Clone Name | bastl31e07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK068475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152H07, full insert sequence Length = 4125 Score = 242 bits (122), Expect = 8e-61 Identities = 357/432 (82%), Gaps = 5/432 (1%) Strand = Plus / Plus Query: 32 actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91 ||||||||| | ||||||||||| |||||| || | | ||||||||||||| || | | Sbjct: 117 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 176 Query: 92 tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151 |||||||||| | |||||| | || ||||||| || ||| ||||||| | || ||| Sbjct: 177 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 236 Query: 152 agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211 |||||||| | | ||||||| | | |||||||||||||||||||| ||||||| || | Sbjct: 237 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 296 Query: 212 agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggccg 271 |||| ||||| | ||||||||||||||||| || ||| |||| |||||||||||||||| Sbjct: 297 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 356 Query: 272 gcg---cggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaaggaat 328 ||| | ||| | |||||||||||| || ||||||| ||||| |||||||||||||||| Sbjct: 357 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaaggaat 416 Query: 329 gttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtctttacctcc 388 | || |||||||| ||||| ||||| ||| | |||||||| ||||||||||||||||||| Sbjct: 417 gcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtctttacctcc 476 Query: 389 gcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggtctacct 447 ||||| || || ||||||||||||||||| |||| || | || ||||||||||||||| Sbjct: 477 atgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggtctacct 536 Query: 448 tcc-agacgagg 458 ||| |||||||| Sbjct: 537 tcctagacgagg 548
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 141 bits (71), Expect = 2e-30 Identities = 241/297 (81%), Gaps = 3/297 (1%) Strand = Plus / Plus Query: 32 actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91 ||||||||| | ||||||||||| |||||| || | | ||||||||||||| || | | Sbjct: 3359797 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 3359856 Query: 92 tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151 |||||||||| | |||||| | || ||||||| || ||| ||||||| | || ||| Sbjct: 3359857 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 3359916 Query: 152 agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211 |||||||| | | ||||||| | | |||||||||||||||||||| ||||||| || | Sbjct: 3359917 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 3359976 Query: 212 agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggc-- 269 |||| ||||| | ||||||||||||||||| || ||| |||| |||||||||||||| Sbjct: 3359977 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 3360036 Query: 270 -cggcgcggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaagg 325 |||||| ||| | |||||||||||| || ||||||| ||||| ||||||||||||| Sbjct: 3360037 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaagg 3360093 Score = 107 bits (54), Expect = 3e-20 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 323 aggaatgttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtcttt 382 ||||||| || |||||||| ||||| ||||| ||| | |||||||| ||||||||||||| Sbjct: 3360736 aggaatgcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtcttt 3360795 Query: 383 acctccgcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggt 441 |||||| ||||| || || ||||||||||||||||| |||| || | || ||||||||| Sbjct: 3360796 acctccatgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggt 3360855 Query: 442 ctaccttcc-agacgagg 458 ||||||||| |||||||| Sbjct: 3360856 ctaccttcctagacgagg 3360873
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 141 bits (71), Expect = 2e-30 Identities = 241/297 (81%), Gaps = 3/297 (1%) Strand = Plus / Plus Query: 32 actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91 ||||||||| | ||||||||||| |||||| || | | ||||||||||||| || | | Sbjct: 3359742 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 3359801 Query: 92 tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151 |||||||||| | |||||| | || ||||||| || ||| ||||||| | || ||| Sbjct: 3359802 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 3359861 Query: 152 agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211 |||||||| | | ||||||| | | |||||||||||||||||||| ||||||| || | Sbjct: 3359862 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 3359921 Query: 212 agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggc-- 269 |||| ||||| | ||||||||||||||||| || ||| |||| |||||||||||||| Sbjct: 3359922 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 3359981 Query: 270 -cggcgcggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaagg 325 |||||| ||| | |||||||||||| || ||||||| ||||| ||||||||||||| Sbjct: 3359982 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaagg 3360038 Score = 107 bits (54), Expect = 3e-20 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 323 aggaatgttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtcttt 382 ||||||| || |||||||| ||||| ||||| ||| | |||||||| ||||||||||||| Sbjct: 3360681 aggaatgcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtcttt 3360740 Query: 383 acctccgcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggt 441 |||||| ||||| || || ||||||||||||||||| |||| || | || ||||||||| Sbjct: 3360741 acctccatgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggt 3360800 Query: 442 ctaccttcc-agacgagg 458 ||||||||| |||||||| Sbjct: 3360801 ctaccttcctagacgagg 3360818
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 141 bits (71), Expect = 2e-30 Identities = 241/297 (81%), Gaps = 3/297 (1%) Strand = Plus / Plus Query: 32 actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91 ||||||||| | ||||||||||| |||||| || | | ||||||||||||| || | | Sbjct: 38850 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 38909 Query: 92 tccgcgccgccggggaggccaccgacgccgtcggggagctcatcaagagcgtgcctccgc 151 |||||||||| | |||||| | || ||||||| || ||| ||||||| | || ||| Sbjct: 38910 tccgcgccgcgagcgaggccgcggatgccgtcgcgggcctcgtcaagaggatcccgacgc 38969 Query: 152 agcaggcggcgccggaggctgcctcggggttcgtgagggacctgggcctcgcggccgaaa 211 |||||||| | | ||||||| | | |||||||||||||||||||| ||||||| || | Sbjct: 38970 agcaggcgactcacgaggctgtcgctgggttcgtgagggacctggggctcgcgggggaga 39029 Query: 212 agctagcgttttccttccggccgccggaggtggtgcggctcgccgggagccacgcggc-- 269 |||| ||||| | ||||||||||||||||| || ||| |||| |||||||||||||| Sbjct: 39030 agctcgcgttcacgttccggccgccggaggtcgttcgggtcgctgggagccacgcggccg 39089 Query: 270 -cggcgcggtcaccaggcccgacgtcgcctctgaccttctcgtccgcttgcctaagg 325 |||||| ||| | |||||||||||| || ||||||| ||||| ||||||||||||| Sbjct: 39090 gcggcgccgtcgcgaggcccgacgtctccgctgacctcctcgtgcgcttgcctaagg 39146 Score = 107 bits (54), Expect = 3e-20 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 323 aggaatgttttcatgaaaaggatttcctaaatcaccggtaccatgctaagaggtgtcttt 382 ||||||| || |||||||| ||||| ||||| ||| | |||||||| ||||||||||||| Sbjct: 39789 aggaatgcttccatgaaaaagattttctaaaccacagataccatgcaaagaggtgtcttt 39848 Query: 383 acctccgcgtcatcgacaagagcttgaggtcttctcctttaa-tccgcaggtttcatggt 441 |||||| ||||| || || ||||||||||||||||| |||| || | || ||||||||| Sbjct: 39849 acctccatgtcattgagaaaagcttgaggtcttctccattaattcagaagatttcatggt 39908 Query: 442 ctaccttcc-agacgagg 458 ||||||||| |||||||| Sbjct: 39909 ctaccttcctagacgagg 39926
>gb|AY573970.1| Oryza sativa (japonica cultivar-group) clone Tel FR4 telomere-associated sequence Length = 219 Score = 44.1 bits (22), Expect = 0.40 Identities = 58/70 (82%) Strand = Plus / Minus Query: 32 actccatcgacctcaagctctccgagctcctcaagcaagcgcggccgagcgccacctctc 91 ||||||||| | ||||||||||| |||||| || | | ||||||||||||| || | | Sbjct: 109 actccatcgtctacaagctctccgctctcctcgaggaggtgcggccgagcgccgccgcac 50 Query: 92 tccgcgccgc 101 |||||||||| Sbjct: 49 tccgcgccgc 40
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ggaggtggtgcggctcgccggg 258 |||||||||||||||||||||| Sbjct: 220847 ggaggtggtgcggctcgccggg 220868
>gb|AC093250.3| Homo sapiens chromosome 5 clone RP11-147O19, complete sequence Length = 75214 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 ttttcatgaaaaggatttcctaaat 354 |||||||||| |||||||||||||| Sbjct: 33214 ttttcatgaataggatttcctaaat 33238
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 tggtgcggctcgccgggagccacgc 266 ||||||||||| ||||||||||||| Sbjct: 25330 tggtgcggctcaccgggagccacgc 25354
>gb|AE010421.1| Methanopyrus kandleri AV19 section 120 of 157 of the complete genome Length = 12174 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 ggaggccaccgacgccgtcgggga 128 |||||||| ||||||||||||||| Sbjct: 11083 ggaggccagcgacgccgtcgggga 11106
>ref|XM_475108.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 561 ccgacgccgtcggggagctc 542
>ref|XM_476719.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2457 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ggccgccggaggtggtgcgg 249 |||||||||||||||||||| Sbjct: 2141 ggccgccggaggtggtgcgg 2160
>gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, complete sequence Length = 173430 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cgcaatggtctccgccgagt 31 |||||||||||||||||||| Sbjct: 82072 cgcaatggtctccgccgagt 82091
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 47351 ccgacgccgtcggggagctc 47332
>gb|AC122376.4| Mus musculus BAC clone RP23-472G10 from chromosome 7, complete sequence Length = 183918 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 gcttgcctaaggaatgttttcatg 337 |||||||||| ||||||||||||| Sbjct: 74514 gcttgcctaaagaatgttttcatg 74537
>emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chromosome 6 Contains part of the LAMA2 gene for laminin, alpha 2 (merosin, congenital muscular dystrophy) (LAMM), complete sequence Length = 91827 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tttcatgaaaaggatttcct 350 |||||||||||||||||||| Sbjct: 32932 tttcatgaaaaggatttcct 32951
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 acgcggccggcgcggtcaccaggcccga 290 ||||||||||||||| |||||| ||||| Sbjct: 462908 acgcggccggcgcggccaccagccccga 462935
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgagctcctcaagcaagcgc 73 |||||||||||||||||||| Sbjct: 1132109 cgagctcctcaagcaagcgc 1132090
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 70411 ccgacgccgtcggggagctc 70430
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccggggaggccaccgacgccgtc 123 ||||| ||| |||||||||||||||||| Sbjct: 126207 cgccgacggcgaggccaccgacgccgtc 126234
>gb|AC106740.3| Homo sapiens chromosome 5 clone RP11-100E22, complete sequence Length = 155443 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 atgaaaaggatttcctaaatcacc 358 |||||||| ||||||||||||||| Sbjct: 5923 atgaaaagtatttcctaaatcacc 5946
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 61259 ccgacgccgtcggggagctc 61240
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 45486 ccgacgccgtcggggagctc 45467
>gb|AC009470.4| Homo sapiens BAC clone RP11-125K7 from 11, complete sequence Length = 162511 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cgggagccacgcggccggcgcggt 278 |||||||| ||||||||||||||| Sbjct: 25639 cgggagccgcgcggccggcgcggt 25616
>gb|AC010371.7| Homo sapiens chromosome 5 clone CTD-2049O13, complete sequence Length = 62028 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 atgaaaaggatttcctaaatcacc 358 |||||||| ||||||||||||||| Sbjct: 39060 atgaaaagtatttcctaaatcacc 39037
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 19915603 ccgacgccgtcggggagctc 19915622
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 3612645 ccgacgccgtcggggagctc 3612626
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ggccgccggaggtggtgcgg 249 |||||||||||||||||||| Sbjct: 3518631 ggccgccggaggtggtgcgg 3518612
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 17053984 ccgacgccgtcggggagctc 17053965
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ccggcgcggtcaccaggccc 288 |||||||||||||||||||| Sbjct: 2770853 ccggcgcggtcaccaggccc 2770872
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 6.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 80 gcgccacctctctccgcgccgccggggaggcc 111 |||||||||| |||| |||||||||||||||| Sbjct: 10012 gcgccacctc-ctccacgccgccggggaggcc 9982
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ggccgccggaggtggtgcgg 249 |||||||||||||||||||| Sbjct: 56581 ggccgccggaggtggtgcgg 56562
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 cgccgggagccacgcggccggcgc 275 ||||||||||||||||| |||||| Sbjct: 2628035 cgccgggagccacgcggtcggcgc 2628058
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgacgccgtcggggagctc 132 |||||||||||||||||||| Sbjct: 3612566 ccgacgccgtcggggagctc 3612547
>gb|AC152167.3| Mus musculus BAC clone RP23-330B16 from 7, complete sequence Length = 215518 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 gcttgcctaaggaatgttttcatg 337 |||||||||| ||||||||||||| Sbjct: 81119 gcttgcctaaagaatgttttcatg 81096
>dbj|AP001266.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-770G2, complete sequence Length = 175872 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cgggagccacgcggccggcgcggt 278 |||||||| ||||||||||||||| Sbjct: 117751 cgggagccgcgcggccggcgcggt 117728 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,994,310 Number of Sequences: 3902068 Number of extensions: 2994310 Number of successful extensions: 58823 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 58216 Number of HSP's gapped (non-prelim): 596 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)