>NOL6_MOUSE (Q8R5K4) Nucleolar protein 6 (Nucleolar RNA-associated protein)|
           (Nrap)
          Length = 1141

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
 Frame = +1

Query: 43  LKLSELLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPEAASGFVRDLGLA------ 204
           L++ ELLK+ R S             V + I+ VPP   A      ++   G+       
Sbjct: 84  LQVEELLKEVRLSEKKKERIDNFLKEVTKRIQKVPPVPEAELTDQSWL-PAGVRVPLHQV 142

Query: 205 --AEKLAFSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKECFHEKDFLNHRYHAKRC 378
             A K +F FRPP  + + GS+      RPD+  D+ V +P+E   +KD LN RY  KR 
Sbjct: 143 PYAVKGSFRFRPPSQITVVGSYLLDTCMRPDINVDVAVTMPREILQDKDGLNQRYFRKRA 202

Query: 379 LYLRVIDKSLRSSPL 423
           LYL  +   L   PL
Sbjct: 203 LYLAHLAYHLAQDPL 217

>NOL6_HUMAN (Q9H6R4) Nucleolar protein 6 (Nucleolar RNA-associated protein)|
           (Nrap)
          Length = 1146

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 30/73 (41%), Positives = 39/73 (53%)
 Frame = +1

Query: 205 AEKLAFSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKECFHEKDFLNHRYHAKRCLY 384
           A K  F F PP  V + GS+  G   RPD+  D+ + +P+E   +KD LN RY  KR LY
Sbjct: 147 AVKGCFRFLPPAQVTVVGSYLLGTCIRPDINVDVALTMPREILQDKDGLNQRYFRKRALY 206

Query: 385 LRVIDKSLRSSPL 423
           L  +   L   PL
Sbjct: 207 LAHLAHHLAQDPL 219

>NOL6_XENLA (Q6NRY2) Nucleolar protein 6|
          Length = 1147

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 38/68 (55%)
 Frame = +1

Query: 220 FSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKECFHEKDFLNHRYHAKRCLYLRVID 399
           FSF PP  +++ GS+  G   +P++  DL V +P+E    KD LN RY  KR LYL  I 
Sbjct: 152 FSFLPPSSIKVVGSYLLGTCIKPEINVDLAVTMPQEILQVKDNLNQRYSRKRALYLAHIA 211

Query: 400 KSLRSSPL 423
             L  + L
Sbjct: 212 SHLTDNKL 219

>NOL6_XENTR (Q5M7P5) Nucleolar protein 6|
          Length = 1145

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 27/68 (39%), Positives = 38/68 (55%)
 Frame = +1

Query: 220 FSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKECFHEKDFLNHRYHAKRCLYLRVID 399
           F F PP  +++ GS+  G   +P++  DL V +P+E    KD LN RY  KR LYL  I 
Sbjct: 152 FCFLPPSSIKVVGSYLLGTCIKPEINVDLAVTMPQEILQAKDNLNQRYSRKRALYLAHIA 211

Query: 400 KSLRSSPL 423
             L ++ L
Sbjct: 212 SHLANNEL 219

>UTP22_YEAST (P53254) Nucleolar protein UTP22|
          Length = 1237

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +1

Query: 220 FSFRPPEVVRLAGSHAAGAVTRPDVAS-DLLVRLPKECFHEKDFLNHRYHAKRCLYLRVI 396
           F+++ P++  +        + +P+ +S D L+ +PKE F +KDFLN R   KR +YL  +
Sbjct: 176 FNYKKPDISLIGSFALKAGIYQPNGSSIDTLLTMPKELFEKKDFLNFRCLHKRSVYLAYL 235

Query: 397 DKSL 408
              L
Sbjct: 236 THHL 239

>YMP3_STRCO (P43168) Hypothetical oxidoreductase in mprA 5'region (EC 1.-.-.-)|
           (ORF3)
          Length = 251

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
 Frame = +1

Query: 70  ARPSATSLRAAGEATDAVGELIKSVPPQQAAPEA---------ASGFVRDL-----GLAA 207
           ARPS    +AAGE T A+G  +++VP     PE+         A+G V DL     G+A 
Sbjct: 41  ARPSPALEKAAGELT-ALGAEVRTVPFDALDPESHQASLGPVFAAGDV-DLVLLRFGIAG 98

Query: 208 EKLAFSFRPPEVVRLAGSHAAGAV 279
           ++     RP + VR+A ++  GAV
Sbjct: 99  DQARDESRPLDAVRVAQTNYTGAV 122

>Y2559_MYCTU (Q50739) Hypothetical protein Rv2559c/MT2636|
          Length = 452

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 13  AMVSAEYSIDLKLSELLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPEAASGFVRD 192
           A+  A  ++DL +      AR + T+L  A EA  A GEL+     +++  +AA  + RD
Sbjct: 202 AVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRD 261

>SRP54_MYCLE (O33013) Signal recognition particle protein (Fifty-four homolog)|
          Length = 521

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +1

Query: 145 PPQQAAPEAASGFVRDLGLAAEKLAFSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPK 324
           P QQ         +  LG    +LAF+  PP VV LAG   +G  T   +A  L VRL +
Sbjct: 70  PAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTT---LAGKLAVRLRR 126

Query: 325 E 327
           +
Sbjct: 127 Q 127

>ASPH_HUMAN (Q12797) Aspartyl/asparaginyl beta-hydroxylase (EC 1.14.11.16)|
           (Aspartate beta-hydroxylase) (ASP beta-hydroxylase)
           (Peptide-aspartate beta-dioxygenase)
          Length = 757

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 29/104 (27%), Positives = 42/104 (40%)
 Frame = +1

Query: 46  KLSELLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPEAASGFVRDLGLAAEKLAFS 225
           K  + +K    +A  LR  G+  +AV    + V     +P A  G  +      + LA  
Sbjct: 336 KFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQ----CEDDLAEK 391

Query: 226 FRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKECFHEKDFLNH 357
            R  EV+R A        + PDV +DLL    K     + FL H
Sbjct: 392 RRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGH 435

>SRP54_MYCTU (P66844) Signal recognition particle protein (Fifty-four homolog)|
          Length = 525

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +1

Query: 145 PPQQAAPEAASGFVRDLGLAAEKLAFSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRL 318
           P QQ         +  LG    +LAF+  PP VV LAG   +G  T   +A  L  RL
Sbjct: 70  PAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTT---LAGKLAARL 124

>SRP54_MYCBO (P66845) Signal recognition particle protein (Fifty-four homolog)|
          Length = 525

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +1

Query: 145 PPQQAAPEAASGFVRDLGLAAEKLAFSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRL 318
           P QQ         +  LG    +LAF+  PP VV LAG   +G  T   +A  L  RL
Sbjct: 70  PAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTT---LAGKLAARL 124

>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)|
          Length = 325

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -3

Query: 318 QADEKVRGDVG----PGDRAGRVAPGEPHHLRRPEGKR*LFGREA-QVPHEPRG 172
           + +  VRGD+G    PG +     PGEP  LR PEG R L G E  + P  PRG
Sbjct: 88  EGEAGVRGDLGDMGQPGPKGSVGNPGEPG-LRGPEGIRGLPGVEGPRGPPGPRG 140

>ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF|
          Length = 551

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 312 DEKVRGDVGPGDRAGRVAP 256
           D+KVRGDVGPG+  G + P
Sbjct: 512 DKKVRGDVGPGESGGPLTP 530

>VSX1_CHICK (Q9IAL2) Visual system homeobox 1 (Transcription factor VSX1)|
           (Homeobox protein Chx10-1)
          Length = 350

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 64  KQARPSATSLRAAGEA-TDAVGELIKSVPPQQAAPEAASGF 183
           + ARP    LRA G A TD +G   +  PP  AAP  A G+
Sbjct: 38  RSARPGGAGLRAKGFAITDLLGLEAELQPPPGAAPGPAGGY 78

>ASPH_BOVIN (Q28056) Aspartyl/asparaginyl beta-hydroxylase (EC 1.14.11.16)|
           (Aspartate beta-hydroxylase) (ASP beta-hydroxylase)
           (Peptide-aspartate beta-dioxygenase)
          Length = 754

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 27/104 (25%), Positives = 42/104 (40%)
 Frame = +1

Query: 46  KLSELLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPEAASGFVRDLGLAAEKLAFS 225
           K  + +K    +A  LR  G+  +AV    + V     +P A  G  +      + LA  
Sbjct: 332 KFDKTIKAELDAAEKLRKRGKIEEAVNAFEELVRKYPQSPGARYGKAQ----CEDDLAEK 387

Query: 226 FRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKECFHEKDFLNH 357
            R  E++R A      A + PD  +DL+    K     + FL H
Sbjct: 388 RRSNEILRRAIETYQEAASLPDAPTDLVKLSLKRRSDRQQFLGH 431

>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 118 AVGELIKSVPPQQAAPEAASGFVRDLGLAAEKLAFSFRPPEVVRLAGSHAAGAVTRPDVA 297
           + GE++K  PP + +P+A +          +  +F+ R  ++V+       G+ T   VA
Sbjct: 534 STGEILKPPPPSEGSPKAVASSPAANNSEVKMTSFAERKKQLVKAEAESGLGSPTSTPVA 593

Query: 298 SDLL 309
            + L
Sbjct: 594 PEAL 597

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +2

Query: 224 PSGRRRWCGSPGATRPARSPGPTSP 298
           P GRRR   SP  TR  RSP P  P
Sbjct: 542 PRGRRRRSPSPPPTRRRRSPSPAPP 566

>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 318 QADEKVRGDVG----PGDRAGRVAPGEPHHLRRPEGKR*LFGREA-QVPHEPRG 172
           + +   RGD+G    PG +     PGEP  LR PEG R L G E  + P  PRG
Sbjct: 684 EGEAGARGDLGDMGQPGPKGSVGNPGEPG-LRGPEGIRGLPGVEGPRGPPGPRG 736

>DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein dumpy-2)|
          Length = 360

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 230 GRRRWCGSPGATRPARSPGPTSP 298
           G + W G PGA  P   PGP  P
Sbjct: 268 GEKGWPGPPGAPGPGGMPGPNGP 290

>LATA_LATMA (P23631) Alpha-latrotoxin precursor (Alpha-LTX)|
          Length = 1401

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +1

Query: 43  LKLSELLKQARPSATSLRAAGE--ATDAVGELIKSVPPQQAAPEAASGFVRDLGLAAEKL 216
           + + E++++A  S   +R  GE    +   E+   +  QQ   + AS  + DL       
Sbjct: 2   ISVGEIMERANHSLVRMRREGEDLTLEEKAEICSELELQQKYVDIASNIIGDLSSL---- 57

Query: 217 AFSFRPPEVVRLAGSHAAGAVTRPDVASDLL 309
                 P   ++AG+ AA A+T   VAS  L
Sbjct: 58  ------PIAGKIAGTIAAAAMTATHVASGRL 82

>ISPH_RHIME (Q92RG2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 350

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
 Frame = +1

Query: 175 SGFVRDLGLAAEKLAFSFRPPEVVRLAGSHAAGAVTRPDVASDLLVRLPKE----CFHEK 342
           SGFVR  G+     + + + P  +RL G    G     D A  ++V   KE     +   
Sbjct: 4   SGFVRSTGVFMMAPSAAAKTPITIRLCGPR--GFCAGVDRAIQIVVLALKEFGAPVYVRH 61

Query: 343 DFLNHRY-----HAKRCLYLRVIDK---SLRSSPLIRRFHGLP 447
           + +++RY      AK  +++  +D+     R  P++   HG+P
Sbjct: 62  EIVHNRYVVEGLEAKGAIFVEELDEIPPEHRKQPVVFSAHGVP 104

>RPOB_STAPU (Q32RW5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1068

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = -3

Query: 306 KVRGDVGPGD-RAGRVAPGE-PHHLRRPEGK--R*LFGREAQVPHE 181
           K+   V PGD   G++AP E PH LR PEGK  + +FG +A    E
Sbjct: 727 KIGAWVEPGDVLVGKLAPLEAPHLLRSPEGKLLQAIFGVQAITTRE 772

>DNAE2_GLUOX (Q5HXU1) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 901

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
 Frame = +1

Query: 94  RAAGEATDAVGELIKSVPPQQAAPEAASGFVRDLGLAAE--KLAFSFRPPEVV----RLA 255
           +  G   D  G+L K +    A P+       DLGL  +  +L+ +F    ++    R  
Sbjct: 281 KVLGLPEDLTGQLSKHIASSLADPDLCKARAADLGLNLKDRRLSLTFHLARLLLGFPRQL 340

Query: 256 GSHAAGAVTRPDVASDLLVRLP 321
           G+H  G V   D   +L+  +P
Sbjct: 341 GTHPGGFVLTEDRLDELVPLMP 362

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 285  PGDRAGRVAPGEPHHLRRP---EGKR*LFGREAQVPHEPRGS 169
            PG+ +    P EPH  R P   EG+R    RE  +P  P G+
Sbjct: 1697 PGESSSASEPSEPHRRRPPASHEGERKELPREQPLPPGPIGT 1738

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 227 SGRRRWCGSPGATRPARSPGPTSP 298
           SGRRR   SP  TR  RSP P  P
Sbjct: 557 SGRRRRSPSPPPTRRRRSPSPAPP 580

>ATS16_HUMAN (Q8TE57) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 16)
           (ADAM-TS 16) (ADAM-TS16)
          Length = 1224

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 269 AAWLPASRTTSGGRKENASFSAARPRSLTNPEAASGAACCGGT 141
           ++W P SRT  GG        + R R  TNP+ + G   C G+
Sbjct: 593 SSWSPCSRTCGGG-------VSHRSRLCTNPKPSHGGKFCEGS 628

>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 251 SRTTSGGRKENASFSAARPRSLTNPEAASGAACC 150
           SR  SGG   N   S   PRS  +P    G A C
Sbjct: 527 SRGGSGGNSSNDKLSGPAPRSRLDPAKVLGTALC 560

>HAT2_ASHGO (Q75C99) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 423

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 393 HRQELEVFSFNPQVSWSTFQTRDE 464
           HR  +  FSFNPQ+ W    T ++
Sbjct: 373 HRSPVNEFSFNPQIPWLLASTEED 396

>TNKS2_HUMAN (Q9H2K2) Tankyrase 2 (EC 2.4.2.30) (TANK2) (Tankyrase II) (TNKS-2)|
           (TRF1-interacting ankyrin-related ADP-ribose polymerase
           2) (Tankyrase-like protein) (Tankyrase-related protein)
          Length = 1166

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 251 SPGATRPARSPGPTSPLTFSSA 316
           SPGAT  A S GP+SP + S+A
Sbjct: 817 SPGATADALSSGPSSPSSLSAA 838

>YJP1_SCHPO (Q9P6S0) Hypothetical threonine-rich protein C1742.01 precursor|
          Length = 1563

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -1

Query: 311 TRRSEATSGLVTAPAAWLPASRTTSGGRKENA-----SFSAARPRSLTNPEAASGAACCG 147
           T   EA+  +  +P+ +LP S TTSG +  NA     +F A    +  NP         G
Sbjct: 123 TSGKEASYAIQASPSTFLPDSTTTSGSQVSNAVEASSTFVADTTSTSCNPATVLIVTTSG 182

Query: 146 GT 141
            T
Sbjct: 183 ST 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,906,152
Number of Sequences: 219361
Number of extensions: 1003831
Number of successful extensions: 4556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4544
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)