Clone Information

BLAST Search Result

Clone Name	bastl31e08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK121389.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	8e-18
2	gb\|AC151537.1\| Oryza sativa (japonica cultivar-group) chromosome...	80	8e-12
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	80	8e-12
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	80	8e-12
5	gb\|AC137076.1\| Genomic sequence for Oryza sativa, Nipponbare str...	80	8e-12
6	emb\|AL662864.14\| Human DNA sequence from clone RP11-493K23 on ch...	46	0.11
7	gb\|AE006466.1\| Homo sapiens 16p13.3 sequence section 5 of 8	46	0.11
8	gb\|AC120498.2\| Homo sapiens chromosome 16 clone RP11-616M22, com...	46	0.11
9	emb\|AL135750.5\|HSO20 Homo sapiens chromosome X sequence from BAC...	46	0.11
10	emb\|AL031712.21\|HS344F5 Human DNA sequence from clone LA16c-344F...	46	0.11
11	ref\|XM_511436.1\| PREDICTED: Pan troglodytes similar to mKIAA1501...	42	1.6
12	ref\|NM_001003108.1\| Canis familiaris G protein-coupled receptor ...	42	1.6
13	ref\|XM_542572.2\| PREDICTED: Canis familiaris similar to Protein ...	42	1.6
14	gb\|AC102567.8\| Mus musculus chromosome 9, clone RP23-224F1, comp...	42	1.6
15	gb\|AC115090.8\| Homo sapiens chromosome 17, clone CTC-861O14, com...	42	1.6
16	gb\|AF386507.1\|AF386507 Streptomyces lavendulae complestatin bios...	42	1.6
17	gb\|AC129883.3\| Ornithorhynchus anatinus clone OA_Bb-305F19, comp...	42	1.6
18	gb\|AC129916.6\| Homo sapiens chromosome 17, clone RP11-2L19, comp...	42	1.6
19	dbj\|AK065502.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
20	gb\|DQ149153.1\| Cercopithecine herpesvirus 16 strain X313, comple...	42	1.6
21	emb\|AL117192.5\|CNS01DRE Human chromosome 14 DNA sequence BAC R-8...	42	1.6
22	dbj\|AP006631.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	42	1.6
23	emb\|Y19224.1\|CFY19224 Canis familiaris mRNA for glucocorticoid i...	42	1.6
24	gb\|AC006534.10\| Homo sapiens chromosome 17, clone RP11-557B23, c...	42	1.6
25	gb\|AC121261.9\| Mus musculus chromosome 7, clone RP24-69L13, comp...	40	6.5
26	ref\|NM_001003107.1\| Canis familiaris Niemann-Pick disease, type ...	40	6.5
27	gb\|AC120529.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
28	gb\|AC135601.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
29	gb\|AC149224.7\| Mus musculus BAC clone RP23-81D11 from chromosome...	40	6.5
30	gb\|AC011705.11\| Drosophila melanogaster clone BACR10C18, complet...	40	6.5
31	gb\|AC157930.7\| Mus musculus chromosome 5, clone RP24-151E22, com...	40	6.5
32	gb\|AC146893.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
33	emb\|AL391117.8\| Human DNA sequence from clone RP11-103B9 on chro...	40	6.5
34	emb\|AL354726.17\| Human DNA sequence from clone RP11-535C21 on ch...	40	6.5
35	emb\|AL354795.17\| Human DNA sequence from clone RP11-174B4 on chr...	40	6.5
36	gb\|AC104615.9\| Oryza sativa chromosome 10 BAC OSJNBa0056A15 geno...	40	6.5
37	emb\|AL939132.1\|SCO939132 Streptomyces coelicolor A3(2) complete ...	40	6.5
38	emb\|AL672175.7\| Mouse DNA sequence from clone RP23-205A9 on chro...	40	6.5
39	emb\|CR381585.11\| Zebrafish DNA sequence from clone DKEY-27P7 in ...	40	6.5
40	ref\|NM_078695.2\| Drosophila melanogaster Rab-protein 10 CG17060-...	40	6.5
41	gb\|AY060425.1\| Drosophila melanogaster LD39986 full length cDNA	40	6.5
42	gb\|AC161478.5\| Pan troglodytes BAC clone CH251-170F20 from chrom...	40	6.5
43	gb\|AC159215.2\| Pan troglodytes BAC clone CH251-458G5 from chromo...	40	6.5
44	gb\|AC102477.18\| Mus musculus chromosome 5, clone RP24-405C17, co...	40	6.5
45	gb\|AC009251.6\|AC009251 Drosophila melanogaster, chromosome 2L, r...	40	6.5
46	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
47	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
48	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
49	gb\|AF315034.1\|AF315034 Canis familiaris Niemann-Pick type C1 dis...	40	6.5
50	gb\|AC004134.1\|AC004134 Homo sapiens chromosome 17, clone hCIT.50...	40	6.5
51	dbj\|AP003608.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
52	dbj\|AP004810.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
53	gb\|AC158683.2\| Mus musculus 6 BAC RP23-328P16 (Roswell Park Canc...	40	6.5
54	dbj\|BS000076.1\| Pan troglodytes chromosome 22 clone:PTB-096O09, ...	40	6.5
55	dbj\|BS000075.1\| Pan troglodytes chromosome 22 clone:RP43-111A01,...	40	6.5
56	gb\|AC158406.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
57	dbj\|AK065374.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.5
58	gb\|AC108832.10\| Mus musculus chromosome 7, clone RP23-242J3, com...	40	6.5
59	gb\|AE003655.3\| Drosophila melanogaster chromosome 2L, section 64...	40	6.5
60	gb\|AE003572.4\| Drosophila melanogaster chromosome X, section 67 ...	40	6.5
61	gb\|AF039403.1\|AF039403 Gallus gallus paired box protein (Pax-1) ...	40	6.5
62	dbj\|AP001683.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.5
63	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	6.5
64	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
65	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
66	emb\|AL133241.3\|CNS01DUE Human chromosome 14 DNA sequence BAC C-2...	40	6.5
67	gb\|AC165089.5\| Mus musculus BAC clone RP23-85H2 from chromosome ...	40	6.5
68	dbj\|AB006189.1\| Drosophila melanogaster mRNA for Rab10, complete...	40	6.5
69	dbj\|AP000472.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	6.5

>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full
           insert sequence
          Length = 3343

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                       
Query: 343 gatcctgctttccaaggggctggccaaaaagttgggatagaaatatggcgcattgaagat 402
           |||||||| || ||||| | ||||||||||  ||| | |||||||||| | ||| |||||
Sbjct: 197 gatcctgcatttcaaggagttggccaaaaacctggcacagaaatatggaggattcaagat 256

                                                                       
Query: 403 tttaagccagttgcattgccaaaatctgattatggtaaattctattctggagattcatat 462
           |||||||||||| | ||||||||| | ||||| |||||||| ||   |||||||||||||
Sbjct: 257 tttaagccagttcctttgccaaaagcagattacggtaaattttacaatggagattcatat 316

                             
Query: 463 atagttttgcagacgact 480
           |||||| | |||||||||
Sbjct: 317 atagttctccagacgact 334

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>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0087D01, complete sequence
          Length = 83225

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 381   agaaatatggcgcattgaagattttaagccagttgcattgccaaaatctgattatggtaa 440
             |||||||||| | ||| ||||||||||||||||| | ||||||||| | ||||| |||||
Sbjct: 79598 agaaatatggaggattcaagattttaagccagttcctttgccaaaagcagattacggtaa 79657

                                         
Query: 441   attctattctggagattcatatatagtt 468
             ||| ||   |||||||||||||||||||
Sbjct: 79658 attttacaatggagattcatatatagtt 79685

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 381      agaaatatggcgcattgaagattttaagccagttgcattgccaaaatctgattatggtaa 440
                |||||||||| | ||| ||||||||||||||||| | ||||||||| | ||||| |||||
Sbjct: 13616843 agaaatatggaggattcaagattttaagccagttcctttgccaaaagcagattacggtaa 13616902

                                            
Query: 441      attctattctggagattcatatatagtt 468
                ||| ||   |||||||||||||||||||
Sbjct: 13616903 attttacaatggagattcatatatagtt 13616930



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                    
Query: 77       tcccctcctcactctcg-cctccccaccgccgacgg 111
                |||||||||| |||||| ||||||||||| ||||||
Sbjct: 16940543 tcccctcctccctctcggcctccccaccggcgacgg 16940508

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 381      agaaatatggcgcattgaagattttaagccagttgcattgccaaaatctgattatggtaa 440
                |||||||||| | ||| ||||||||||||||||| | ||||||||| | ||||| |||||
Sbjct: 13611818 agaaatatggaggattcaagattttaagccagttcctttgccaaaagcagattacggtaa 13611877

                                            
Query: 441      attctattctggagattcatatatagtt 468
                ||| ||   |||||||||||||||||||
Sbjct: 13611878 attttacaatggagattcatatatagtt 13611905



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                    
Query: 77       tcccctcctcactctcg-cctccccaccgccgacgg 111
                |||||||||| |||||| ||||||||||| ||||||
Sbjct: 16934116 tcccctcctccctctcggcctccccaccggcgacgg 16934081

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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                        
Query: 381  agaaatatggcgcattgaagattttaagccagttgcattgccaaaatctgattatggtaa 440
            |||||||||| | ||| ||||||||||||||||| | ||||||||| | ||||| |||||
Sbjct: 7515 agaaatatggaggattcaagattttaagccagttcctttgccaaaagcagattacggtaa 7574

                                        
Query: 441  attctattctggagattcatatatagtt 468
            ||| ||   |||||||||||||||||||
Sbjct: 7575 attttacaatggagattcatatatagtt 7602

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>emb|AL662864.14| Human DNA sequence from clone RP11-493K23 on chromosome X Contains two
             novel genes, two novel genes similar to poly(A) binding
             protein cytoplasmic 1 (LOC340530, LOC340529) and two CpG
             islands, complete sequence
          Length = 120769

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 121   ccccctcccgctccggctccctctccc 147
             |||||||||||||| ||||||||||||
Sbjct: 76271 ccccctcccgctcccgctccctctccc 76297

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>gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8
          Length = 265786

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 121   ccccctcccgctccggctccctctccc 147
             ||||||||||||||||||||| |||||
Sbjct: 88283 ccccctcccgctccggctccccctccc 88257

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>gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, complete sequence
          Length = 195680

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 121   ccccctcccgctccggctccctctccc 147
             ||||||||||||||||||||| |||||
Sbjct: 31655 ccccctcccgctccggctccccctccc 31629

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>emb|AL135750.5|HSO20 Homo sapiens chromosome X sequence from BAC CEPHB20O20 region
             PHKA1-DXS227 map Xq13, complete sequence
          Length = 115637

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 121   ccccctcccgctccggctccctctccc 147
             |||||||||||||| ||||||||||||
Sbjct: 79709 ccccctcccgctcccgctccctctccc 79735

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>emb|AL031712.21|HS344F5 Human DNA sequence from clone LA16c-344F5 on chromosome 16, complete
             sequence
          Length = 37305

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 121   ccccctcccgctccggctccctctccc 147
             ||||||||||||||||||||| |||||
Sbjct: 19962 ccccctcccgctccggctccccctccc 19936

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>ref|XM_511436.1| PREDICTED: Pan troglodytes similar to mKIAA1501 protein
           (LOC454610), mRNA
          Length = 6622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 226 ggcgccccttccccgggcaggggcc 250
           |||||||||||||| ||||||||||
Sbjct: 578 ggcgccccttcccctggcaggggcc 602

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>ref|NM_001003108.1| Canis familiaris G protein-coupled receptor 83 (GPR83), mRNA
          Length = 1808

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 125 ctcccgctccggctccctctcccgc 149
           ||||||||||||||||| |||||||
Sbjct: 101 ctcccgctccggctcccgctcccgc 77

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>ref|XM_542572.2| PREDICTED: Canis familiaris similar to Protein KIAA0853 (LOC485453),
            mRNA
          Length = 5026

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 125  ctcccgctccggctccctctcccgc 149
            |||||||||| ||||||||||||||
Sbjct: 2359 ctcccgctcccgctccctctcccgc 2335

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>gb|AC102567.8| Mus musculus chromosome 9, clone RP23-224F1, complete sequence
          Length = 198097

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 125    ctcccgctccggctccctctcccgc 149
              |||||||||| ||||||||||||||
Sbjct: 138472 ctcccgctcccgctccctctcccgc 138496

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>gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, complete sequence
          Length = 173716

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 226   ggcgccccttccccgggcaggggcc 250
             |||||||||||||| ||||||||||
Sbjct: 96876 ggcgccccttcccctggcaggggcc 96852

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>gb|AF386507.1|AF386507 Streptomyces lavendulae complestatin biosynthetic gene cluster,
             complete sequence
          Length = 55972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   cggatcaccgctcccgcgtcg 173
             |||||||||||||||||||||
Sbjct: 16371 cggatcaccgctcccgcgtcg 16351

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>gb|AC129883.3| Ornithorhynchus anatinus clone OA_Bb-305F19, complete sequence
          Length = 181157

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    cgctccggctccctctcccgc 149
              |||||||||||||||||||||
Sbjct: 151670 cgctccggctccctctcccgc 151650

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>gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, complete sequence
          Length = 167265

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 226    ggcgccccttccccgggcaggggcc 250
              |||||||||||||| ||||||||||
Sbjct: 142682 ggcgccccttcccctggcaggggcc 142658

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>dbj|AK065502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027C12, full
           insert sequence
          Length = 3937

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 355 caaggggctggccaaaaagttgggatagaaatatggcgcattgaa 399
           ||||||||||| ||||||| |||  | ||||||||||| ||||||
Sbjct: 554 caaggggctggtcaaaaagatggattggaaatatggcggattgaa 598

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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 121   ccccctcccgctccggctccctctcccgc 149
             |||||||||||||| |||||| |||||||
Sbjct: 25606 ccccctcccgctcccgctccccctcccgc 25578



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 121   ccccctcccgctccggctccctctcccgc 149
             |||||||||||||| |||||| |||||||
Sbjct: 25588 ccccctcccgctcccgctccccctcccgc 25560

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>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210869

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 125    ctcccgctccggctccctctcccgc 149
              |||||||||| ||||||||||||||
Sbjct: 177222 ctcccgctcccgctccctctcccgc 177246

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>dbj|AP006631.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT12F12, TM0028b,
             complete sequence
          Length = 34228

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   tcatcaccttcaaatcgagcc 302
             |||||||||||||||||||||
Sbjct: 33797 tcatcaccttcaaatcgagcc 33817

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>emb|Y19224.1|CFY19224 Canis familiaris mRNA for glucocorticoid induced receptor (GIR
           gene)
          Length = 1808

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 125 ctcccgctccggctccctctcccgc 149
           ||||||||||||||||| |||||||
Sbjct: 101 ctcccgctccggctcccgctcccgc 77

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>gb|AC006534.10| Homo sapiens chromosome 17, clone RP11-557B23, complete sequence
          Length = 216789

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 123    ccctcccgctccggctccctctccc 147
              |||||||||||| ||||||||||||
Sbjct: 194112 ccctcccgctcccgctccctctccc 194088

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>gb|AC121261.9| Mus musculus chromosome 7, clone RP24-69L13, complete sequence
          Length = 163319

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    cccccttcccctcctcactc 90
             ||||||||||||||||||||
Sbjct: 21001 cccccttcccctcctcactc 21020

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>ref|NM_001003107.1| Canis familiaris Niemann-Pick disease, type C1 (NPC1), mRNA
          Length = 4262

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 119 agccccctcccgctccggctccct 142
           ||||||| ||||||||||||||||
Sbjct: 773 agcccccacccgctccggctccct 796

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>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039N21, complete sequence
          Length = 151732

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 77    tcccctcctcactctcg-cctccccaccgccgacgg 111
             |||||||||| |||||| ||||||||||| ||||||
Sbjct: 83547 tcccctcctccctctcggcctccccaccggcgacgg 83512

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>gb|AC135601.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0051D22, complete sequence
          Length = 119919

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccccttcccctcctcactct 91
             ||||||||||||||||||||
Sbjct: 60448 ccccttcccctcctcactct 60429

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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 119   agccccctcccgctccggctccctctcc 146
             |||||||||| ||||| |||||||||||
Sbjct: 46252 agccccctccagctccagctccctctcc 46279

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>gb|AC011705.11| Drosophila melanogaster clone BACR10C18, complete sequence
          Length = 170975

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   gtaaagttgcttccaaatgt 325
             ||||||||||||||||||||
Sbjct: 57180 gtaaagttgcttccaaatgt 57161

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>gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, complete sequence
          Length = 146346

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   ctggtaaagttgcttccaaa 322
             ||||||||||||||||||||
Sbjct: 28317 ctggtaaagttgcttccaaa 28336

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>gb|AC146893.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1107B01,
             complete sequence
          Length = 160104

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   attcatatatagttttgcag 474
             ||||||||||||||||||||
Sbjct: 41664 attcatatatagttttgcag 41683

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>emb|AL391117.8| Human DNA sequence from clone RP11-103B9 on chromosome 9, complete
             sequence
          Length = 159940

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   ttgaagattttaagccagtt 414
             ||||||||||||||||||||
Sbjct: 45249 ttgaagattttaagccagtt 45268

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>emb|AL354726.17| Human DNA sequence from clone RP11-535C21 on chromosome 9 Contains 5'
             end of HEMGN gene for hemogen, the ANP32B gene for acidic
             (leucine-rich) nuclear phosphoprotein 32 family, member B
             and a CpG island, complete sequence
          Length = 82316

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 218   gccccaccggcgccccttccccgg 241
             |||||||| |||||||||||||||
Sbjct: 43568 gccccacccgcgccccttccccgg 43545

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>emb|AL354795.17| Human DNA sequence from clone RP11-174B4 on chromosome 9q21.2-22.1
              Contains the TRPM6 gene for transient receptor potential
              cation channel, subfamily  M, member 6 (CHAK2, FLJ20087,
              FLJ22628) and 2 CpG islands, complete sequence
          Length = 195290

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    tcccgctccggctccctctcccgc 149
              ||||||||| ||||||||||||||
Sbjct: 154782 tcccgctcccgctccctctcccgc 154805

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>gb|AC104615.9| Oryza sativa chromosome 10 BAC OSJNBa0056A15 genomic sequence, complete
             sequence
          Length = 150995

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   attcatatatagttttgcag 474
             ||||||||||||||||||||
Sbjct: 20643 attcatatatagttttgcag 20624

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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    tcgtcggcggccccaccggc 228
              ||||||||||||||||||||
Sbjct: 101119 tcgtcggcggccccaccggc 101100

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>emb|AL672175.7| Mouse DNA sequence from clone RP23-205A9 on chromosome 11 Contains the
              Nog gene for noggin, the 3' end of the gene for a novel
              protein (4932411E22Rik) and one CpG island, complete
              sequence
          Length = 212341

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    ggtggatcctgctttccaag 358
              ||||||||||||||||||||
Sbjct: 174161 ggtggatcctgctttccaag 174180

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>emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in linkage group 20
             Contains the gene for a novel protein similar to mouse and
             human integrin beta 1 binding protein 1 (ITGB1BP1), the
             gene for a novel protein similar to vertebrate development
             and differentiation enhancing factor 2 (DDEF2) and three
             CpG islands, complete sequence
          Length = 209698

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 445   tattctggaga-ttcatatatagttttg 471
             ||||||||||| ||||||||||||||||
Sbjct: 31696 tattctggagaattcatatatagttttg 31723

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>ref|NM_078695.2| Drosophila melanogaster Rab-protein 10 CG17060-RA (Rab10), mRNA
          Length = 2249

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gtaaagttgcttccaaatgt 325
            ||||||||||||||||||||
Sbjct: 1212 gtaaagttgcttccaaatgt 1193

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>gb|AY060425.1| Drosophila melanogaster LD39986 full length cDNA
          Length = 2349

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gtaaagttgcttccaaatgt 325
            ||||||||||||||||||||
Sbjct: 1212 gtaaagttgcttccaaatgt 1193

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>gb|AC161478.5| Pan troglodytes BAC clone CH251-170F20 from chromosome unknown,
             complete sequence
          Length = 150487

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   attatggtaaattctattct 450
             ||||||||||||||||||||
Sbjct: 90020 attatggtaaattctattct 90039

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>gb|AC159215.2| Pan troglodytes BAC clone CH251-458G5 from chromosome unknown, complete
              sequence
          Length = 208565

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    attatggtaaattctattct 450
              ||||||||||||||||||||
Sbjct: 135438 attatggtaaattctattct 135419

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>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence
          Length = 179495

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   ctggtaaagttgcttccaaa 322
             ||||||||||||||||||||
Sbjct: 91708 ctggtaaagttgcttccaaa 91689

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>gb|AC009251.6|AC009251 Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
             BACR48K02, complete sequence
          Length = 178530

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   ttgccaaaatctgattatggtaaa 441
             |||||||||| |||||||||||||
Sbjct: 81929 ttgccaaaatttgattatggtaaa 81906

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       ccccttcccctcctcactct 91
                ||||||||||||||||||||
Sbjct: 10540478 ccccttcccctcctcactct 10540497

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 455     attcatatatagttttgcag 474
               ||||||||||||||||||||
Sbjct: 6678433 attcatatatagttttgcag 6678452

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 123      ccctcccgctccggctccctctcccgcc 150
                |||||||||||| |||||| ||||||||
Sbjct: 20143305 ccctcccgctcccgctcccgctcccgcc 20143278

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>gb|AF315034.1|AF315034 Canis familiaris Niemann-Pick type C1 disease protein (NPC1) mRNA,
           complete cds
          Length = 4262

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 119 agccccctcccgctccggctccct 142
           ||||||| ||||||||||||||||
Sbjct: 773 agcccccacccgctccggctccct 796

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>gb|AC004134.1|AC004134 Homo sapiens chromosome 17, clone hCIT.507_E_2, complete sequence
          Length = 119307

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   attatggtaaattctattct 450
             ||||||||||||||||||||
Sbjct: 88090 attatggtaaattctattct 88109

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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0007G12
          Length = 111819

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 123  ccctcccgctccggctccctctcccgcc 150
            |||||||||||| |||||| ||||||||
Sbjct: 9305 ccctcccgctcccgctcccgctcccgcc 9278

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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1068H08
          Length = 152794

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 123    ccctcccgctccggctccctctcccgcc 150
              |||||||||||| |||||| ||||||||
Sbjct: 131579 ccctcccgctcccgctcccgctcccgcc 131552

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>gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203488

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     cccttcccctcctcactctc 92
              ||||||||||||||||||||
Sbjct: 123972 cccttcccctcctcactctc 123953

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>dbj|BS000076.1| Pan troglodytes chromosome 22 clone:PTB-096O09, map 22, complete
            sequences
          Length = 186284

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 446  attctggagattcatatatagttt 469
            |||||| |||||||||||||||||
Sbjct: 6306 attctgtagattcatatatagttt 6283

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>dbj|BS000075.1| Pan troglodytes chromosome 22 clone:RP43-111A01, map 22, complete
             sequences
          Length = 160980

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   attctggagattcatatatagttt 469
             |||||| |||||||||||||||||
Sbjct: 81796 attctgtagattcatatatagttt 81773

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>gb|AC158406.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone P0047E03,
             complete sequence
          Length = 156641

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   attcatatatagttttgcag 474
             ||||||||||||||||||||
Sbjct: 11710 attcatatatagttttgcag 11729

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>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full
            insert sequence
          Length = 1884

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 123  ccctcccgctccggctccctctcccgcc 150
            |||||||||||| |||||| ||||||||
Sbjct: 1147 ccctcccgctcccgctcccgctcccgcc 1174

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>gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, complete sequence
          Length = 185083

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    cccccttcccctcctcactc 90
             ||||||||||||||||||||
Sbjct: 19243 cccccttcccctcctcactc 19224

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>gb|AE003655.3| Drosophila melanogaster chromosome 2L, section 64 of 83 of the complete
              sequence
          Length = 253771

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 418    ttgccaaaatctgattatggtaaa 441
              |||||||||| |||||||||||||
Sbjct: 209554 ttgccaaaatttgattatggtaaa 209531

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>gb|AE003572.4| Drosophila melanogaster chromosome X, section 67 of 74 of the complete
             sequence
          Length = 91383

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   gtaaagttgcttccaaatgt 325
             ||||||||||||||||||||
Sbjct: 25734 gtaaagttgcttccaaatgt 25715

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>gb|AF039403.1|AF039403 Gallus gallus paired box protein (Pax-1) gene, 5' flanking region and
            partial cds
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  ctcccgctccggctccctct 144
            ||||||||||||||||||||
Sbjct: 1122 ctcccgctccggctccctct 1141



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  ctcccgctccggctccctct 144
            ||||||||||||||||||||
Sbjct: 1066 ctcccgctccggctccctct 1085

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>dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, section 27/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   attctggagattcatatatagttt 469
             |||||| |||||||||||||||||
Sbjct: 69874 attctgtagattcatatatagttt 69851

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     ggcggccccaccggcgcccc 233
               ||||||||||||||||||||
Sbjct: 2113307 ggcggccccaccggcgcccc 2113288

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 455     attcatatatagttttgcag 474
               ||||||||||||||||||||
Sbjct: 6680819 attcatatatagttttgcag 6680838

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       ccccttcccctcctcactct 91
                ||||||||||||||||||||
Sbjct: 10612022 ccccttcccctcctcactct 10612041

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>emb|AL133241.3|CNS01DUE Human chromosome 14 DNA sequence BAC C-2560C21 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161234

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 120    gccccctcccgctccggctccctctccc 147
              |||| |||||||||| ||||||||||||
Sbjct: 136754 gcccgctcccgctcccgctccctctccc 136781

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>gb|AC165089.5| Mus musculus BAC clone RP23-85H2 from chromosome 19, complete sequence
          Length = 247216

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 119   agccccctcccgctccggctccctctcc 146
             |||||||||| ||||| |||||||||||
Sbjct: 13395 agccccctccagctccagctccctctcc 13368

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>dbj|AB006189.1| Drosophila melanogaster mRNA for Rab10, complete cds
          Length = 1613

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gtaaagttgcttccaaatgt 325
            ||||||||||||||||||||
Sbjct: 1214 gtaaagttgcttccaaatgt 1195

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>dbj|AP000472.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B258A5,
             LL56-APP region, complete sequence
          Length = 169328

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   attctggagattcatatatagttt 469
             |||||| |||||||||||||||||
Sbjct: 63591 attctgtagattcatatatagttt 63568


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,599,679
Number of Sequences: 3902068
Number of extensions: 3599679
Number of successful extensions: 75363
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 74864
Number of HSP's gapped (non-prelim): 519
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result