ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31f10 |
|---|---|
| Clone Library Name | barley_pub |
>NOP14_HUMAN (P78316) Probable nucleolar complex protein 14| Length = 857 Score = 59.7 bits (143), Expect = 3e-09 Identities = 29/62 (46%), Positives = 42/62 (67%) Frame = +3 Query: 231 SNPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRI 410 SNPFE +R+KF +LG+K + + SR+ A+ KR TLLKE+++ KS+VF D+R Sbjct: 29 SNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRF 88 Query: 411 GE 416 GE Sbjct: 89 GE 90
>NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14| Length = 860 Score = 58.2 bits (139), Expect = 8e-09 Identities = 28/61 (45%), Positives = 41/61 (67%) Frame = +3 Query: 234 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 413 NPFE +R+KF +LG+K + + SR+ A+ KR TLLKE+++ KS+VF D+R G Sbjct: 30 NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYKERNKSNVFADKRFG 89 Query: 414 E 416 E Sbjct: 90 E 90
>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14| Length = 827 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = +3 Query: 234 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 413 N F+ +++RKFDV G++ KG E + SR R T+ E ++ +S DRR G Sbjct: 52 NLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFG 111 Query: 414 E 416 E Sbjct: 112 E 112
>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14| Length = 832 Score = 31.6 bits (70), Expect = 0.80 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = +3 Query: 225 ERSNPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDR 404 ++ NPF+ +R+K D+ G+ +G R S+ R E + + DR Sbjct: 50 QQFNPFDVKVARKKHDIGGRTVRGSVGRPGLSKLSGEEARMEARKLELQNKGRVGGVFDR 109 Query: 405 RIGE 416 R GE Sbjct: 110 RFGE 113
>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein| 4.2) (Ultrahigh sulfur keratin-associated protein 4.2) Length = 136 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -1 Query: 351 CSPSCGQRRSGSGRCASPRPCASCRARRTCGA 256 C PSCGQ C P C S R TC + Sbjct: 101 CRPSCGQTTCCRTTCYRPSCCVSTCCRPTCSS 132
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -1 Query: 405 AGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTC 262 A RR R A C P C QR + A+ CA C++ TC Sbjct: 469 AACSRRGRGRGALKSPEECPPLCSQRLTCEDCLANSSQCAWCQSTHTC 516
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = +3 Query: 255 SRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIGER 419 S R+ KK + +E+R S+ R + HKR + +F + S F G R Sbjct: 99 SHRRLKRKRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKGHR 153
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -1 Query: 378 RSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTCGATR 250 R+ R P GC P+ +R S G A P PC R G R Sbjct: 168 RAVRRP-CGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGR 209
>MS87F_DROME (P08175) Male-specific sperm protein Mst87F| Length = 56 Score = 28.9 bits (63), Expect = 5.2 Identities = 12/31 (38%), Positives = 12/31 (38%) Frame = -1 Query: 351 CSPSCGQRRSGSGRCASPRPCASCRARRTCG 259 C CG G G C P C C A CG Sbjct: 17 CCGPCGPCGGGCGPCYGPNVCGPCYACGPCG 47
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = -1 Query: 351 CSPSCGQRRSGSGRCASPR-PCASCRARRTCGATRW 247 C + G RRS S C PR P +C AR G W Sbjct: 2962 CDLARGYRRSRSRGCCPPRCPTPACAARTATGPGSW 2997
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 25.0 bits (53), Expect(2) = 6.4 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 402 GHGRRTTWRSARTP*AGCSPSCGQRRSGSGR 310 G GRR +WR R G + + G R G GR Sbjct: 564 GRGRRGSWRGGRR--GGGAGASGGGRGGRGR 592 Score = 21.9 bits (45), Expect(2) = 6.4 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 5/28 (17%) Frame = -2 Query: 257 RPDGLEGV-----APLRRRGPARLHGHG 189 R GL G +P RRG R GHG Sbjct: 598 RGSGLSGTREDAGSPSARRGEQRRRGHG 625
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -1 Query: 405 AGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTC 262 A RR R A C P C QR + A+ CA C++ TC Sbjct: 469 AACSRRGRGRGALKNPEECPPLCSQRLTCEDCLANSSQCAWCQSTHTC 516
>CH10_BRUSU (P0A343) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 233 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 394 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>CH10_BRUME (P0A342) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 233 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 394 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>CH10_BRUAB (P0A344) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 233 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 394 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>Y1934_MYCBO (Q7TZB9) UPF0189 protein Mb1934c| Length = 358 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -1 Query: 381 WRSARTP*AGCSPSCGQ--RRSGSGRCASPRPCASCR 277 WR AR CG+ RRS + R ASPRP ++CR Sbjct: 152 WRRARVR------LCGRWWRRSNTTRGASPRPPSTCR 182
>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)| Length = 182 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = -1 Query: 354 GCSPSCGQRRSGSGRC-ASPRPCASCRARRTCGAT 253 GC SCG + G G C S C SC CG++ Sbjct: 54 GCGSSCGGSKGGCGSCGGSKGGCGSCGG---CGSS 85
>Y1899_MYCTU (O07733) UPF0189 protein Rv1899c/MT1950| Length = 359 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -1 Query: 381 WRSARTP*AGCSPSCGQ--RRSGSGRCASPRPCASCR 277 WR AR CG+ RRS + R ASPRP ++CR Sbjct: 153 WRRARVR------LCGRWWRRSNTTRGASPRPPSTCR 183
>LCR3_ARATH (P82718) Putative low-molecular-weight cysteine-rich protein LCR3| precursor Length = 78 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -1 Query: 351 CSPSCGQRRSGSGRCASPRPC 289 C+ C Q+R G GRC PC Sbjct: 45 CNALCLQKRKGLGRCVQRTPC 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.120 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,548,053 Number of Sequences: 219361 Number of extensions: 461570 Number of successful extensions: 1805 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1799 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
