ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK068475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 8e-61
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
4emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 141 2e-30
5gb|AY573970.1| Oryza sativa (japonica cultivar-group) clone Tel ... 44 0.40
6emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 44 0.40
7gb|AC093250.3| Homo sapiens chromosome 5 clone RP11-147O19, comp... 42 1.6
8gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete... 42 1.6
9gb|AE010421.1| Methanopyrus kandleri AV19 section 120 of 157 of ... 40 6.3
10ref|XM_475108.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
11ref|XM_476719.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
12gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, c... 40 6.3
13gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
14gb|AC122376.4| Mus musculus BAC clone RP23-472G10 from chromosom... 40 6.3
15emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chro... 40 6.3
16gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.3
17gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 6.3
18emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
19emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 40 6.3
20gb|AC106740.3| Homo sapiens chromosome 5 clone RP11-100E22, comp... 40 6.3
21gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 40 6.3
22gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, c... 40 6.3
23gb|AC009470.4| Homo sapiens BAC clone RP11-125K7 from 11, comple... 40 6.3
24gb|AC010371.7| Homo sapiens chromosome 5 clone CTD-2049O13, comp... 40 6.3
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
29dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.3
30dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 40 6.3
31dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
32gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.3
33gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
34gb|AC152167.3| Mus musculus BAC clone RP23-330B16 from 7, comple... 40 6.3
35dbj|AP001266.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.3

>dbj|AK068475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152H07, full
           insert sequence
          Length = 4125

 Score =  242 bits (122), Expect = 8e-61
 Identities = 357/432 (82%), Gaps = 5/432 (1%)
 Strand = Plus / Plus

                                                                       
Query: 32  actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91
           ||||||||| |  |||||||||||  |||||| || | | ||||||||||||| || | |
Sbjct: 117 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 176

                                                                       
Query: 92  tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151
           ||||||||||  | |||||| | || ||||||| ||  ||| |||||||  | ||  |||
Sbjct: 177 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 236

                                                                       
Query: 152 agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211
           |||||||| | |  ||||||| | | |||||||||||||||||||| |||||||  || |
Sbjct: 237 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 296

                                                                       
Query: 212 agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggccg 271
           |||| |||||  | ||||||||||||||||| || ||| |||| ||||||||||||||||
Sbjct: 297 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 356

                                                                       
Query: 272 gcg---cggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaaggaat 328
           |||   | ||| | |||||||||||| || ||||||| ||||| ||||||||||||||||
Sbjct: 357 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaaggaat 416

                                                                       
Query: 329 gttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtctttacctcc 388
           | || |||||||| ||||| ||||| ||| | |||||||| |||||||||||||||||||
Sbjct: 417 gcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtctttacctcc 476

                                                                       
Query: 389 gcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggtctacct 447
             ||||| || || ||||||||||||||||| |||| || | || |||||||||||||||
Sbjct: 477 atgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggtctacct 536

                       
Query: 448 tcc-agacgagg 458
           ||| ||||||||
Sbjct: 537 tcctagacgagg 548



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  141 bits (71), Expect = 2e-30
 Identities = 241/297 (81%), Gaps = 3/297 (1%)
 Strand = Plus / Plus

                                                                           
Query: 32      actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91
               ||||||||| |  |||||||||||  |||||| || | | ||||||||||||| || | |
Sbjct: 3359797 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 3359856

                                                                           
Query: 92      tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151
               ||||||||||  | |||||| | || ||||||| ||  ||| |||||||  | ||  |||
Sbjct: 3359857 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 3359916

                                                                           
Query: 152     agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211
               |||||||| | |  ||||||| | | |||||||||||||||||||| |||||||  || |
Sbjct: 3359917 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 3359976

                                                                           
Query: 212     agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggc-- 269
               |||| |||||  | ||||||||||||||||| || ||| |||| ||||||||||||||  
Sbjct: 3359977 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 3360036

                                                                        
Query: 270     -cggcgcggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaagg 325
                |||||| ||| | |||||||||||| || ||||||| ||||| |||||||||||||
Sbjct: 3360037 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaagg 3360093



 Score =  107 bits (54), Expect = 3e-20
 Identities = 119/138 (86%), Gaps = 2/138 (1%)
 Strand = Plus / Plus

                                                                           
Query: 323     aggaatgttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtcttt 382
               ||||||| || |||||||| ||||| ||||| ||| | |||||||| |||||||||||||
Sbjct: 3360736 aggaatgcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtcttt 3360795

                                                                           
Query: 383     acctccgcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggt 441
               ||||||  ||||| || || ||||||||||||||||| |||| || | || |||||||||
Sbjct: 3360796 acctccatgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggt 3360855

                                 
Query: 442     ctaccttcc-agacgagg 458
               ||||||||| ||||||||
Sbjct: 3360856 ctaccttcctagacgagg 3360873



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  141 bits (71), Expect = 2e-30
 Identities = 241/297 (81%), Gaps = 3/297 (1%)
 Strand = Plus / Plus

                                                                           
Query: 32      actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91
               ||||||||| |  |||||||||||  |||||| || | | ||||||||||||| || | |
Sbjct: 3359742 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 3359801

                                                                           
Query: 92      tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151
               ||||||||||  | |||||| | || ||||||| ||  ||| |||||||  | ||  |||
Sbjct: 3359802 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 3359861

                                                                           
Query: 152     agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211
               |||||||| | |  ||||||| | | |||||||||||||||||||| |||||||  || |
Sbjct: 3359862 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 3359921

                                                                           
Query: 212     agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggc-- 269
               |||| |||||  | ||||||||||||||||| || ||| |||| ||||||||||||||  
Sbjct: 3359922 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 3359981

                                                                        
Query: 270     -cggcgcggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaagg 325
                |||||| ||| | |||||||||||| || ||||||| ||||| |||||||||||||
Sbjct: 3359982 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaagg 3360038



 Score =  107 bits (54), Expect = 3e-20
 Identities = 119/138 (86%), Gaps = 2/138 (1%)
 Strand = Plus / Plus

                                                                           
Query: 323     aggaatgttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtcttt 382
               ||||||| || |||||||| ||||| ||||| ||| | |||||||| |||||||||||||
Sbjct: 3360681 aggaatgcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtcttt 3360740

                                                                           
Query: 383     acctccgcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggt 441
               ||||||  ||||| || || ||||||||||||||||| |||| || | || |||||||||
Sbjct: 3360741 acctccatgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggt 3360800

                                 
Query: 442     ctaccttcc-agacgagg 458
               ||||||||| ||||||||
Sbjct: 3360801 ctaccttcctagacgagg 3360818



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>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score =  141 bits (71), Expect = 2e-30
 Identities = 241/297 (81%), Gaps = 3/297 (1%)
 Strand = Plus / Plus

                                                                         
Query: 32    actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91
             ||||||||| |  |||||||||||  |||||| || | | ||||||||||||| || | |
Sbjct: 38850 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 38909

                                                                         
Query: 92    tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151
             ||||||||||  | |||||| | || ||||||| ||  ||| |||||||  | ||  |||
Sbjct: 38910 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 38969

                                                                         
Query: 152   agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211
             |||||||| | |  ||||||| | | |||||||||||||||||||| |||||||  || |
Sbjct: 38970 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 39029

                                                                         
Query: 212   agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggc-- 269
             |||| |||||  | ||||||||||||||||| || ||| |||| ||||||||||||||  
Sbjct: 39030 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 39089

                                                                      
Query: 270   -cggcgcggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaagg 325
              |||||| ||| | |||||||||||| || ||||||| ||||| |||||||||||||
Sbjct: 39090 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaagg 39146



 Score =  107 bits (54), Expect = 3e-20
 Identities = 119/138 (86%), Gaps = 2/138 (1%)
 Strand = Plus / Plus

                                                                         
Query: 323   aggaatgttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtcttt 382
             ||||||| || |||||||| ||||| ||||| ||| | |||||||| |||||||||||||
Sbjct: 39789 aggaatgcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtcttt 39848

                                                                         
Query: 383   acctccgcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggt 441
             ||||||  ||||| || || ||||||||||||||||| |||| || | || |||||||||
Sbjct: 39849 acctccatgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggt 39908

                               
Query: 442   ctaccttcc-agacgagg 458
             ||||||||| ||||||||
Sbjct: 39909 ctaccttcctagacgagg 39926



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>gb|AY573970.1| Oryza sativa (japonica cultivar-group) clone Tel FR4
           telomere-associated sequence
          Length = 219

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 32  actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91
           ||||||||| |  |||||||||||  |||||| || | | ||||||||||||| || | |
Sbjct: 109 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 50

                     
Query: 92  tccgcgccgc 101
           ||||||||||
Sbjct: 49  tccgcgccgc 40



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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 237    ggaggtggtgcggctcgccggg 258
              ||||||||||||||||||||||
Sbjct: 220847 ggaggtggtgcggctcgccggg 220868



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>gb|AC093250.3| Homo sapiens chromosome 5 clone RP11-147O19, complete sequence
          Length = 75214

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 330   ttttcatgaaaaggatttcctaaat 354
             |||||||||| ||||||||||||||
Sbjct: 33214 ttttcatgaataggatttcctaaat 33238



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>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence
          Length = 53591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 242   tggtgcggctcgccgggagccacgc 266
             ||||||||||| |||||||||||||
Sbjct: 25330 tggtgcggctcaccgggagccacgc 25354



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>gb|AE010421.1| Methanopyrus kandleri AV19 section 120 of 157 of the complete genome
          Length = 12174

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   ggaggccaccgacgccgtcgggga 128
             |||||||| |||||||||||||||
Sbjct: 11083 ggaggccagcgacgccgtcgggga 11106



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>ref|XM_475108.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 ccgacgccgtcggggagctc 132
           ||||||||||||||||||||
Sbjct: 561 ccgacgccgtcggggagctc 542



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>ref|XM_476719.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2457

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ggccgccggaggtggtgcgg 249
            ||||||||||||||||||||
Sbjct: 2141 ggccgccggaggtggtgcgg 2160



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>gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, complete sequence
          Length = 173430

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cgcaatggtctccgccgagt 31
             ||||||||||||||||||||
Sbjct: 82072 cgcaatggtctccgccgagt 82091



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>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
             complete sequence
          Length = 148373

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   ccgacgccgtcggggagctc 132
             ||||||||||||||||||||
Sbjct: 47351 ccgacgccgtcggggagctc 47332



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>gb|AC122376.4| Mus musculus BAC clone RP23-472G10 from chromosome 7, complete sequence
          Length = 183918

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 314   gcttgcctaaggaatgttttcatg 337
             |||||||||| |||||||||||||
Sbjct: 74514 gcttgcctaaagaatgttttcatg 74537



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>emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 91827

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   tttcatgaaaaggatttcct 350
             ||||||||||||||||||||
Sbjct: 32932 tttcatgaaaaggatttcct 32951



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 263    acgcggccggcgcggtcaccaggcccga 290
              ||||||||||||||| |||||| |||||
Sbjct: 462908 acgcggccggcgcggccaccagccccga 462935



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      cgagctcctcaagcaagcgc 73
               ||||||||||||||||||||
Sbjct: 1132109 cgagctcctcaagcaagcgc 1132090



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>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08,
             complete sequence
          Length = 106975

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   ccgacgccgtcggggagctc 132
             ||||||||||||||||||||
Sbjct: 70411 ccgacgccgtcggggagctc 70430



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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 96     cgccgccggggaggccaccgacgccgtc 123
              ||||| ||| ||||||||||||||||||
Sbjct: 126207 cgccgacggcgaggccaccgacgccgtc 126234



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>gb|AC106740.3| Homo sapiens chromosome 5 clone RP11-100E22, complete sequence
          Length = 155443

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 335  atgaaaaggatttcctaaatcacc 358
            |||||||| |||||||||||||||
Sbjct: 5923 atgaaaagtatttcctaaatcacc 5946



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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   ccgacgccgtcggggagctc 132
             ||||||||||||||||||||
Sbjct: 61259 ccgacgccgtcggggagctc 61240



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>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence
          Length = 144359

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   ccgacgccgtcggggagctc 132
             ||||||||||||||||||||
Sbjct: 45486 ccgacgccgtcggggagctc 45467



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>gb|AC009470.4| Homo sapiens BAC clone RP11-125K7 from 11, complete sequence
          Length = 162511

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   cgggagccacgcggccggcgcggt 278
             |||||||| |||||||||||||||
Sbjct: 25639 cgggagccgcgcggccggcgcggt 25616



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>gb|AC010371.7| Homo sapiens chromosome 5 clone CTD-2049O13, complete sequence
          Length = 62028

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 335   atgaaaaggatttcctaaatcacc 358
             |||||||| |||||||||||||||
Sbjct: 39060 atgaaaagtatttcctaaatcacc 39037



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 113      ccgacgccgtcggggagctc 132
                ||||||||||||||||||||
Sbjct: 19915603 ccgacgccgtcggggagctc 19915622



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     ccgacgccgtcggggagctc 132
               ||||||||||||||||||||
Sbjct: 3612645 ccgacgccgtcggggagctc 3612626



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     ggccgccggaggtggtgcgg 249
               ||||||||||||||||||||
Sbjct: 3518631 ggccgccggaggtggtgcgg 3518612



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 113      ccgacgccgtcggggagctc 132
                ||||||||||||||||||||
Sbjct: 17053984 ccgacgccgtcggggagctc 17053965



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     ccggcgcggtcaccaggccc 288
               ||||||||||||||||||||
Sbjct: 2770853 ccggcgcggtcaccaggccc 2770872



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>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 80    gcgccacctctctccgcgccgccggggaggcc 111
             |||||||||| |||| ||||||||||||||||
Sbjct: 10012 gcgccacctc-ctccacgccgccggggaggcc 9982



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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ggccgccggaggtggtgcgg 249
             ||||||||||||||||||||
Sbjct: 56581 ggccgccggaggtggtgcgg 56562



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 252     cgccgggagccacgcggccggcgc 275
               ||||||||||||||||| ||||||
Sbjct: 2628035 cgccgggagccacgcggtcggcgc 2628058



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     ccgacgccgtcggggagctc 132
               ||||||||||||||||||||
Sbjct: 3612566 ccgacgccgtcggggagctc 3612547



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>gb|AC152167.3| Mus musculus BAC clone RP23-330B16 from 7, complete sequence
          Length = 215518

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   gcttgcctaaggaatgttttcatg 337
             |||||||||| |||||||||||||
Sbjct: 81119 gcttgcctaaagaatgttttcatg 81096



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>dbj|AP001266.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-770G2, complete
              sequence
          Length = 175872

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 255    cgggagccacgcggccggcgcggt 278
              |||||||| |||||||||||||||
Sbjct: 117751 cgggagccgcgcggccggcgcggt 117728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,994,310
Number of Sequences: 3902068
Number of extensions: 2994310
Number of successful extensions: 58823
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58216
Number of HSP's gapped (non-prelim): 596
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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