++ +I+E L +Q Y RE ++ Sbjct: 201 RLEKIIQAGIEDLQKIQDYGRSKNKETEFDKLDSKITRKINEQLSRQQRDFYLREKLR 258
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 349 PAQSPARRLWPRDHEA 396 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 349 PAQSPARRLWPRDHEA 396 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 573 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +3 Query: 3 CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 140 C V+ ++ P R + LP+ ++ P R W+ R SRR Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245
>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking| family 7) Length = 5327 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +2 Query: 230 EIVAGEVEDLQKKTCA-GEGETAREEGDAAMARRGNEID 343 E+ G VED +K A + TA EEG+A G E+D Sbjct: 3161 ELTLGRVEDFYRKLKALNDAATAAEEGEALQWIVGTEVD 3199
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 394 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 78 VASGKEAGEGRSV*GFWDGTGGPD 7 V +GK G+G++V GF DGT D Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384
>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)| Length = 4684 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 251 EDLQKKTCA-GEGETAREEGDAAMARRGNEIDEDLHSRQLAVYGRETMKRL 400 E LQ+K+ A E E +EE + RRG ++ + R+LA E ++L Sbjct: 1787 EVLQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQL 1837
>CP2DQ_MOUSE (Q8CIM7) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26)| Length = 500 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 349 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 +LVDLV + PG +P PG G LLQV Sbjct: 21 LLVDLVHRRQRWTACYPPGPVPFPGLGNLLQV 52
>CP2DG_CAVPO (Q64403) Cytochrome P450 2D16 (EC 1.14.14.1) (CYPIID16)| Length = 500 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 364 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 +A +LVDL+ + PG +P+PG G LLQV Sbjct: 16 VAIFLLLVDLMHRRQRWAARYPPGPVPVPGLGNLLQV 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,885,279 Number of Sequences: 219361 Number of extensions: 844081 Number of successful extensions: 3742 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3741 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
