ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 100 6e-18
2dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic D... 100 6e-18
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 5e-09
4gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genom... 70 5e-09
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
6emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster 44 0.30
7emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chr... 44 0.30
8ref|XM_464330.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
9gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.2
10gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
11gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
12ref|XM_814435.1| Trypanosoma cruzi strain CL Brener T-lymphocyte... 42 1.2
13emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chr... 42 1.2
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16ref|XM_573708.1| PREDICTED: Rattus norvegicus similar to Ubiquit... 42 1.2
17dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.2
18dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.2
20ref|NM_197848.1| Oryza sativa (japonica cultivar-group) putative... 40 4.7
21gb|AC113271.10| Mus musculus chromosome 5, clone RP23-376H8, com... 40 4.7
22gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
23ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
24ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
25ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
26ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
27ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
28ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
29ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin ... 40 4.7
30gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, com... 40 4.7
31gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 4.7
32ref|XM_968983.1| PREDICTED: Tribolium castaneum similar to CG617... 40 4.7
33emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.7
34emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 4.7
35emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 4.7
36emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 4.7
37gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Ca... 40 4.7
38ref|NM_001026142.2| Caenorhabditis elegans C08F8.9 (C08F8.9) mRN... 40 4.7
39gb|AC022211.5|AC022211 Homo sapiens BAC clone RP11-649A18 from 1... 40 4.7
40emb|AL512362.4|CNS07EFB Human chromosome 14 DNA sequence BAC R-7... 40 4.7
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
42gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003... 40 4.7
43emb|BX927359.1| Human chromosome 14 DNA sequence BAC R-614O9 of ... 40 4.7
44emb|Y19223.3|TAQ19223 Thermus aquaticus rpoB gene for RNA polyme... 40 4.7
45dbj|AK108363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
46emb|Z73103.1|CEC08F8 Caenorhabditis elegans Cosmid C08F8, comple... 40 4.7
47gb|BC099169.1| Rattus norvegicus ubiquitin-conjugating enzyme E2... 40 4.7
48gb|BC079134.1| Rattus norvegicus ubiquitin-conjugating enzyme E2... 40 4.7
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                            
Query: 229      cgccggtgtccgaggcggcggcgaggcgcctgcgggaggcggaggagcggttgcgcgagg 288
                |||||| ||| |||||||||||| || | ||||||||||||||||||||| |||| ||||
Sbjct: 18453364 cgccggcgtcggaggcggcggcgcggaggctgcgggaggcggaggagcggctgcgggagg 18453305

                                  
Query: 289      ccatccaggagctccacc 306
                ||||||||||||||||||
Sbjct: 18453304 ccatccaggagctccacc 18453287



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 112      ccatgcccttcctctcgacgccctcgttcgacctctccgccggcgcggaacccac 166
                ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 18453484 ccatgccgttcctctcgacgccgtcgttcgacctctccgccggcgccgagcccac 18453430
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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                         
Query: 229   cgccggtgtccgaggcggcggcgaggcgcctgcgggaggcggaggagcggttgcgcgagg 288
             |||||| ||| |||||||||||| || | ||||||||||||||||||||| |||| ||||
Sbjct: 45212 cgccggcgtcggaggcggcggcgcggaggctgcgggaggcggaggagcggctgcgggagg 45153

                               
Query: 289   ccatccaggagctccacc 306
             ||||||||||||||||||
Sbjct: 45152 ccatccaggagctccacc 45135



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 112   ccatgcccttcctctcgacgccctcgttcgacctctccgccggcgcggaacccac 166
             ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 45332 ccatgccgttcctctcgacgccgtcgttcgacctctccgccggcgccgagcccac 45278
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 112      ccatgcccttcctctcgacgccctcgttcgacctctccgccggcgcggaacccac 166
                ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct: 23515167 ccatgccattcctctcgacgccgtcgttcgacctctctgccggcgccgagcccac 23515113



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 256      gcctgcgggaggcggaggagcggttgcgcgaggccatccaggagctcca 304
                ||||| |||||||||||||||| ||||| ||| | ||||  ||||||||
Sbjct: 23515009 gcctgtgggaggcggaggagcgattgcgggagactatccgagagctcca 23514961
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>gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete
             sequence
          Length = 144383

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 112   ccatgcccttcctctcgacgccctcgttcgacctctccgccggcgcggaacccac 166
             ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct: 67090 ccatgccattcctctcgacgccgtcgttcgacctctctgccggcgccgagcccac 67144



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 256   gcctgcgggaggcggaggagcggttgcgcgaggccatccaggagctcca 304
             ||||| |||||||||||||||| ||||| ||| | ||||  ||||||||
Sbjct: 67248 gcctgtgggaggcggaggagcgattgcgggagactatccgagagctcca 67296
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 112      ccatgcccttcctctcgacgccctcgttcgacctctccgccggcgcggaacccac 166
                ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct: 23508195 ccatgccattcctctcgacgccgtcgttcgacctctctgccggcgccgagcccac 23508141



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 256      gcctgcgggaggcggaggagcggttgcgcgaggccatccaggagctcca 304
                ||||| |||||||||||||||| ||||| ||| | ||||  ||||||||
Sbjct: 23508037 gcctgtgggaggcggaggagcgattgcgggagactatccgagagctcca 23507989
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>emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster
          Length = 64650

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 139   tcgacctctccgccggcgcggaaccc 164
             |||||||| |||||||||||||||||
Sbjct: 17957 tcgacctcgccgccggcgcggaaccc 17982
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>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete
              sequence
          Length = 132296

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 60     ccccagaagccaagccaaggaa 81
              ||||||||||||||||||||||
Sbjct: 128036 ccccagaagccaagccaaggaa 128057
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>ref|XM_464330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 261

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 258 ctgcgggaggcggaggagcgg 278
           |||||||||||||||||||||
Sbjct: 87  ctgcgggaggcggaggagcgg 107
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 37      agcagcggaatcaggctgacg 57
               |||||||||||||||||||||
Sbjct: 2234604 agcagcggaatcaggctgacg 2234584
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>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08,
             complete sequence
          Length = 132017

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 265   aggcggaggagcggttgcgcgaggccatccaggagct 301
             ||||||||||||||  ||  |||||||||||||||||
Sbjct: 51599 aggcggaggagcggccgccagaggccatccaggagct 51563
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>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0084P24, complete sequence
          Length = 148784

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 265  aggcggaggagcggttgcgcgaggccatccaggagct 301
            ||||||||||||||  ||  |||||||||||||||||
Sbjct: 1210 aggcggaggagcggccgccagaggccatccaggagct 1174
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>ref|XM_814435.1| Trypanosoma cruzi strain CL Brener T-lymphocyte triggering factor
           (Tc00.1047053507641.210) partial mRNA
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 258 ctgcgggaggcggaggagcgg 278
           |||||||||||||||||||||
Sbjct: 352 ctgcgggaggcggaggagcgg 372
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>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three
              novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a
              transcription elongation factor A (SII) 3 (Tcea3)
              pseudogene and the 3' end of the Fbxw1b gene for F-box and
              WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     ccccagaagccaagccaagga 80
              |||||||||||||||||||||
Sbjct: 119764 ccccagaagccaagccaagga 119744
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 265      aggcggaggagcggttgcgcgaggccatccaggagct 301
                ||||||||||||||  ||  |||||||||||||||||
Sbjct: 20162938 aggcggaggagcggccgccagaggccatccaggagct 20162902



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 242     ggcggcggcgaggcgcctgc 261
               ||||||||||||||||||||
Sbjct: 1852100 ggcggcggcgaggcgcctgc 1852081
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 258     ctgcgggaggcggaggagcgg 278
               |||||||||||||||||||||
Sbjct: 4531774 ctgcgggaggcggaggagcgg 4531754
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>ref|XM_573708.1| PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating
           enzyme E2 E1 (Ubiquitin-protein ligase E1) (Ubiquitin
           carrier protein E1) (UbcM3) (LOC498449), mRNA
          Length = 2586

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 14  ccccagcgagagcgagacacg 34
           |||||||||||||||||||||
Sbjct: 371 ccccagcgagagcgagacacg 391
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 244    cggcggcgaggcgcctgcgggaggcggag 272
              ||||||||||| ||||| |||||||||||
Sbjct: 684917 cggcggcgaggagcctgggggaggcggag 684889
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1297_C09
          Length = 163378

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   ctgcgggaggcggaggagcgg 278
             |||||||||||||||||||||
Sbjct: 67153 ctgcgggaggcggaggagcgg 67133
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 244    cggcggcgaggcgcctgcgggaggcggag 272
              ||||||||||| ||||| |||||||||||
Sbjct: 355550 cggcggcgaggagcctgggggaggcggag 355522
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>ref|NM_197848.1| Oryza sativa (japonica cultivar-group) putative AT-Hook DNA-binding
           protein (OSJNBa0003O19.1), mRNA
          Length = 1602

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 240 gaggcggcggcgaggcgcctgcgggaggcggaggag 275
           |||||||||||| |||||| || |||||||||||||
Sbjct: 811 gaggcggcggcgcggcgcc-gccggaggcggaggag 777
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>gb|AC113271.10| Mus musculus chromosome 5, clone RP23-376H8, complete sequence
          Length = 185353

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     cccagcgagagcgagacacg 34
              ||||||||||||||||||||
Sbjct: 129375 cccagcgagagcgagacacg 129356
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>gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077L08, complete sequence
          Length = 115640

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   ggcggcggcgaggcgcctgc 261
             ||||||||||||||||||||
Sbjct: 30874 ggcggcggcgaggcgcctgc 30855
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>ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 1 (LOC482083), mRNA
          Length = 15160

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 5051 ccgaggaggcggagcggcgcctgcggcaggcggagg 5086
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>ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 8 (LOC482083), mRNA
          Length = 14734

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 4625 ccgaggaggcggagcggcgcctgcggcaggcggagg 4660
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>ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 7 (LOC482083), mRNA
          Length = 14734

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 4625 ccgaggaggcggagcggcgcctgcggcaggcggagg 4660
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>ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 6 (LOC482083), mRNA
          Length = 15175

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 5066 ccgaggaggcggagcggcgcctgcggcaggcggagg 5101
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>ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 5 (LOC482083), mRNA
          Length = 14749

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 4640 ccgaggaggcggagcggcgcctgcggcaggcggagg 4675
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>ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 4 (LOC482083), mRNA
          Length = 14863

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 4754 ccgaggaggcggagcggcgcctgcggcaggcggagg 4789
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>ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 2 (LOC482083), mRNA
          Length = 14812

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 238  ccgaggcggcggcgaggcgcctgcgggaggcggagg 273
            |||||| ||||| | ||||||||||| |||||||||
Sbjct: 4703 ccgaggaggcggagcggcgcctgcggcaggcggagg 4738
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>gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, complete sequence
          Length = 216490

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     cccagcgagagcgagacacg 34
              ||||||||||||||||||||
Sbjct: 203012 cccagcgagagcgagacacg 203031
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 222     ccgcagccgccggtgtccgaggcg 245
               ||||||||||||| ||||||||||
Sbjct: 3766452 ccgcagccgccggcgtccgaggcg 3766429
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>ref|XM_968983.1| PREDICTED: Tribolium castaneum similar to CG6178-PA (LOC662911), mRNA
          Length = 1575

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  cgggatgaggaggccaccaa 337
            ||||||||||||||||||||
Sbjct: 1141 cgggatgaggaggccaccaa 1160
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 284   cgaggccatccaggagctccaccagcac 311
             ||||||||||||||||| | ||||||||
Sbjct: 18134 cgaggccatccaggagcgctaccagcac 18161
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>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 284    cgaggccatccaggagctccaccagcac 311
              ||||||||||||||||| | ||||||||
Sbjct: 313068 cgaggccatccaggagcgctaccagcac 313095
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 284    cgaggccatccaggagctccaccagcac 311
              ||||||||||||||||| | ||||||||
Sbjct: 247919 cgaggccatccaggagcgctaccagcac 247946
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     acgcaccccctggagcccgg 101
              ||||||||||||||||||||
Sbjct: 272369 acgcaccccctggagcccgg 272350
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>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193626

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     caaccccagcgagagcgaga 30
              ||||||||||||||||||||
Sbjct: 102845 caaccccagcgagagcgaga 102826
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>ref|NM_001026142.2| Caenorhabditis elegans C08F8.9 (C08F8.9) mRNA, complete cds
          Length = 265

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 aggagctccaccagcaccac 314
           ||||||||||||||||||||
Sbjct: 21  aggagctccaccagcaccac 40
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>gb|AC022211.5|AC022211 Homo sapiens BAC clone RP11-649A18 from 17, complete sequence
          Length = 191155

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   gcggttgcgcgaggccatcc 294
             ||||||||||||||||||||
Sbjct: 21521 gcggttgcgcgaggccatcc 21540
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>emb|AL512362.4|CNS07EFB Human chromosome 14 DNA sequence BAC R-716K17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168744

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   ccaggagctccaccagcacc 312
             ||||||||||||||||||||
Sbjct: 66806 ccaggagctccaccagcacc 66825
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 240      gaggcggcggcgaggcgcctgcgggaggcggaggag 275
                |||||||||||| |||||| || |||||||||||||
Sbjct: 22224830 gaggcggcggcgcggcgcc-gccggaggcggaggag 22224864
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>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete
             sequence
          Length = 172427

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 240   gaggcggcggcgaggcgcctgcgggaggcggaggag 275
             |||||||||||| |||||| || |||||||||||||
Sbjct: 42073 gaggcggcggcgcggcgcc-gccggaggcggaggag 42107
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>emb|BX927359.1| Human chromosome 14 DNA sequence BAC R-614O9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173641

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    ccaggagctccaccagcacc 312
              ||||||||||||||||||||
Sbjct: 113504 ccaggagctccaccagcacc 113485
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>emb|Y19223.3|TAQ19223 Thermus aquaticus rpoB gene for RNA polymerase beta subunit and rpoC
            gene for RNA polymerase beta' subunit
          Length = 7954

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  cgaggccatccaggagctcc 303
            ||||||||||||||||||||
Sbjct: 4753 cgaggccatccaggagctcc 4772
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>dbj|AK108363.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C12, full
           insert sequence
          Length = 1043

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 240 gaggcggcggcgaggcgcctgcgggaggcggaggag 275
           |||||||||||| |||||| || |||||||||||||
Sbjct: 258 gaggcggcggcgcggcgcc-gccggaggcggaggag 224
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>emb|Z73103.1|CEC08F8 Caenorhabditis elegans Cosmid C08F8, complete sequence
          Length = 32677

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   aggagctccaccagcaccac 314
             ||||||||||||||||||||
Sbjct: 29996 aggagctccaccagcaccac 29977
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>gb|BC099169.1| Rattus norvegicus ubiquitin-conjugating enzyme E2E 2 (UBC4/5
          homolog, yeast), mRNA (cDNA clone IMAGE:7382303),
          partial cds
          Length = 1403

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 15 cccagcgagagcgagacacg 34
          ||||||||||||||||||||
Sbjct: 3  cccagcgagagcgagacacg 22
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>gb|BC079134.1| Rattus norvegicus ubiquitin-conjugating enzyme E2E 2 (UBC4/5
          homolog, yeast), mRNA (cDNA clone IMAGE:7127579),
          partial cds
          Length = 1426

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 15 cccagcgagagcgagacacg 34
          ||||||||||||||||||||
Sbjct: 29 cccagcgagagcgagacacg 48
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 240      gaggcggcggcgaggcgcctgcgggaggcggaggag 275
                |||||||||||| |||||| || |||||||||||||
Sbjct: 22236898 gaggcggcggcgcggcgcc-gccggaggcggaggag 22236932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,626,719
Number of Sequences: 3902068
Number of extensions: 2626719
Number of successful extensions: 60549
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 59800
Number of HSP's gapped (non-prelim): 764
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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