>VE2_HPV09 (P36780) Regulatory protein E2|
          Length = 461

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 175 GEGEGEGPETVRGRCRA---GEGQWQAGWDRRSM-RAGKAVGRVAEDRARAAGGWR 20
           GEGEGEG ET   R R+   G  + + G +RR   R+  A      DR R  GG R
Sbjct: 263 GEGEGEGEETNYRRQRSRSKGRTETERGGERRRRGRSSSADSTTPTDRRRGRGGGR 318

>FGD5_MOUSE (Q80UZ0) FYVE, RhoGEF and PH domain-containing protein 5|
          Length = 1219

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 199  PAAKADLAGEGEGEGPETVRGRCRAGEGQWQAGW 98
            P+A +++A  GEG        RC++G+ +W+  W
Sbjct: 1108 PSALSEVAASGEGSAISGYLSRCKSGKRRWKKLW 1141

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 25.4 bits (54), Expect(2) = 1.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 PPRPSARPSCAYQALDLPPSNP 322
           P RP +RP    Q++  PPS P
Sbjct: 745 PTRPPSRPPSRPQSVSRPPSEP 766



 Score = 23.9 bits (50), Expect(2) = 1.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 88  TSCPSPLATDPPPRGSDHAPSPAPLLRPHRP 180
           +S PS L    P   S H PSP P   P RP
Sbjct: 723 SSSPS-LPHQAPLGDSPHLPSPHPTRPPSRP 752

>HXA4_MOUSE (P06798) Homeobox protein Hox-A4 (Hox-1.4) (MH-3)|
          Length = 285

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   RRHNTASPPAGGPSPVLCHSPH 67
           R  NTAS PAG P     HSPH
Sbjct: 247 RSSNTASAPAGPPGKAQTHSPH 268

>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 97   PSPLATDPPPRGSDHAPSPAPLLRPHRPG 183
            P P+ T+   R +D  P P PL   HRPG
Sbjct: 1729 PGPIGTERSQR-TDRGPEPGPLRPAHRPG 1756

>Y968_MYCBO (P64766) Hypothetical protein Mb0968c|
          Length = 346

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
 Frame = -3

Query: 93  GGRCAPAR-----PWGEWQRTGLGPP 31
           GGR APAR     PWG     G+GPP
Sbjct: 309 GGRSAPARITEQTPWGTHSVAGVGPP 334

>Y943_MYCTU (P64765) Hypothetical protein Rv0943c/MT0969|
          Length = 346

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
 Frame = -3

Query: 93  GGRCAPAR-----PWGEWQRTGLGPP 31
           GGR APAR     PWG     G+GPP
Sbjct: 309 GGRSAPARITEQTPWGTHSVAGVGPP 334

>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  PSPLATDPPPRGSDHAPSPAP 159
           PSPL + PPP  S   PSP+P
Sbjct: 64  PSPLPSPPPPSPSPPPPSPSP 84



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 97  PSPLATDPPPRGSDHAPSPAPLLRP 171
           PSP    PPP     APSP+P  +P
Sbjct: 191 PSPAKQPPPPPPPVKAPSPSPATQP 215

>GPA1_TRIVA (Q86D96) Guanine nucleotide-binding protein alpha-1 subunit (G|
           alpha-1) (GTP-binding protein alpha subunit 1)
          Length = 402

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  PSPLATDPPPRGSDHAPSPAPLLRPHRP 180
           P P     PP+ ++ AP+PAP   P +P
Sbjct: 39  PEPQPQPEPPKPAEPAPAPAPAPEPQKP 66

>FGD5_HUMAN (Q6ZNL6) FYVE, RhoGEF and PH domain-containing protein 5 (Zinc finger|
            FYVE domain-containing protein 23)
          Length = 1462

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 199  PAAKADLAGEGEGEGPETVRGRCRAGEGQWQAGW 98
            P+A  ++A  GEG        RC+ G+  W+  W
Sbjct: 1351 PSALTEVAASGEGSAISGYLSRCKRGKRHWKKLW 1384

>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 690

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -2

Query: 205 RRPAAKADLAGEGEGEGPETVRGRCRAGEGQWQAGWDRRSMRAGKAVGRVAEDR 44
           R   ++A   GE   +     RGR RAG+   Q G DRRS  A    G  A+ R
Sbjct: 138 RSGGSEARDEGEDRPQSERRSRGRRRAGDDDAQQGQDRRSDGAQGEDGADADRR 191

>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)|
          Length = 485

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 100 SPLATDPPPRGSDHAPSPAPLLRPHRP 180
           SPL   P P  S   PSP P  RP  P
Sbjct: 227 SPLPPSPQPTASSRPPSPPPSPRPPSP 253

>VE2_HPV10 (P36781) Regulatory protein E2|
          Length = 376

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -2

Query: 169 GEGEGPETVRGRCRAGEGQW----QAGWDRRSMRAGKAVGRVAEDRAR 38
           G  EGPE  R R  A +GQ     Q   D     A +A G+V  DR R
Sbjct: 230 GASEGPEQKRQRLEAVDGQHQQQRQGSKDSTQKAAERAGGQVDSDRTR 277

>PKN3_MOUSE (Q8K045) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein|
           kinase PKN-beta) (Protein-kinase C-related kinase 3)
          Length = 878

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 11  NTASPPAGGPSPVLCHSP 64
           NTASPP G PS  +C +P
Sbjct: 462 NTASPPKGRPSTAVCGTP 479

>GPNMB_MOUSE (Q99P91) Transmembrane glycoprotein NMB precursor (Dendritic|
           cell-associated transmembrane protein) (DC-HIL)
          Length = 574

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 94  CPSPLATDPPPRGSDHAPSPAPL 162
           CP P  + PPP  +  +P P+PL
Sbjct: 323 CPPPSPSTPPPPSTPPSPPPSPL 345

>M3K11_HUMAN (Q16584) Mitogen-activated protein kinase kinase kinase 11 (EC|
           2.7.11.25) (Mixed lineage kinase 3) (Src-homology 3
           domain-containing proline-rich kinase)
          Length = 847

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
 Frame = +1

Query: 88  TSCPSPLATDPPP--------RGSDHAPSPAPLL 165
           T  P+P  T+PPP        +  D  P+PAPLL
Sbjct: 680 TPTPAPCPTEPPPSPLICFSLKTPDSPPTPAPLL 713

>GMIP_HUMAN (Q9P107) GEM-interacting protein (GMIP)|
          Length = 970

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 PLATDPPPRGSDHAPSPAPLLRPHRP 180
           P AT+PPP+  D +P+P PL    +P
Sbjct: 763 PQATEPPPQ--DFSPAPGPLTTSSQP 786

>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression|
            inhibition of growth A)
          Length = 1790

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 97   PSPLATDPPPRGSDHAPSPAPLLRPHRPG 183
            P P    PPP G+  AP P P   P  PG
Sbjct: 1035 PPPPPPPPPPPGAGAAPPPPPPPPPPPPG 1063

>CT012_MACFA (Q9GKS9) Protein C20orf12 homolog|
          Length = 606

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 260 PRPSARPSCAYQALDLPPSNPRRD 331
           PRP + P CA+Q+L++P   PR D
Sbjct: 257 PRPFSEPQCAWQSLNIP--LPRSD 278

>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 730

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 88  TSCPSPLATDPPPRGSDHAPSPAPLLRP 171
           T  PSP  T  P  G   APSP P   P
Sbjct: 488 TGAPSPGPTSSPSPGPTGAPSPGPTAAP 515

>IAAG_MAIZE (Q41819) Indole-3-acetate beta-glucosyltransferase (EC 2.4.1.121)|
           (IAA-Glu synthetase) ((Uridine
           5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl
           transferase)
          Length = 471

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -2

Query: 145 VRGRCRAGEGQWQAGWDRRSMRAGKAVGRVAEDRARAAGGWR 20
           VR R  AG G +  G   R +RA    G  A    +AAG WR
Sbjct: 399 VRARRDAGAGVFLRGEVERCVRAVMDGGEAASAARKAAGEWR 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.134    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,811,334
Number of Sequences: 219361
Number of extensions: 580791
Number of successful extensions: 3331
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3300
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)