ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ215235.1| Taeniopygia guttata clone 0058P0026C11 Nur77 down... 48 0.026
2gb|DQ215234.1| Taeniopygia guttata clone 0058P0009D01 Nur77 down... 48 0.026
3gb|DQ215233.1| Taeniopygia guttata clone 0061P0007B04 Nur77 down... 48 0.026
4gb|DQ215231.1| Taeniopygia guttata clone 0061P0015D04 Nur77 down... 48 0.026
5gb|DQ215230.1| Taeniopygia guttata clone 0058P0039F05 Nur77 down... 48 0.026
6gb|DQ215229.1| Taeniopygia guttata clone 0058P0006C07 Nur77 down... 48 0.026
7gb|DQ215228.1| Taeniopygia guttata clone 0058P0006H08 Nur77 down... 48 0.026
8gb|DQ215226.1| Taeniopygia guttata clone 0058P0058A04 Nur77 down... 48 0.026
9gb|DQ215225.1| Taeniopygia guttata clone 0058P0006B07 Nur77 down... 48 0.026
10gb|DQ215224.1| Taeniopygia guttata clone 0061P0017F01 Nur77 down... 48 0.026
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
13emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.10
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.40
15gb|AC022100.7| Homo sapiens chromosome 5 clone CTB-66A9, complet... 44 0.40
16ref|XM_512217.1| PREDICTED: Pan troglodytes LOC455529 (LOC455529... 42 1.6
17ref|NM_001031029.1| Gallus gallus Jumonji, AT rich interactive d... 42 1.6
18ref|XM_589806.2| PREDICTED: Bos taurus similar to THAP domain pr... 42 1.6
19ref|XM_866052.1| PREDICTED: Bos taurus similar to THAP domain pr... 42 1.6
20gb|BC012182.1| Homo sapiens THAP domain containing 11, mRNA (cDN... 42 1.6
21ref|NM_020457.2| Homo sapiens THAP domain containing 11 (THAP11)... 42 1.6
22gb|AY176523.1| Anaplasma phagocytophilum p44 paralog gene, parti... 42 1.6
23gb|AC098022.5| Rattus norvegicus 7 BAC CH230-53D11 (Children's H... 42 1.6
24emb|AJ851588.1| Gallus gallus mRNA for hypothetical protein, clo... 42 1.6
25gb|AC005559.2|AC005559 Homo sapiens chromosome 19, cosmid F18382... 42 1.6
26gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, compl... 42 1.6
27dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
28gb|AC009005.10| Homo sapiens chromosome 19 clone LLNLR-299A11, c... 42 1.6
29gb|DQ215236.1| Taeniopygia guttata clone 0058P0022F04 Nur77 down... 40 6.3
30gb|DQ215232.1| Taeniopygia guttata clone 0058P0050C09 Nur77 down... 40 6.3
31gb|DQ215227.1| Taeniopygia guttata clone 0058P0007E10 Nur77 down... 40 6.3
32ref|NM_197616.1| Oryza sativa (japonica cultivar-group) putative... 40 6.3
33ref|XM_463369.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
34gb|AF000001.5|STAF000001 Salmonella typhi topoisomerase B (topB)... 40 6.3
35gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
36gb|AY249242.1| Salmonella enterica subsp. enterica serovar Parat... 40 6.3
37gb|AC133654.4| Mus musculus BAC clone RP24-332N10 from chromosom... 40 6.3
38gb|AF247502.1| Salmonella dublin Ytl2 (ytl2) gene, complete cds;... 40 6.3
39emb|CR679593.2|CNS0FNBP Tetraodon nigroviridis full-length cDNA 40 6.3
40emb|AL050312.8|HSBA9F11 Human DNA sequence from clone RP11-9F11 ... 40 6.3
41emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.3
42emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
43emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 6.3
44emb|AJ010260.1|PDE010260 Paracoccus denitrificans pseudoazurine ... 40 6.3
45emb|AJ720193.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.3
46ref|NM_001006331.1| Gallus gallus cell division cycle 27 (CDC27)... 40 6.3
47tpg|BK000838.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M239,... 40 6.3
48gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 gen... 40 6.3
49gb|S55222.1| neurotrophin-3 {5' region, promoter} [human, placen... 40 6.3
50gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.3
51gb|BC109762.1| Bos taurus cDNA clone MGC:134411 IMAGE:8060738, c... 40 6.3
52dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
53dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
54dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
55dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
56gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, com... 40 6.3
57gb|AC007848.11| Homo sapiens 12 BAC RPCI11-1038A11 (Roswell Park... 40 6.3
58gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra m... 40 6.3
59gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.3
60dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
61dbj|AK103222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
62gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 6.3
63gb|AC005895.1|AC005895 Homo sapiens chromosome 5, Bac clone 5m9 ... 40 6.3
64gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
65gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
66emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
67ref|NM_001037587.1| Bos taurus similar to BWK-1 (MGC134411), mRNA 40 6.3
68emb|AL772291.9| Mouse DNA sequence from clone RP23-395G1 on chro... 40 6.3
69gb|AC155337.1| Brassica rapa subsp. pekinensis clone KBrH117N09,... 40 6.3 
>gb|DQ215235.1| Taeniopygia guttata clone 0058P0026C11 Nur77 downstream protein 2
           variant 5-like mRNA, complete sequence
          Length = 653

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 50  cggggccggcccgcgccgcgccgc 27
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>gb|DQ215234.1| Taeniopygia guttata clone 0058P0009D01 Nur77 downstream protein 2
           variant 4-like mRNA, complete sequence
          Length = 655

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 42  cggggccggcccgcgccgcgccgc 19
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>gb|DQ215233.1| Taeniopygia guttata clone 0061P0007B04 Nur77 downstream protein 2
           variant 3-like mRNA, complete sequence
          Length = 676

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 70  cggggccggcccgcgccgcgccgc 47
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>gb|DQ215231.1| Taeniopygia guttata clone 0061P0015D04 Nur77 downstream protein 2
           variant 2-like mRNA, complete sequence
          Length = 652

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 52  cggggccggcccgcgccgcgccgc 29
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>gb|DQ215230.1| Taeniopygia guttata clone 0058P0039F05 Nur77 downstream protein 2
           variant 2-like mRNA, complete sequence
          Length = 676

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 63  cggggccggcccgcgccgcgccgc 40
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>gb|DQ215229.1| Taeniopygia guttata clone 0058P0006C07 Nur77 downstream protein 2
           variant 1-like mRNA, complete sequence
          Length = 652

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 45  cggggccggcccgcgccgcgccgc 22
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>gb|DQ215228.1| Taeniopygia guttata clone 0058P0006H08 Nur77 downstream protein 2
           variant 1-like mRNA, complete sequence
          Length = 683

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 78  cggggccggcccgcgccgcgccgc 55
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>gb|DQ215226.1| Taeniopygia guttata clone 0058P0058A04 Nur77 downstream protein 2
           variant 1-like mRNA, complete sequence
          Length = 675

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 70  cggggccggcccgcgccgcgccgc 47
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>gb|DQ215225.1| Taeniopygia guttata clone 0058P0006B07 Nur77 downstream protein 2
           variant 1-like mRNA, complete sequence
          Length = 684

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 78  cggggccggcccgcgccgcgccgc 55
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>gb|DQ215224.1| Taeniopygia guttata clone 0061P0017F01 Nur77 downstream protein 2
           variant 1-like mRNA, complete sequence
          Length = 684

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           ||||||||||||||||||||||||
Sbjct: 78  cggggccggcccgcgccgcgccgc 55
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 193      ggccggcccgcgccgcgccgccaccgc 219
                |||||||| ||||||||||||||||||
Sbjct: 18129990 ggccggccggcgccgcgccgccaccgc 18129964
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 193      ggccggcccgcgccgcgccgccaccgc 219
                |||||||| ||||||||||||||||||
Sbjct: 18056311 ggccggccggcgccgcgccgccaccgc 18056285
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>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155927

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 193   ggccggcccgcgccgcgccgccaccgc 219
             |||||||| ||||||||||||||||||
Sbjct: 83668 ggccggccggcgccgcgccgccaccgc 83642
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 198     gcccgcgccgcgccgccaccgc 219
               ||||||||||||||||||||||
Sbjct: 5116350 gcccgcgccgcgccgccaccgc 5116371



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 193     ggccggcccgcgccgcgccgc 213
               |||||||||||||||||||||
Sbjct: 1031235 ggccggcccgcgccgcgccgc 1031215



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 192     gggccggcccgcgccgcgcc 211
               ||||||||||||||||||||
Sbjct: 1624728 gggccggcccgcgccgcgcc 1624747
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>gb|AC022100.7| Homo sapiens chromosome 5 clone CTB-66A9, complete sequence
          Length = 149603

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 141   catcgcctcccactccccaccccgcc 166
             ||||| ||||||||||||||||||||
Sbjct: 90238 catcggctcccactccccaccccgcc 90263
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>ref|XM_512217.1| PREDICTED: Pan troglodytes LOC455529 (LOC455529), mRNA
          Length = 15756

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 11530 tccacctccgcacccctccgc 11510
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>ref|NM_001031029.1| Gallus gallus Jumonji, AT rich interactive domain 1B (RBP2-like)
           (JARID1B), mRNA
          Length = 5473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 195 ccggcccgcgccgcgccgccaccgc 219
           |||||||| ||||||||||||||||
Sbjct: 116 ccggcccgggccgcgccgccaccgc 92
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>ref|XM_589806.2| PREDICTED: Bos taurus similar to THAP domain protein 11, transcript
           variant 1 (LOC539845), mRNA
          Length = 1970

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gccggcccgcgccgcgccgcc 214
           |||||||||||||||||||||
Sbjct: 170 gccggcccgcgccgcgccgcc 150
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>ref|XM_866052.1| PREDICTED: Bos taurus similar to THAP domain protein 11, transcript
           variant 2 (LOC539845), mRNA
          Length = 1497

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gccggcccgcgccgcgccgcc 214
           |||||||||||||||||||||
Sbjct: 170 gccggcccgcgccgcgccgcc 150
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>gb|BC012182.1| Homo sapiens THAP domain containing 11, mRNA (cDNA clone MGC:20469
           IMAGE:4554554), complete cds
          Length = 1862

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gccggcccgcgccgcgccgcc 214
           |||||||||||||||||||||
Sbjct: 29  gccggcccgcgccgcgccgcc 9
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>ref|NM_020457.2| Homo sapiens THAP domain containing 11 (THAP11), mRNA
          Length = 1903

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gccggcccgcgccgcgccgcc 214
           |||||||||||||||||||||
Sbjct: 67  gccggcccgcgccgcgccgcc 47
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>gb|AY176523.1| Anaplasma phagocytophilum p44 paralog gene, partial cds
          Length = 564

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 gccgtccctccaccgggcgcc 269
           |||||||||||||||||||||
Sbjct: 275 gccgtccctccaccgggcgcc 255
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>gb|AC098022.5| Rattus norvegicus 7 BAC CH230-53D11 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 233080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   cctcccactccccaccccgcc 166
             |||||||||||||||||||||
Sbjct: 93892 cctcccactccccaccccgcc 93872
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>emb|AJ851588.1| Gallus gallus mRNA for hypothetical protein, clone 9d3
          Length = 5473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 195 ccggcccgcgccgcgccgccaccgc 219
           |||||||| ||||||||||||||||
Sbjct: 116 ccggcccgggccgcgccgccaccgc 92
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>gb|AC005559.2|AC005559 Homo sapiens chromosome 19, cosmid F18382 (LLNLF-140D2) and 3'
             overlapping restriction fragment, complete sequence
          Length = 38911

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 13284 tccacctccgcacccctccgc 13264



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 13236 tccacctccgcacccctccgc 13216



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 13188 tccacctccgcacccctccgc 13168
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>gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, complete sequence
          Length = 217470

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 194    gccggcccgcgccgcgccgcc 214
              |||||||||||||||||||||
Sbjct: 173501 gccggcccgcgccgcgccgcc 173521
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>dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C01, full
           insert sequence
          Length = 2727

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 72/89 (80%)
 Strand = Plus / Plus

                                                                       
Query: 296 atggcctggcggatgctgcgaagaaaggatgtccacgcaggcctcctgaatctggccttc 355
           ||||| ||||||||||||||| | |||||| | ||| | |||||  ||||| |||||| |
Sbjct: 221 atggcgtggcggatgctgcgacggaaggattttcacacgggccttgtgaatttggcctcc 280

                                        
Query: 356 cgctcggatcatggtggaacgaagcattt 384
           ||   ||||||||| ||| ||||| ||||
Sbjct: 281 cgtgtggatcatgggggagcgaagaattt 309
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>gb|AC009005.10| Homo sapiens chromosome 19 clone LLNLR-299A11, complete sequence
          Length = 31059

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 26729 tccacctccgcacccctccgc 26709



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 26681 tccacctccgcacccctccgc 26661



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tccacctccgcacccctccgc 27
             |||||||||||||||||||||
Sbjct: 26633 tccacctccgcacccctccgc 26613
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>gb|DQ215236.1| Taeniopygia guttata clone 0058P0022F04 Nur77 downstream protein 2
           variant 6-like mRNA, complete sequence
          Length = 664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           |||||||||||||||||| |||||
Sbjct: 51  cggggccggcccgcgccgtgccgc 28
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>gb|DQ215232.1| Taeniopygia guttata clone 0058P0050C09 Nur77 downstream protein 2
           variant 3-like mRNA, complete sequence
          Length = 696

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           |||||||||||||||||| |||||
Sbjct: 90  cggggccggcccgcgccgtgccgc 67
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>gb|DQ215227.1| Taeniopygia guttata clone 0058P0007E10 Nur77 downstream protein 2
           variant 1-like mRNA, complete sequence
          Length = 733

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 190 cggggccggcccgcgccgcgccgc 213
           |||||||||||||||||| |||||
Sbjct: 107 cggggccggcccgcgccgtgccgc 84
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>ref|NM_197616.1| Oryza sativa (japonica cultivar-group) putative cytochrome c-type
           biogenesis protein (OSJNBa0001O14.23), mRNA
          Length = 804

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 gccggcccgcgccgcgccgc 213
           ||||||||||||||||||||
Sbjct: 182 gccggcccgcgccgcgccgc 163
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>ref|XM_463369.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 513

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ccgcgccgcgccgccaccgc 219
           ||||||||||||||||||||
Sbjct: 298 ccgcgccgcgccgccaccgc 279
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>gb|AF000001.5|STAF000001 Salmonella typhi topoisomerase B (topB), single strand binding
            protein (ssb), Ytl2 homolog (ytl2) genes, complete cds;
            pil operon, complete sequence; Rci (rci) gene, complete
            cds
          Length = 20103

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 292  gatgatggcctggcggatgctgcg 315
            ||||||||||||||||||| ||||
Sbjct: 6205 gatgatggcctggcggatgatgcg 6228
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>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0313E01, complete sequence
          Length = 149215

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ccgcgccgcgccgccaccgc 219
             ||||||||||||||||||||
Sbjct: 68375 ccgcgccgcgccgccaccgc 68356
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>gb|AY249242.1| Salmonella enterica subsp. enterica serovar Paratyphi C strain
            CN13/87 topoisomerase B (topB), single-strand DNA-binding
            protein (ssb), and Ytl2 (ytl2) genes, complete cds; pil
            operon, complete sequence; and Rci site-specific
            recombinase (rci) gene, complete cds
          Length = 18030

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 292  gatgatggcctggcggatgctgcg 315
            ||||||||||||||||||| ||||
Sbjct: 4447 gatgatggcctggcggatgatgcg 4470
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>gb|AC133654.4| Mus musculus BAC clone RP24-332N10 from chromosome 15, complete sequence
          Length = 194622

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    tgggaaagctatcacagttc 418
              ||||||||||||||||||||
Sbjct: 110888 tgggaaagctatcacagttc 110907
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>gb|AF247502.1| Salmonella dublin Ytl2 (ytl2) gene, complete cds; pil operon,
           complete sequence; Rci (rci) gene, complete cds
          Length = 13842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 292 gatgatggcctggcggatgctgcg 315
           ||||||||||||||||||| ||||
Sbjct: 276 gatgatggcctggcggatgatgcg 299
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>emb|CR679593.2|CNS0FNBP Tetraodon nigroviridis full-length cDNA
          Length = 546

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 gaatctggccttccgctcgg 362
           ||||||||||||||||||||
Sbjct: 93  gaatctggccttccgctcgg 74
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>emb|AL050312.8|HSBA9F11 Human DNA sequence from clone RP11-9F11 on chromosome 22, complete
             sequence
          Length = 45896

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   gcccgcgccgcgccgccacc 217
             ||||||||||||||||||||
Sbjct: 27719 gcccgcgccgcgccgccacc 27700
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>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16
          Length = 349841

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gggccggcccgcgccgcgcc 211
              ||||||||||||||||||||
Sbjct: 188430 gggccggcccgcgccgcgcc 188411
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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
              complete sequence
          Length = 139418

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    ctccccaccccgccggcggc 172
              ||||||||||||||||||||
Sbjct: 113464 ctccccaccccgccggcggc 113445
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>emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 18/20
          Length = 234050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 292    gatgatggcctggcggatgctgcg 315
              ||||||||||||||||||| ||||
Sbjct: 185028 gatgatggcctggcggatgatgcg 185051
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>emb|AJ010260.1|PDE010260 Paracoccus denitrificans pseudoazurine gene (partial) and nos
           operon (nosCRZDFYLX genes)
          Length = 9631

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 191 ggggccggcccgcgccgcgc 210
           ||||||||||||||||||||
Sbjct: 731 ggggccggcccgcgccgcgc 712
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>emb|AJ720193.1| Gallus gallus mRNA for hypothetical protein, clone 12e16
          Length = 4010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 ggggccggcccgcgccgcgccgcc 214
           |||||||| |||||||||||||||
Sbjct: 61  ggggccgggccgcgccgcgccgcc 84
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>ref|NM_001006331.1| Gallus gallus cell division cycle 27 (CDC27), mRNA
          Length = 4010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 ggggccggcccgcgccgcgccgcc 214
           |||||||| |||||||||||||||
Sbjct: 61  ggggccgggccgcgccgcgccgcc 84
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>tpg|BK000838.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M239, complete sequence
          Length = 1387

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 ccgcgccgcgccgccaccgc 219
           ||||||||||||||||||||
Sbjct: 651 ccgcgccgcgccgccaccgc 670
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>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
             sequence
          Length = 178022

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   gccggcccgcgccgcgccgc 213
             ||||||||||||||||||||
Sbjct: 75006 gccggcccgcgccgcgccgc 74987
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>gb|S55222.1| neurotrophin-3 {5' region, promoter} [human, placenta, Genomic, 3821
            nt]
          Length = 3821

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  gccggcccgcgccgcgccgc 213
            ||||||||||||||||||||
Sbjct: 3174 gccggcccgcgccgcgccgc 3155
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 282     cccagggcacgatgatggcc 301
               ||||||||||||||||||||
Sbjct: 3150118 cccagggcacgatgatggcc 3150137
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>gb|BC109762.1| Bos taurus cDNA clone MGC:134411 IMAGE:8060738, complete cds
          Length = 1530

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggcctcctgaatctggcctt 354
           ||||||||||||||||||||
Sbjct: 322 ggcctcctgaatctggcctt 303
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 153      ctccccaccccgccggcggc 172
                ||||||||||||||||||||
Sbjct: 23223272 ctccccaccccgccggcggc 23223253
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      ccgcgccgcgccgccaccgc 219
                ||||||||||||||||||||
Sbjct: 25193105 ccgcgccgcgccgccaccgc 25193086
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 194      gccggcccgcgccgcgccgc 213
                ||||||||||||||||||||
Sbjct: 20812607 gccggcccgcgccgcgccgc 20812588
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 200      ccgcgccgcgccgccaccgc 219
                ||||||||||||||||||||
Sbjct: 23379226 ccgcgccgcgccgccaccgc 23379245
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>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence
          Length = 212548

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   ctcccactccccaccccgcc 166
             ||||||||||||||||||||
Sbjct: 87074 ctcccactccccaccccgcc 87055
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>gb|AC007848.11| Homo sapiens 12 BAC RPCI11-1038A11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104630

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   gccggcccgcgccgcgccgc 213
             ||||||||||||||||||||
Sbjct: 37236 gccggcccgcgccgcgccgc 37255
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>gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra megalomicin biosynthetic gene
             cluster, partial sequence
          Length = 47981

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   tccccaccccgccggcggcg 173
             ||||||||||||||||||||
Sbjct: 31756 tccccaccccgccggcggcg 31737
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     gggccggcccgcgccgcgcc 211
               ||||||||||||||||||||
Sbjct: 4326023 gggccggcccgcgccgcgcc 4326004



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     ggccggcccgcgccgcgccg 212
               ||||||||||||||||||||
Sbjct: 1274866 ggccggcccgcgccgcgccg 1274847



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    gccggcccgcgccgcgccgc 213
              ||||||||||||||||||||
Sbjct: 502680 gccggcccgcgccgcgccgc 502661
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1103C09
          Length = 163996

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    ccgcgccgcgccgccaccgc 219
              ||||||||||||||||||||
Sbjct: 104924 ccgcgccgcgccgccaccgc 104943
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>dbj|AK103222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123A02, full
           insert sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 gccggcccgcgccgcgccgc 213
           ||||||||||||||||||||
Sbjct: 292 gccggcccgcgccgcgccgc 273
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 292     gatgatggcctggcggatgctgcg 315
               ||||||||||||||||||| ||||
Sbjct: 4407678 gatgatggcctggcggatgatgcg 4407701
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>gb|AC005895.1|AC005895 Homo sapiens chromosome 5, Bac clone 5m9 (LBNL H220), complete sequence
          Length = 87857

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cgcctcccactccccacccc 163
             ||||||||||||||||||||
Sbjct: 59181 cgcctcccactccccacccc 59162
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 194      gccggcccgcgccgcgccgc 213
                ||||||||||||||||||||
Sbjct: 20823871 gccggcccgcgccgcgccgc 20823852
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      ccgcgccgcgccgccaccgc 219
                ||||||||||||||||||||
Sbjct: 25511763 ccgcgccgcgccgccaccgc 25511744
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ctccccaccccgccggcggc 172
             ||||||||||||||||||||
Sbjct: 61425 ctccccaccccgccggcggc 61406
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>ref|NM_001037587.1| Bos taurus similar to BWK-1 (MGC134411), mRNA
          Length = 1530

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggcctcctgaatctggcctt 354
           ||||||||||||||||||||
Sbjct: 322 ggcctcctgaatctggcctt 303
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>emb|AL772291.9| Mouse DNA sequence from clone RP23-395G1 on chromosome 4, complete
              sequence
          Length = 222046

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    ctcccactccccaccccgcc 166
              ||||||||||||||||||||
Sbjct: 102280 ctcccactccccaccccgcc 102299
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>gb|AC155337.1| Brassica rapa subsp. pekinensis clone KBrH117N09, complete sequence
          Length = 125390

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ccgcacccctccgccgccgg 33
             ||||||||||||||||||||
Sbjct: 83724 ccgcacccctccgccgccgg 83743


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,029,411
Number of Sequences: 3902068
Number of extensions: 3029411
Number of successful extensions: 71670
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70391
Number of HSP's gapped (non-prelim): 1279
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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