>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA|
           cleavage complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 33/87 (37%), Positives = 47/87 (54%)
 Frame = +3

Query: 195 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 374
           Y+ +L +LTFN KP I  LTI+A ++                 + P  +KLP +YL+DSI
Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179

Query: 375 VKNIGREYVADFATRLQKVFCFAYREV 455
           VKN+GREY+  F   L   F   + +V
Sbjct: 180 VKNVGREYLTAFTKNLVATFICVFEKV 206

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 37/87 (42%), Positives = 41/87 (47%)
 Frame = +3

Query: 195 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 374
           Y  AL +LTFN KPII  LT IA Q                  + P   KLP+LYLLDSI
Sbjct: 8   YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66

Query: 375 VKNIGREYVADFATRLQKVFCFAYREV 455
            KN+G  Y   F   L   F  AY  V
Sbjct: 67  SKNLGAPYTYFFGLHLFSTFMSAYTVV 93

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 43/88 (48%)
 Frame = +3

Query: 183 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 362
           +V  +   L ELTFN +PIIT LT +A ++                  +P +QKL + Y 
Sbjct: 8   IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66

Query: 363 LDSIVKNIGREYVADFATRLQKVFCFAY 446
           LDSI KN+G  Y   F+  L  ++   Y
Sbjct: 67  LDSICKNVGSPYTIYFSRNLFNLYKRTY 94

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +3

Query: 195 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 374
           Y+E LAEL  N K  I  LTI+A                      P  QKL  +Y+ DSI
Sbjct: 11  YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69

Query: 375 VKNIGR--EYVADFATRLQKVFCFAYRE 452
           +KN+ +  +Y A FA ++  +F  A+R+
Sbjct: 70  LKNVKKPNDYDALFARKIVSMFEHAFRQ 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,882,323
Number of Sequences: 219361
Number of extensions: 578706
Number of successful extensions: 1730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)