ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31d08 |
|---|---|
| Clone Library Name | barley_pub |
>FGF23_RAT (Q8VI82) Fibroblast growth factor 23 precursor (FGF-23)| Length = 251 Score = 34.3 bits (77), Expect = 0.14 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = -3 Query: 267 RPSSQPCSRKNHRLLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAG-LRRG 91 R + P R +L+ RP A P S C P E GG A S+ G LRRG Sbjct: 179 RSAEDPPERDPLNVLKPRPRATPIPVS------CSRELPSAEE--GGPAASDPLGVLRRG 230 Query: 90 GDEARRGCG 64 +ARRG G Sbjct: 231 RGDARRGAG 239
>L100_ADE40 (P11823) Late 100 kDa protein| Length = 770 Score = 33.1 bits (74), Expect = 0.31 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Frame = -3 Query: 219 HRPSANPSATSDNLIHGCR-SRRPGQE--RSCGGGAGSELAGLRRGGDEARRGCG---RE 58 HR +A P+ T+ + G R+PG+ R GGGA EL RRGG R G R+ Sbjct: 681 HRATAIPAETTKAVGRGGDVGRQPGRGSFRRGGGGADGELGQPRRGGPRGRGGRNHRQRQ 740 Query: 57 GNMF 46 G +F Sbjct: 741 GTIF 744
>RM62_DROME (P19109) ATP-dependent RNA helicase p62 (EC 3.6.1.-)| Length = 719 Score = 32.7 bits (73), Expect = 0.41 Identities = 21/50 (42%), Positives = 23/50 (46%) Frame = -3 Query: 150 GQERSCGGGAGSELAGLRRGGDEARRGCGREGNMFGLGNCDL*QRRDGTG 1 G R GGG G + G+R G E RR GN FG G RR G G Sbjct: 175 GGNRFGGGGGGGDYHGIRNGRVEKRRDDRGGGNRFG-GGGGFGDRRGGGG 223
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 32.3 bits (72), Expect = 0.53 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = -3 Query: 270 RRPSSQPCSRKNHRLLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAGLRRG 91 RRPS P +R +R R RP+A + G ++ + G+E GGG+ G G Sbjct: 162 RRPSPPPSTRPTYR--RRRPTAATPSRKKKARRGPKASKAGREGELGGGSPVAHRGTSLG 219 Query: 90 ---GDEARRG 70 D A RG Sbjct: 220 TGVRDPAPRG 229
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 32.0 bits (71), Expect = 0.70 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -3 Query: 249 CSRKNHRLLRHRPSANPSATSDNLIHGCRSRRPGQ-ERSCGGGAGSELAGLRRGGDEARR 73 C H + R PSA + + D + C +PG R C GS G R GGD Sbjct: 201 CGESGH-MSRECPSAGSTGSGDRACYKCG--KPGHISRECPEAGGS-YGGSRGGGDRTCY 256 Query: 72 GCGREGNM 49 CG G++ Sbjct: 257 KCGEAGHI 264
>FGF23_MOUSE (Q9EPC2) Fibroblast growth factor 23 precursor (FGF-23)| Length = 251 Score = 31.6 bits (70), Expect = 0.91 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = -3 Query: 267 RPSSQPCSRKNHRLLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAG-LRRG 91 R + P R +L+ RP A P S C P E GG A S+ G LRRG Sbjct: 179 RSAEDPPERDPLNVLKPRPRATPVPVS------CSRELPSAEE--GGPAASDPLGVLRRG 230 Query: 90 GDEARRGCG 64 +AR G G Sbjct: 231 RGDARGGAG 239
>FRMD6_MOUSE (Q8C0V9) FERM domain-containing protein 6| Length = 622 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -3 Query: 270 RRPSSQPCSRKNHRLLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGA 121 R S S K+ RL RH +++ S+ + + + R PG E SC G A Sbjct: 367 RASGSSAGSVKHKRLSRHSTASHSSSHTSGIEADTKPRDPGPEDSCSGSA 416
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = -3 Query: 153 PGQERSCGGGAGSELAGLRRGGDEARRGCGREGNMFGLGN 34 P Q GGG G G R GG+ G G GN G GN Sbjct: 199 PKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGN 238
>FOXD3_MOUSE (Q61060) Forkhead box protein D3 (HNF3/FH transcription factor| genesis) (Hepatocyte nuclear factor 3 forkhead homolog 2) (HFH-2) Length = 465 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -3 Query: 228 LLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAGLRRGG 88 L++ PSA PS + +N+I G S PG GG G G GG Sbjct: 351 LIKSEPSARPSFSIENII-GAGSAAPGGSAGGGGSGGGAGGGGGSGG 396
>GAS1_HUMAN (P54826) Growth-arrest-specific protein 1 precursor (GAS-1)| Length = 345 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = -3 Query: 195 ATSDNLIHGCRSRRPGQERSCGGGAGSELAGLRRGGDEARRGCGRE 58 A +N R+ P R+ GGGAG AG G EARR C R+ Sbjct: 131 AQDENCKSTKRAIEPCLPRTSGGGAGGPGAGGVMGCTEARRRCDRD 176
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -3 Query: 237 NHRLLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAGLRRGGDEARRGCG 64 N ++++ PS NP+A +L G RSR+ Q+ G+ + + G E+ G G Sbjct: 139 NTFIVKNPPSLNPAAQGSSLTEGKRSRKQKQKNDNADGSMTNNSLANNSGGESDGGNG 196
>LBR_DROME (Q8MLV1) Lamin-B receptor (dLBR)| Length = 741 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 223 QQPMILPRARLG*GTTIAACPASPCRSGGPATRARAEALRH 345 +QP +LP R T A A+ + GPATR RA R+ Sbjct: 49 KQPSLLPVTRRTGSVTAAGATATATATAGPATRTRASPSRN 89
>GGA2_HUMAN (Q9UJY4) ADP-ribosylation factor-binding protein GGA2| (Golgi-localized, gamma ear-containing, ARF-binding protein 2) (Gamma-adaptin-related protein 2) (VHS domain and ear domain of gamma-adaptin) (Vear) Length = 613 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = +1 Query: 1 PRPVSSLL-QIAIPQSKHIPLPPAASPRLVAAAP 99 P+PV ++ Q+A+P+S + L PA+S +L A +P Sbjct: 526 PQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSP 559
>TWST1_PONPY (Q8MIB9) Twist-related protein 1| Length = 203 Score = 27.7 bits (60), Expect(2) = 1.8 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -3 Query: 171 GCRSRRPGQERSCGGGA--GSELAGLRRGGDE 82 G R RR RS GGGA G +G GGDE Sbjct: 35 GGRKRRSSSRRSAGGGAGPGGAASGGVGGGDE 66 Score = 21.6 bits (44), Expect(2) = 1.8 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = -2 Query: 346 DVEGLPLSPWSQDRHSDKDSPDRLRSSS 263 DV P+SP + ++ PDR + S Sbjct: 4 DVSSSPVSPADDSLSNSEEEPDRQQPPS 31
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +1 Query: 1 PRPVSSLLQIAIPQSKHIPLPPAASPRLVAAAPQPS 108 P+PV +L+ + S+ PLPP A R+ A+P+P+ Sbjct: 630 PKPVPTLV---VRPSRPAPLPPPAQQRMNTASPKPT 662
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = -3 Query: 135 CGGGAGSELAGLRRGGDEARRGCGREGNMFGLGNC 31 C GG GS GL G GCG G+ G G C Sbjct: 6 CSGGCGSGCGGLGSGCGGCGSGCGGRGS--GCGGC 38
>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog| Length = 249 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = -3 Query: 180 LIHGCRSRRPGQERSCGGGAGSELAGLRRGGDEARRGCGREG 55 L+ G S R GQ GG A + GLRRGG R G GR G Sbjct: 127 LLRGGMSLR-GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGG 167
>CA077_RAT (Q498T2) Protein C1orf77 homolog| Length = 248 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = -3 Query: 180 LIHGCRSRRPGQERSCGGGAGSELAGLRRGGDEARRGCGREG 55 L+ G S R GQ GG A + GLRRGG R G GR G Sbjct: 126 LLRGGMSLR-GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGG 166
>CA077_HUMAN (Q9Y3Y2) Protein C1orf77| Length = 248 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = -3 Query: 180 LIHGCRSRRPGQERSCGGGAGSELAGLRRGGDEARRGCGREG 55 L+ G S R GQ GG A + GLRRGG R G GR G Sbjct: 126 LLRGGMSLR-GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGG 166
>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog| Length = 248 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = -3 Query: 180 LIHGCRSRRPGQERSCGGGAGSELAGLRRGGDEARRGCGREG 55 L+ G S R GQ GG A + GLRRGG R G GR G Sbjct: 126 LLRGGMSLR-GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGG 166
>K2CA_BOVIN (P04263) Keratin, type II cytoskeletal 68 kDa, component IA| (Fragment) Length = 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Frame = -3 Query: 198 SATSDNLIHGCRSRRPGQERSCGGGAGSELAGLRRGG------DEARRGCGREGNMFGLG 37 S+ S ++H S G + GGGAG GL GG R G G G+ G Sbjct: 72 SSVSIEMVHNTTSSSSGGSGALGGGAGGR-GGLGSGGLGSGSLGSGRLGSGGRGSRASRG 130 Query: 36 NCDL 25 N L Sbjct: 131 NLAL 134
>LCE1E_HUMAN (Q5T753) Late cornified envelope protein 1E (Late envelope protein| 5) Length = 118 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 240 KNHRLLRHRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAG 103 ++HR RHRP ++ C S+ G CGGG+G G Sbjct: 81 RHHRSHRHRPQSSD----------CCSQPSGGSSCCGGGSGQHSGG 116
>TRMB_PROAC (Q6A6S9) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 314 Score = 29.3 bits (64), Expect = 4.5 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = -3 Query: 273 DRRPSSQPCSRKNHRLLR-HRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSEL-AGL 100 DRR + NHR+ + HR S +P D P Q R G G E+ AG Sbjct: 13 DRRSITSAGEHFNHRVAQSHRLSFDP-VRPDPAPLDPTDASPAQARRHQPGLGVEVSAGA 71 Query: 99 RRGGDEARRG 70 R GD RRG Sbjct: 72 HRSGDRVRRG 81
>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1161 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = -3 Query: 162 SRRPGQERSCGGGAGSELAGLRRGGDEARRGCGREGNMFGL 40 SR P E GGGA AG GG A GCG G+ G+ Sbjct: 5 SRMPKSEGGSGGGA----AGGGAGGAGAGAGCGSGGSSVGV 41
>HN1_BOVIN (Q3T0T5) Hematological and neurological expressed 1 protein| Length = 154 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 10 VSSLLQIAIPQSKHIPLPPAASPRLVAAAPQPSQ 111 V + LQ ++ QS+ P+P A P VA AP PS+ Sbjct: 108 VDTDLQASLGQSEEKPVPAAPVPSPVAPAPVPSR 141
>MUTS_THET8 (Q56239) DNA mismatch repair protein mutS| Length = 818 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 140 RSCPGRRLRQPWIRLSEVAEGFADGRCLSNR*FFREHGWDEGRR 271 R+ PGRRL Q W+R + G + R F RE EG R Sbjct: 287 RTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVR 330
>MUTS_THECA (Q9ZIX6) DNA mismatch repair protein mutS| Length = 817 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 140 RSCPGRRLRQPWIRLSEVAEGFADGRCLSNR*FFREHGWDEGRR 271 R+ PGRRL Q W+R + G + R F RE EG R Sbjct: 285 RTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVR 328
>MUTS_THET2 (P61671) DNA mismatch repair protein mutS| Length = 811 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 140 RSCPGRRLRQPWIRLSEVAEGFADGRCLSNR*FFREHGWDEGRR 271 R+ PGRRL Q W+R + G + R F RE EG R Sbjct: 280 RTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVR 323
>IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Protein UL69)| Length = 841 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +1 Query: 271 IAACPASPCRSGGPATRARA--EALRHP 348 IA PASPCR GG + A A + LR P Sbjct: 318 IANKPASPCRKGGSSAAAAASFDVLRRP 345
>LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late envelope protein| 3) Length = 118 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Frame = -3 Query: 249 CSRKNHRLLR---HRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAG 103 C +HR R HRP ++ GC S+ G CGGG+G G Sbjct: 75 CCLSHHRRRRSHCHRPQSS----------GCCSQPSGGSSCCGGGSGQHSGG 116
>LCE1B_HUMAN (Q5T7P3) Late cornified envelope protein 1B (Late envelope protein| 2) (Small proline-rich-like epidermal differentiation complex protein 2A) Length = 118 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Frame = -3 Query: 249 CSRKNHRLLR---HRPSANPSATSDNLIHGCRSRRPGQERSCGGGAGSELAG 103 C +HR R HRP ++ GC S+ G CGGG+G G Sbjct: 75 CCLSHHRRRRSHCHRPQSS----------GCCSQPSGGSSCCGGGSGQHSGG 116
>GGA2_MOUSE (Q6P5E6) ADP-ribosylation factor-binding protein GGA2| (Golgi-localized, gamma ear-containing, ARF-binding protein 2) (Gamma-adaptin-related protein 2) Length = 603 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +1 Query: 19 LLQIAIPQSKHIPLPPAASPRLVAAAP 99 + Q+A+P+S + L PA+S +L A +P Sbjct: 523 MFQVAVPKSMRVKLQPASSSKLPAFSP 549
>MUTS_THEAQ (Q56215) DNA mismatch repair protein mutS| Length = 811 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 140 RSCPGRRLRQPWIRLSEVAEGFADGRCLSNR*FFREHGWDEGRR 271 R+ PGRRL Q W+R + G + R F RE EG R Sbjct: 280 RTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVR 323 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,505,618 Number of Sequences: 219361 Number of extensions: 992950 Number of successful extensions: 3997 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3978 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
