ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUS15_HUMAN (Q9H1R2) Dual specificity protein phosphatase 15 (EC... 30 2.2
2LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I) 29 2.9
3PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ... 28 4.9
4Y220_SILPO (Q5LX20) UPF0247 protein SPO0220 28 6.4
5MUC1_YEAST (P08640) Mucin-like protein 1 precursor 28 8.4

>DUS15_HUMAN (Q9H1R2) Dual specificity protein phosphatase 15 (EC 3.1.3.48) (EC|
           3.1.3.16)
          Length = 295

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 19  LAACVWRLQA--IREARGRPARHCRGQCRLRQSPLVTPPP 132
           LAA V  L A  +REA GR A+ CR   R     L+ PPP
Sbjct: 166 LAARVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPP 205



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>LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)|
          Length = 323

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 73  ARHCRGQCRLRQSPLVTPPPSP 138
           +++C+ QC+L   P   PPPSP
Sbjct: 140 SKNCQSQCKLPSPPPPPPPPSP 161



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>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 10/37 (27%)
 Frame = -2

Query: 115 VATVEDDTGRGSGAPA----------GLELHVLPAAA 35
           +A+V D  GRG G PA          GL L+++PAAA
Sbjct: 17  IASVRDGRGRGCGGPAGAALLGLSLVGLLLYLVPAAA 53



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>Y220_SILPO (Q5LX20) UPF0247 protein SPO0220|
          Length = 156

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 118 RVATVEDDTGRGSGAPAGLELHVLPAAATHTQLERKTK 5
           RV  VED    G GA A L    LPA A    L+ + K
Sbjct: 40  RVVEVEDKKNAGMGAEAALLRKALPAGAVLCTLDERGK 77



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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 75  APLPRPVSSSTVATRHPSSFSFRXXXXXXXXXXXXXXXXSRAP 203
           AP+P P SSS + +  PSS  F                 S+ P
Sbjct: 864 APVPTPSSSSNITSSAPSSIPFSSTTESFSTGTTVTPSSSKYP 906


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,621,917
Number of Sequences: 219361
Number of extensions: 372662
Number of successful extensions: 1614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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