ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184796.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2859 Score = 230 bits (116), Expect = 3e-57 Identities = 170/188 (90%) Strand = Plus / Plus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 168 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 227 Query: 293 gggcgaggagaggcgcacctcccgctcccgctccgacgctgtccacaagagggagaacac 352 ||| |||||| | |||| | |||| ||||||| || || ||||||||||||||||||| Sbjct: 228 gggggaggagcgccgcatcggccgcgcccgctctgaggccatccacaagagggagaacac 287 Query: 353 cctgctcaaggagttcgagcagagcgccaagtcgtccgtcttccatgaccggcgcatcgg 412 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct: 288 tctgctcaaggagttcgagcagagcgccaagtcgtccgtgttccaggaccggcggatcgg 347 Query: 413 cgagaggg 420 ||||||| Sbjct: 348 ggagaggg 355 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 169 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 225 |||||| |||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct: 83 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 139
>dbj|AK068322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150A21, full insert sequence Length = 3259 Score = 230 bits (116), Expect = 3e-57 Identities = 170/188 (90%) Strand = Plus / Plus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 104 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 163 Query: 293 gggcgaggagaggcgcacctcccgctcccgctccgacgctgtccacaagagggagaacac 352 ||| |||||| | |||| | |||| ||||||| || || ||||||||||||||||||| Sbjct: 164 gggggaggagcgccgcatcggccgcgcccgctctgaggccatccacaagagggagaacac 223 Query: 353 cctgctcaaggagttcgagcagagcgccaagtcgtccgtcttccatgaccggcgcatcgg 412 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct: 224 tctgctcaaggagttcgagcagagcgccaagtcgtccgtgttccaggaccggcggatcgg 283 Query: 413 cgagaggg 420 ||||||| Sbjct: 284 ggagaggg 291
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Minus Query: 340 agagggagaacaccctgctcaaggagttcgagcagagcgccaagtcgtccgtcttccatg 399 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 22100056 agagggagaacactctgctcaaggagttcgagcagagcgccaagtcgtccgtgttccagg 22099997 Query: 400 accggcgcatcggcgagaggg 420 ||||||| ||||| ||||||| Sbjct: 22099996 accggcggatcggggagaggg 22099976 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 22100266 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 22100207 Query: 293 gggcgaggag 302 ||| |||||| Sbjct: 22100206 gggggaggag 22100197 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 169 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 225 |||||| |||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct: 22100351 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 22100295 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 30354909 cgcgcggggccgcggcggcgg 30354889 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 22749757 cgcgcggggccgcggcggcgg 22749737 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 22749657 cgcgcggggccgcggcggcgg 22749637 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 cgcggcggcggagcggagca 234 |||||||||||||||||||| Sbjct: 11182531 cgcggcggcggagcggagca 11182550
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Minus Query: 340 agagggagaacaccctgctcaaggagttcgagcagagcgccaagtcgtccgtcttccatg 399 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 22093085 agagggagaacactctgctcaaggagttcgagcagagcgccaagtcgtccgtgttccagg 22093026 Query: 400 accggcgcatcggcgagaggg 420 ||||||| ||||| ||||||| Sbjct: 22093025 accggcggatcggggagaggg 22093005 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 22093295 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 22093236 Query: 293 gggcgaggag 302 ||| |||||| Sbjct: 22093235 gggggaggag 22093226 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 169 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 225 |||||| |||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct: 22093380 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 22093324 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 30446331 cgcgcggggccgcggcggcgg 30446311 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 22742786 cgcgcggggccgcggcggcgg 22742766 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 22742686 cgcgcggggccgcggcggcgg 22742666 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 cgcggcggcggagcggagca 234 |||||||||||||||||||| Sbjct: 11179294 cgcggcggcggagcggagca 11179313
>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence Length = 167397 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 340 agagggagaacaccctgctcaaggagttcgagcagagcgccaagtcgtccgtcttccatg 399 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 48226 agagggagaacactctgctcaaggagttcgagcagagcgccaagtcgtccgtgttccagg 48285 Query: 400 accggcgcatcggcgagaggg 420 ||||||| ||||| ||||||| Sbjct: 48286 accggcggatcggggagaggg 48306 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Plus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 48016 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 48075 Query: 293 gggcgaggag 302 ||| |||||| Sbjct: 48076 gggggaggag 48085 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 169 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 225 |||||| |||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct: 47931 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 47987
>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence Length = 132987 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 340 agagggagaacaccctgctcaaggagttcgagcagagcgccaagtcgtccgtcttccatg 399 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 124824 agagggagaacactctgctcaaggagttcgagcagagcgccaagtcgtccgtgttccagg 124883 Query: 400 accggcgcatcggcgagaggg 420 ||||||| ||||| ||||||| Sbjct: 124884 accggcggatcggggagaggg 124904 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Plus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 124614 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 124673 Query: 293 gggcgaggag 302 ||| |||||| Sbjct: 124674 gggggaggag 124683 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 169 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 225 |||||| |||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct: 124529 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 124585
>gb|AY023193.1| Oryza sativa microsatellite MRG5518 containing (GCG)X9, closest to marker G1316, genomic sequence Length = 227 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Plus Query: 233 caaccccttcgaggccatctggtcgcgccgcaagttcgacgtgctcggcaagaagcgcaa 292 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 139 caaccccttcgaggccatctggtcccgccgcaagttcgacgtgctgggcaagaagcgcaa 198 Query: 293 gggcgaggag 302 ||| |||||| Sbjct: 199 gggggaggag 208 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 169 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 225 |||||| |||||||||||| || || || |||||||| ||||| ||||||||||||| Sbjct: 54 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 110
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 204 gcgcgcggggccgcggcggcggag 227 |||||||||||||||||||||||| Sbjct: 18739775 gcgcgcggggccgcggcggcggag 18739752 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggccgcggcggcggagcgga 231 |||||||||||||||||||| Sbjct: 5654928 ggccgcggcggcggagcgga 5654909
>dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0071O21 Length = 158410 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 204 gcgcgcggggccgcggcggcggag 227 |||||||||||||||||||||||| Sbjct: 82417 gcgcgcggggccgcggcggcggag 82394
>ref|XM_483666.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1158 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 60 ggccgcggcggcggagcggagc 39
>ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B11.9 mRNA Length = 1229 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 71 ggccgcggcggcggagcggagc 50
>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene region Length = 65993 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 57041 ggccgcggcggcggagcggagc 57062
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 27552001 ggccgcggcggcggagcggagc 27552022
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 34291 ggccgcggcggcggagcggagc 34312
>dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B09, full insert sequence Length = 1158 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 60 ggccgcggcggcggagcggagc 39
>dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074O14, full insert sequence Length = 1229 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 212 ggccgcggcggcggagcggagc 233 |||||||||||||||||||||| Sbjct: 71 ggccgcggcggcggagcggagc 50
>ref|XM_463142.1| Oryza sativa (japonica cultivar-group), mRNA Length = 207 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 8 cgcgcggggccgcggcggcgg 28
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence Length = 140012 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 19688 cgcgcggggccgcggcggcgg 19668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 19588 cgcgcggggccgcggcggcgg 19568
>gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genomic sequence, complete sequence Length = 124170 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 87421 cgcgcggggccgcggcggcgg 87401 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 87321 cgcgcggggccgcggcggcgg 87301
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 cggggccgcggcggcggagcg 229 ||||||||||||||||||||| Sbjct: 4057376 cggggccgcggcggcggagcg 4057356
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ggcgcgcggggccgcggcggc 223 ||||||||||||||||||||| Sbjct: 144929 ggcgcgcggggccgcggcggc 144909
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ggcgcgcggggccgcggcggc 223 ||||||||||||||||||||| Sbjct: 257347 ggcgcgcggggccgcggcggc 257327
>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence Length = 149380 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 122106 cgcgcggggccgcggcggcgg 122126
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 tgctcaaggagttcgagcaga 375 ||||||||||||||||||||| Sbjct: 3709251 tgctcaaggagttcgagcaga 3709231
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 9503119 cgcgcggggccgcggcggcgg 9503139 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 9502998 cgcgcggggccgcggcggcgg 9503018
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 9503004 cgcgcggggccgcggcggcgg 9503024 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 9502883 cgcgcggggccgcggcggcgg 9502903
>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123766 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 88343 cgcgcggggccgcggcggcgg 88363 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cgcgcggggccgcggcggcgg 225 ||||||||||||||||||||| Sbjct: 88222 cgcgcggggccgcggcggcgg 88242
>ref|XM_464518.1| Oryza sativa (japonica cultivar-group), mRNA Length = 814 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ggccgcggcggcggagcgga 231 |||||||||||||||||||| Sbjct: 321 ggccgcggcggcggagcgga 340
>ref|XM_450404.1| Oryza sativa (japonica cultivar-group), mRNA Length = 429 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 ggagaggcgcacctcccgctcccg 322 |||||||||||||||| ||||||| Sbjct: 155 ggagaggcgcacctccagctcccg 132
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence Length = 1618915 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agaaaacgaacaagaagaaa 152 |||||||||||||||||||| Sbjct: 263460 agaaaacgaacaagaagaaa 263479
>gb|AC084046.13| Trypanosoma brucei chromosome 6 clone RPCI93-3D8, complete sequence Length = 154240 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agaaaacgaacaagaagaaa 152 |||||||||||||||||||| Sbjct: 56607 agaaaacgaacaagaagaaa 56626
>ref|NM_029850.2| Mus musculus B-cell CLL/lymphoma 7A (Bcl7a), mRNA Length = 3820 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 290 gaacaagaagaaaggcaagg 309
>gb|AC144714.4| Mus musculus BAC clone RP24-371M20 from chromosome 8, complete sequence Length = 176994 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 146557 gaacaagaagaaaggcaagg 146538
>gb|BC038481.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA clone MGC:47407 IMAGE:4501205), complete cds Length = 3820 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 290 gaacaagaagaaaggcaagg 309
>gb|BC046777.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA clone MGC:61344 IMAGE:5709511), complete cds Length = 2506 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 195 gaacaagaagaaaggcaagg 214
>gb|AC113504.10| Mus musculus chromosome 5, clone RP23-370G17, complete sequence Length = 219617 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 110587 gaacaagaagaaaggcaagg 110606
>ref|XM_987782.1| PREDICTED: Mus musculus hypothetical protein LOC667020 (LOC667020), mRNA Length = 390 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 296 gcgcggggccgcggcggcgg 315
>ref|XM_992598.1| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2 (Lrp2), mRNA Length = 15482 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_899854.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 4 (Lrp2), mRNA Length = 3986 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_899846.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 3 (Lrp2), mRNA Length = 4408 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_899859.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 5 (Lrp2), mRNA Length = 15446 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_130308.5| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 1 (Lrp2), mRNA Length = 15467 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_921143.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 7 (Lrp2), mRNA Length = 2266 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_921164.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 8 (Lrp2), mRNA Length = 3986 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_130363.6| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 2 (Lrp2), mRNA Length = 4408 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_921174.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 9 (Lrp2), mRNA Length = 15446 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_909085.2| PREDICTED: Mus musculus low density lipoprotein receptor-related protein 2, transcript variant 6 (Lrp2), mRNA Length = 15467 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 180 gcgcggggccgcggcggcgg 199
>ref|XM_754327.1| Ustilago maydis 521 hypothetical protein (UM03273.1) partial mRNA Length = 2304 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cacctcccgctcccgctccg 327 |||||||||||||||||||| Sbjct: 759 cacctcccgctcccgctccg 778
>ref|XM_386764.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06588.1) partial mRNA Length = 1659 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aagcgcaagggcgaggagag 304 |||||||||||||||||||| Sbjct: 1348 aagcgcaagggcgaggagag 1367
>gb|BC017640.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA clone MGC:28969 IMAGE:4482250), complete cds Length = 2135 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 279 gaacaagaagaaaggcaagg 298
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gcgcgcggggccgcggcggc 223 |||||||||||||||||||| Sbjct: 2374216 gcgcgcggggccgcggcggc 2374197
>gb|AF532105.1|AF532104S2 Aegilops tauschii strain TA1649 cosmid 69-7-1 putative GAG-POL precursor, gene, complete cds; and unknown genes Length = 11825 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gggccgcggcggcggagcgg 230 |||||||||||||||||||| Sbjct: 10414 gggccgcggcggcggagcgg 10395
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 cgcggcggcggagcggagca 234 |||||||||||||||||||| Sbjct: 95888 cgcggcggcggagcggagca 95907
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgacgtgctcggcaagaagc 288 |||||||||||||||||||| Sbjct: 1691815 cgacgtgctcggcaagaagc 1691834
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cgcggcggcggagcggagca 234 |||||||||||||||||||| Sbjct: 98198 cgcggcggcggagcggagca 98179
>dbj|AK157720.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130008D23 product:B-cell CLL/lymphoma 7A, full insert sequence Length = 4641 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 314 gaacaagaagaaaggcaagg 333
>dbj|AK165434.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F520015P22 product:low density lipoprotein receptor-related protein 2, full insert sequence Length = 3950 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 142 gcgcggggccgcggcggcgg 161
>gb|U55373.2| Caenorhabditis elegans cosmid F26F12, complete sequence Length = 42467 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 acgtgctcggcaagaagcgcaagg 294 |||||||||| ||||||||||||| Sbjct: 17305 acgtgctcggaaagaagcgcaagg 17282
>dbj|AK084165.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230004K18 product:LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2 PRECURSOR (MEGALIN) (GLYCOPROTEIN 330) homolog [Rattus norvegicus], full insert sequence Length = 4372 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 143 gcgcggggccgcggcggcgg 162
>dbj|AK049346.2| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330026G04 product:low density lipoprotein receptor-related protein 2, full insert sequence Length = 2229 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 143 gcgcggggccgcggcggcgg 162
>dbj|AK086803.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030001O10 product:B-cell CLL/lymphoma 7A, full insert sequence Length = 3782 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 362 gaacaagaagaaaggcaagg 381
>ref|NM_072127.2| Caenorhabditis elegans F26F12.3b (F26F12.3) mRNA, complete cds Length = 2717 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 acgtgctcggcaagaagcgcaagg 294 |||||||||| ||||||||||||| Sbjct: 223 acgtgctcggaaagaagcgcaagg 246
>ref|NM_072126.2| Caenorhabditis elegans F26F12.3a (F26F12.3) mRNA, complete cds Length = 2719 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 acgtgctcggcaagaagcgcaagg 294 |||||||||| ||||||||||||| Sbjct: 225 acgtgctcggaaagaagcgcaagg 248
>ref|NM_001028685.1| Caenorhabditis elegans F26F12.3c (F26F12.3) mRNA, complete cds Length = 3653 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 acgtgctcggcaagaagcgcaagg 294 |||||||||| ||||||||||||| Sbjct: 296 acgtgctcggaaagaagcgcaagg 319
>dbj|AK044782.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930104J06 product:B-cell CLL/lymphoma 7A, full insert sequence Length = 3754 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 336 gaacaagaagaaaggcaagg 355
>dbj|AK014498.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:4432415N06 product:B-cell CLL/lymphoma 7A, full insert sequence Length = 2515 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gaacaagaagaaaggcaagg 159 |||||||||||||||||||| Sbjct: 308 gaacaagaagaaaggcaagg 327
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 ggagaggcgcacctcccgctcccg 322 |||||||||||||||| ||||||| Sbjct: 5256655 ggagaggcgcacctccagctcccg 5256678
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 24642183 gcgcggggccgcggcggcgg 24642202
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 acggcccggcggccgtggcc 197 |||||||||||||||||||| Sbjct: 2700282 acggcccggcggccgtggcc 2700263
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 68146 gcgcggggccgcggcggcgg 68165
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 ggagaggcgcacctcccgctcccg 322 ||||||||| |||||||||||||| Sbjct: 1300076 ggagaggcggacctcccgctcccg 1300053
>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence Length = 184026 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 tcgcgccgcaagttcgacgt 274 |||||||||||||||||||| Sbjct: 76375 tcgcgccgcaagttcgacgt 76356
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 10760 gcgcggggccgcggcggcgg 10779
>dbj|AP005739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0012A04 Length = 150317 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 ggagaggcgcacctcccgctcccg 322 |||||||||||||||| ||||||| Sbjct: 53368 ggagaggcgcacctccagctcccg 53391
>dbj|AP006155.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G04 Length = 144644 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 ggagaggcgcacctcccgctcccg 322 |||||||||||||||| ||||||| Sbjct: 91595 ggagaggcgcacctccagctcccg 91618
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggccgcggcggcggagcgga 231 |||||||||||||||||||| Sbjct: 82664 ggccgcggcggcggagcgga 82645
>dbj|AK068381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147P03, full insert sequence Length = 813 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ggccgcggcggcggagcgga 231 |||||||||||||||||||| Sbjct: 320 ggccgcggcggcggagcgga 339
>emb|Z74475.1|CER04F11 Caenorhabditis elegans Cosmid R04F11, complete sequence Length = 32975 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gacaagaaaacgaacaagaagaaa 152 |||||||||||||| ||||||||| Sbjct: 6598 gacaagaaaacgaagaagaagaaa 6575
>emb|AL845489.10| Mouse DNA sequence from clone RP23-300E5 on chromosome 2, complete sequence Length = 183980 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 167605 gcgcggggccgcggcggcgg 167586
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 ggagaggcgcacctcccgctcccg 322 ||||||||| |||||||||||||| Sbjct: 977272 ggagaggcggacctcccgctcccg 977249
>gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, complete sequence Length = 233117 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgcggggccgcggcggcgg 225 |||||||||||||||||||| Sbjct: 118107 gcgcggggccgcggcggcgg 118126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,572,870 Number of Sequences: 3902068 Number of extensions: 2572870 Number of successful extensions: 63918 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62680 Number of HSP's gapped (non-prelim): 1238 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
