Clone Name	bastl31d06
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	597	e-167
2	dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic D...	597	e-167
3	ref|XM_493925.1| Oryza sativa (japonica cultivar-group), predic...	573	e-160
4	gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome...	573	e-160
5	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	573	e-160
6	gb|AF519538.1| Zea mays RNA polymerase II largest subunit (RPB1)...	470	e-129
7	gb|AF519541.1| Amborella trichopoda RNA polymerase II largest su...	192	7e-46
8	gb|AF519539.1| Magnolia x soulangeana RNA polymerase II largest ...	186	4e-44
9	emb|X52495.1|GMRPB1C Soybean RPB1-C gene for largest subunit of ...	145	1e-31
10	gb|AY490553.1| Ginkgo biloba RNA polymerase II large subunit (rp...	145	1e-31
11	gb|AF519536.1| Pinus nigra RNA polymerase II largest subunit (RP...	129	9e-27
12	gb|DQ020635.1| Rhododendron macrophyllum RNA polymerase II large...	125	1e-25
13	dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
14	gb|AF519540.1| Nymphaea odorata RNA polymerase II largest subuni...	121	2e-24
15	gb|AY490550.1| Thuja occidentalis RNA polymerase II large subuni...	121	2e-24
16	gb|AF519535.1| Cycas revoluta RNA polymerase II largest subunit ...	113	5e-22
17	emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6...	111	2e-21
18	ref|NM_119746.2| Arabidopsis thaliana NRPB1 (RNA POLYMERASE II L...	103	5e-19
19	emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, ...	103	5e-19
20	emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BA...	103	5e-19
21	emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polym...	101	2e-18
22	gb|AF519534.1| Zamia muricata RNA polymerase II largest subunit ...	98	3e-17
23	emb|X52494.1|ATRPB1 Arabidopsis thaliana RPB1 gene for the large...	96	1e-16
24	gb|DQ020643.1| Antirrhinum majus RNA polymerase II largest subun...	94	5e-16
25	dbj|D87294.1| Cricetulus griseus mRNA for RNA polymerase II larg...	86	1e-13
26	dbj|D87293.1| Cricetulus griseus mRNA for RNA polymerase II larg...	86	1e-13
27	dbj|AB052229.1| Cricetulus griseus rpb1 mRNA for RNA polymerase ...	86	1e-13
28	gb|AF241046.1|AF241045S2 Stenochrus portoricensis RNA polymerase...	74	4e-10
29	gb|AF519537.1| Welwitschia mirabilis RNA polymerase II largest s...	72	2e-09
30	emb|X56564.1|SPRPB1 S. pombe rpb1 gene for the largest subunit o...	72	2e-09
31	emb|AL121795.1|SPBC28F2 S.pombe chromosome II cosmid c28F2	72	2e-09
32	ref|NM_001021568.1| Schizosaccharomyces pombe 972h- DNA-directed...	72	2e-09
33	gb|AY490551.1| Taxus canadensis RNA polymerase II large subunit ...	72	2e-09
34	ref|NM_009089.1| Mus musculus polymerase (RNA) II (DNA directed)...	70	7e-09
35	emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chr...	70	7e-09
36	gb|AF139014.1| Tanystylum orbiculare RNA polymerase II largest s...	70	7e-09
37	gb|U37500.1|MMU37500 Mus musculus RNA polymerase II largest subu...	70	7e-09
38	gb|M12130.1|MUSRPOII2 Mouse locus RPII215 polymerase II large su...	70	7e-09
39	gb|DQ020644.1| Lycopersicon esculentum RNA polymerase II largest...	66	1e-07
40	gb|AF519542.1| Psilotum nudum RNA polymerase II largest subunit ...	66	1e-07
41	ref|XM_501909.1| Yarrowia lipolytica CLIB122, YALI0C16566g predi...	66	1e-07
42	gb|U90210.1|SSU90210 Spirogyra sp. RNA polymerase II largest sub...	66	1e-07
43	emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1...	66	1e-07
44	gb|AY602185.1| Caenorhabditis japonica RNA polymerase 2 gene, pa...	64	4e-07
45	emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segme...	64	4e-07
46	ref|XM_636643.1| Dictyostelium discoideum RNA polymerase II core...	62	2e-06
47	ref|XM_511300.1| PREDICTED: Pan troglodytes similar to DNA-direc...	62	2e-06
48	ref|XM_853587.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
49	ref|XM_853549.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
50	ref|XM_853506.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
51	ref|XM_853460.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
52	ref|XM_853428.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
53	ref|XM_853391.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
54	ref|XM_853358.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
55	ref|XM_853318.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
56	ref|XM_853280.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
57	ref|XM_853239.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
58	ref|XM_853200.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
59	ref|XM_853162.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
60	ref|XM_853117.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
61	ref|XM_853080.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
62	ref|XM_853039.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
63	ref|XM_536621.2| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
64	ref|XM_852955.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
65	ref|XM_852914.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
66	ref|XM_852871.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
67	ref|XM_852828.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
68	ref|XM_852751.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
69	ref|XM_843971.1| PREDICTED: Canis familiaris similar to DNA-dire...	62	2e-06
70	gb|AC113189.11| Homo sapiens chromosome 17, clone RP11-104H15, c...	62	2e-06
71	emb|X63564.1|HSRPIILS H.sapiens mRNA for RNA polymerase II large...	62	2e-06
72	gb|S52651.1| RNA polymerase II largest subunit [Dictyostelium di...	62	2e-06
73	ref|NM_000937.2| Homo sapiens polymerase (RNA) II (DNA directed)...	62	2e-06
74	emb|X74871.1|HSRPII04 H.sapiens gene for RNA pol II largest subu...	62	2e-06
75	gb|AY601778.1|AY601778S1 Oscheius myriophila strain DF5020 RNA p...	60	7e-06
76	gb|AY602183.1| Rhabditella axei RNA polymerase 2 gene, partial cds	60	7e-06
77	gb|AY604469.1| Prodontorhabditis wirthi strain DF5074 RNA polyme...	60	7e-06
78	gb|AE010257.1| Pyrococcus furiosus DSM 3638, section 132 of 173 ...	60	7e-06
79	gb|AF241041.1|AF241040S2 Solifugid 'Sol' RNA polymerase II large...	60	7e-06
80	gb|U73456.1|TPU73456 Teratorhabditis palmarum large subunit RNA ...	60	7e-06
81	ref|XM_456921.1| Debaryomyces hansenii CBS767 hypothetical prote...	58	3e-05
82	ref|XM_381092.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	58	3e-05
83	emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS...	58	3e-05
84	dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003	58	3e-05
85	gb|AF315819.1|AF315819 Botryocladia uvarioides DNA-dependent RNA...	58	3e-05
86	dbj|AB017184.1| Aspergillus oryzae gene for RNA polymerase II la...	58	3e-05
87	gb|AY602186.1| Caenorhabditis plicata RNA polymerase 2 gene, par...	56	1e-04
88	ref|XM_749096.1| Aspergillus fumigatus Af293 DNA-directed RNA po...	56	1e-04
89	emb|AL035570.1|SPBC651 S.pombe chromosome II cosmid c651	56	1e-04
90	emb|AJ719836.1| Gallus gallus mRNA for hypothetical protein, clo...	56	1e-04
91	ref|NM_001006500.1| Gallus gallus polymerase (RNA) III (DNA dire...	56	1e-04
92	ref|NM_001021416.1| Schizosaccharomyces pombe 972h- DNA-directed...	56	1e-04
93	gb|AY490552.1| Podocarpus macrophyllus RNA polymerase II large s...	56	1e-04
94	gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, par...	54	4e-04
95	gb|DQ223185.1| Glaucocystis nostochinearum strain UTEX-B 1929 DN...	54	4e-04
96	ref|XM_637632.1| Dictyostelium discoideum RNA polymerase III, la...	52	0.002
97	gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173...	52	0.002
98	gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome	52	0.002
99	gb|U61763.1|ZPU61763 Zeldia punctata RNA polymerase II large sub...	52	0.002
100	gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr...	50	0.006
101	gb|AY602189.1| Caenorhabditis sp. DF5070 RNA polymerase 2 gene, ...	50	0.006
102	ref|XM_714321.1| Candida albicans SC5314 RNA polymerase II large...	50	0.006
103	ref|XM_653321.1| Aspergillus nidulans FGSC A4 hypothetical prote...	50	0.006
104	ref|XM_570943.1| Cryptococcus neoformans var. neoformans JEC21 D...	50	0.006
105	gb|AY305605.1| Podura aquatica clone PaqBpol RNA polymerase II l...	48	0.026
106	gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome	48	0.026
107	gb|AY601776.1|AY601775S2 Caenorhabditis sp. CB5161 RNA polymeras...	46	0.10
108	gb|AY601773.1|AY601772S2 Caenorhabditis sp. PS1010 RNA polymersa...	46	0.10
109	ref|XM_876181.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA ...	46	0.10
110	ref|XM_876122.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA ...	46	0.10
111	ref|XM_876055.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA ...	46	0.10
112	ref|XM_596010.2| PREDICTED: Bos taurus polymerase (RNA) II (DNA ...	46	0.10
113	ref|XM_655024.1| Aspergillus nidulans FGSC A4 hypothetical prote...	46	0.10
114	ref|XM_455310.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F05071g ...	46	0.10
115	gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome	46	0.10
116	emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	46	0.10
117	dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020	46	0.10
118	gb|U73448.1|UNU73448 Unidentified nematode large subunit RNA pol...	46	0.10
119	gb|AY490554.1| Ephedra viridis RNA polymerase II large subunit (...	46	0.10
120	gb|U10338.1|IOU10338 Ilyanassa obsoleta RNA polymerase II larges...	46	0.10
121	ref|XM_638427.1| Dictyostelium discoideum RNA polymerase I, larg...	44	0.40
122	gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete...	44	0.40
123	gb|AY305548.1| Armadillidium vulgare clone Avu2Apol RNA polymera...	44	0.40
124	ref|XM_705669.1| Candida albicans SC5314 RNA polymerase I larges...	44	0.40
125	ref|XM_705631.1| Candida albicans SC5314 RNA polymerase I larges...	44	0.40
126	ref|XM_660493.1| Cryptosporidium hominis TU502 DNA-directed RNA ...	44	0.40
127	ref|XM_661065.1| Cryptosporidium hominis TU502 DNA-directed RNA ...	44	0.40
128	gb|DQ083406.1| Nosema plutellae isolate PX2 DNA-dependent RNA po...	44	0.40
129	gb|DQ167785.1| Drosophila teissieri putative RNA polymerase II 2...	44	0.40
130	gb|DQ167784.1| Drosophila simulans putative RNA polymerase II 21...	44	0.40
131	gb|DQ167783.1| Drosophila orena putative RNA polymerase II 215 k...	44	0.40
132	gb|DQ167782.1| Drosophila erecta putative RNA polymerase II 215 ...	44	0.40
133	gb|AF395110.1| Naegleria gruberi RNA polymerase II largest subun...	44	0.40
134	ref|NM_078569.2| Drosophila melanogaster RNA polymerase II 215kD...	44	0.40
135	gb|AY089555.1| Drosophila melanogaster LD43558 full insert cDNA	44	0.40
136	ref|XM_626822.1| Cryptosporidium parvum Iowa II putative DNA-dir...	44	0.40
137	gb|DQ223186.1| Cyanophora paradoxa strain CCAC 0074 DNA-dependen...	44	0.40
138	gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	44	0.40
139	gb|AF315820.1|AF315820 Glaucosphaera vacuolata DNA-dependent RNA...	44	0.40
140	gb|AF138970.1| Armadillidium vulgare RNA polymerase II largest s...	44	0.40
141	gb|AC153817.6| Mus musculus BAC RP23-11P24 (Roswell Park Cancer...	44	0.40
142	gb|AC115598.2| Dictyostelium discoideum chromosome 2 map 581427-...	44	0.40
143	ref|NM_210463.1| Eremothecium gossypii AER252Cp (AER252C), mRNA	44	0.40
144	gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 ...	44	0.40
145	gb|U10334.1|CGU10334 Crassostrea gigas RNA polymerase II largest...	44	0.40
146	gb|M27431.1|DRORPRIIA D.melanogaster RpII215 gene encoding RNA p...	44	0.40
147	gb|AY601771.1|AY601770S2 Caenorhabditis remanei strain SB146 RNA...	42	1.6
148	gb|AY305645.1| Peripatus sp. Per2 RNA polymerase II largest subu...	42	1.6
149	gb|AC121267.17| Mus musculus chromosome 19, clone RP24-444E1, co...	42	1.6
150	ref|XM_505388.1| Yarrowia lipolytica CLIB122, YALI0F13783g predi...	42	1.6
151	emb|AL161655.8| Human DNA sequence from clone RP11-116E13 on chr...	42	1.6
152	ref|XM_783160.1| PREDICTED: Strongylocentrotus purpuratus simila...	42	1.6
153	gb|AF240892.1| Peripatus sp. 'Per2' RNA polymerase II largest su...	42	1.6
154	gb|U73454.1|MSU73454 Mesorhabditis sp. large subunit RNA polymer...	42	1.6
155	gb|AC112967.14| Mus musculus chromosome 19, clone RP24-151O21, c...	42	1.6
156	gb|AC162372.5| Mus musculus chromosome 19, clone RP23-177G18, co...	42	1.6
157	gb|DQ294584.1| Polychytrium aggregatum isolate AFTOL-ID-24 RNA p...	42	1.6
158	emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1...	42	1.6
159	ref|NM_017131.2| Rattus norvegicus calsequestrin 2 (Casq2), mRNA	40	6.3
160	ref|XM_513677.1| PREDICTED: Pan troglodytes similar to Calseques...	40	6.3
161	ref|NM_001232.1| Homo sapiens calsequestrin 2 (cardiac muscle) (...	40	6.3
162	ref|XM_423690.1| PREDICTED: Gallus gallus similar to DNA-directe...	40	6.3
163	ref|XM_872588.1| PREDICTED: Bos taurus similar to calcyphosine-l...	40	6.3
164	ref|XM_872393.1| PREDICTED: Bos taurus similar to calcyphosine-l...	40	6.3
165	ref|XM_872294.1| PREDICTED: Bos taurus similar to calcyphosine-l...	40	6.3
166	ref|XM_420851.1| PREDICTED: Gallus gallus similar to RNA polymer...	40	6.3
167	gb|AC145898.4| Pan troglodytes BAC clone RP43-9D19 from 7, compl...	40	6.3
168	gb|AC147153.2| Mus musculus chromosome y clone RP24-373C15, comp...	40	6.3
169	ref|XM_761237.1| Theileria parva strain Muguga chromosome 1 RNA ...	40	6.3
170	emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chro...	40	6.3
171	emb|AL391005.9| Human DNA sequence from clone RP11-288A5 on chro...	40	6.3
172	emb|X55040.1|OCCALSEQ O.cuniculus mRNA for calsequestrin	40	6.3
173	emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp...	40	6.3
174	gb|DQ383656.1| Leishmania herreri strain LV341 (ISHA/CR/74/Sh-1)...	40	6.3
175	gb|DQ383652.1| Leishmania colombiensis strain L1245 (IGOM/PA/85/...	40	6.3
176	emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; ...	40	6.3
177	emb|BX511135.6| Zebrafish DNA sequence from clone CH211-134D21 i...	40	6.3
178	emb|CR392331.15| Zebrafish DNA sequence from clone CH211-9F23 in...	40	6.3
179	emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on ch...	40	6.3
180	emb|AL645946.6| Mouse DNA sequence from clone DN-276O13 on chrom...	40	6.3
181	emb|CR858976.1| Pongo pygmaeus mRNA; cDNA DKFZp468D075 (from clo...	40	6.3
182	gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome...	40	6.3
183	dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012	40	6.3
184	gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE...	40	6.3
185	gb|AC002341.3| Arabidopsis thaliana chromosome 2 clone T14G11 ma...	40	6.3
186	ref|XM_704633.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
187	ref|XM_704631.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
188	ref|XM_704636.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
189	ref|XM_704635.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
190	ref|XM_704632.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
191	ref|XM_704640.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
192	ref|XM_704638.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
193	ref|XM_704642.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
194	ref|XM_704641.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
195	ref|XM_704637.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
196	ref|XM_704634.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
197	ref|XM_704639.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
198	ref|XM_677590.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	6.3
199	ref|XM_703295.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
200	ref|XM_703294.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
201	ref|XM_703293.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
202	ref|XM_703292.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
203	ref|XM_703291.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
204	ref|XM_703290.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
205	ref|XM_703289.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
206	ref|XM_703288.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
207	ref|XM_703287.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
208	ref|XM_703286.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
209	ref|XM_703285.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
210	ref|XM_703284.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
211	ref|XM_703283.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
212	ref|XM_703282.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
213	ref|XM_681282.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	6.3
214	gb|AC069304.7| Homo sapiens BAC clone RP11-632K21 from 7, comple...	40	6.3
215	emb|BX005475.19| Zebrafish DNA sequence from clone CH211-165I18 ...	40	6.3
216	gb|BC022288.1| Homo sapiens calsequestrin 2 (cardiac muscle), mR...	40	6.3
217	dbj|AK051398.1| Mus musculus 12 days embryo spinal ganglion cDNA...	40	6.3
218	dbj|AK031487.1| Mus musculus 13 days embryo male testis cDNA, RI...	40	6.3
219	dbj|AK015421.1| Mus musculus adult male testis cDNA, RIKEN full-...	40	6.3
220	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
221	ref|XM_343922.2| PREDICTED: Rattus norvegicus polymerase (RNA) I...	40	6.3
222	dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
223	gb|BC092229.1| Mus musculus calsequestrin 2, mRNA (cDNA clone MG...	40	6.3
224	dbj|AK129891.1| Homo sapiens cDNA FLJ26381 fis, clone HRT06737, ...	40	6.3
225	dbj|AK129831.1| Homo sapiens cDNA FLJ26321 fis, clone HRT00385, ...	40	6.3
226	gb|AF001334.1|AF001334 Rattus norvegicus cardiac calsequestrin g...	40	6.3
227	gb|AC154459.2| Mus musculus BAC clone RP24-162O6 from 17, comple...	40	6.3
228	gb|AC102608.14| Mus musculus chromosome 3, clone RP23-402L6, com...	40	6.3
229	emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 i...	40	6.3
230	emb|CT571245.12| Mouse DNA sequence from clone RP23-2N7 on chrom...	40	6.3
231	gb|U91483.1|MMU91483 Mus musculus cardiac calsequestrin mRNA, co...	40	6.3
232	gb|AF068244.1|AF068244 Mus musculus cardiac calsequestrin mRNA, ...	40	6.3
233	gb|AF009158.1|AF009158 Endotrypanum monterogei RNA polymerase II...	40	6.3
234	emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chr...	40	6.3
235	ref|NM_009814.1| Mus musculus calsequestrin 2 (Casq2), mRNA	40	6.3
236	gb|BC072547.1| Rattus norvegicus calsequestrin 2, mRNA (cDNA clo...	40	6.3
237	emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, co...	40	6.3
238	emb|AL929106.5| Mouse DNA sequence from clone RP23-446N16 on chr...	40	6.3
239	gb|U33287.1|RNU33287 Rattus norvegicus calsequestrin mRNA, compl...	40	6.3
240	emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chrom...	40	6.3
241	dbj|D55655.1| Homo sapiens mRNA for cardiac calsequestrin, compl...	40	6.3

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  597 bits (301), Expect = e-167
 Identities = 418/457 (91%)
 Strand = Plus / Minus

                                                                           
Query: 5       cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
               ||||||||  |||| ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 3222532 cagcttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctc 3222473

                                                                           
Query: 65      aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
               || ||||||||||||||||| |||||||| |||||||||||  | ||||| |||||||||
Sbjct: 3222472 aaacggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgac 3222413

                                                                           
Query: 125     atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
               ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| 
Sbjct: 3222412 atgcacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgtt 3222353

                                                                           
Query: 185     cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
               |||||||||||||| ||||| || || ||||||||||| || ||||| ||||||||||||
Sbjct: 3222352 cctggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatc 3222293

                                                                           
Query: 245     ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
               |||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 3222292 ctgcttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 3222233

                                                                           
Query: 305     tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
                ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 3222232 gcttttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcct 3222173

                                                                           
Query: 365     ggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgact 424
               ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 3222172 ggtgaaatgattggatgcgtagctgcacagtccattggagaaccggcaactcagatgacc 3222113

                                                    
Query: 425     ctgaatactttccattatgctggtgttagtgctaaga 461
               ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 3222112 ctgaatacttttcattatgctggtgtcagtgccaaga 3222076

---

>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1177_E11
          Length = 92375

 Score =  597 bits (301), Expect = e-167
 Identities = 418/457 (91%)
 Strand = Plus / Minus

                                                                         
Query: 5     cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
             ||||||||  |||| ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 78612 cagcttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctc 78553

                                                                         
Query: 65    aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
             || ||||||||||||||||| |||||||| |||||||||||  | ||||| |||||||||
Sbjct: 78552 aaacggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgac 78493

                                                                         
Query: 125   atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
             ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| 
Sbjct: 78492 atgcacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgtt 78433

                                                                         
Query: 185   cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
             |||||||||||||| ||||| || || ||||||||||| || ||||| ||||||||||||
Sbjct: 78432 cctggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatc 78373

                                                                         
Query: 245   ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
             |||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 78372 ctgcttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 78313

                                                                         
Query: 305   tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
              ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 78312 gcttttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcct 78253

                                                                         
Query: 365   ggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgact 424
             ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 78252 ggtgaaatgattggatgcgtagctgcacagtccattggagaaccggcaactcagatgacc 78193

                                                  
Query: 425   ctgaatactttccattatgctggtgttagtgctaaga 461
             ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 78192 ctgaatacttttcattatgctggtgtcagtgccaaga 78156

---

>ref|XM_493925.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5226

 Score =  573 bits (289), Expect = e-160
 Identities = 415/457 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
            |||||||| ||||| ||| | |||||||| || ||||||||||||||||||||||| |||
Sbjct: 2722 cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc 2781

                                                                        
Query: 65   aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
            ||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||
Sbjct: 2782 aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac 2841

                                                                        
Query: 125  atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2842 atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc 2901

                                                                        
Query: 185  cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
            |||||||| ||||  || || || || ||||||||||| || ||||| ||||||||||||
Sbjct: 2902 cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc 2961

                                                                        
Query: 245  ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
            |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 2962 ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 3021

                                                                        
Query: 305  tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
             ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| 
Sbjct: 3022 gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca 3081

                                                                        
Query: 365  ggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgact 424
            ||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| 
Sbjct: 3082 ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc 3141

                                                 
Query: 425  ctgaatactttccattatgctggtgttagtgctaaga 461
            |||||||||||||||||||||||||| ||||| ||||
Sbjct: 3142 ctgaatactttccattatgctggtgtcagtgccaaga 3178

---

>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score =  573 bits (289), Expect = e-160
 Identities = 415/457 (90%)
 Strand = Plus / Minus

                                                                         
Query: 5     cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
             |||||||| ||||| ||| | |||||||| || ||||||||||||||||||||||| |||
Sbjct: 73561 cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc 73502

                                                                         
Query: 65    aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
             ||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||
Sbjct: 73501 aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac 73442

                                                                         
Query: 125   atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 73441 atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc 73382

                                                                         
Query: 185   cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
             |||||||| ||||  || || || || ||||||||||| || ||||| ||||||||||||
Sbjct: 73381 cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc 73322

                                                                         
Query: 245   ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
             |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 73321 ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 73262

                                                                         
Query: 305   tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
              ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| 
Sbjct: 73261 gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca 73202

                                                                         
Query: 365   ggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgact 424
             ||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| 
Sbjct: 73201 ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc 73142

                                                  
Query: 425   ctgaatactttccattatgctggtgttagtgctaaga 461
             |||||||||||||||||||||||||| ||||| ||||
Sbjct: 73141 ctgaatactttccattatgctggtgtcagtgccaaga 73105

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  573 bits (289), Expect = e-160
 Identities = 415/457 (90%)
 Strand = Plus / Minus

                                                                           
Query: 5       cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
               |||||||| ||||| ||| | |||||||| || ||||||||||||||||||||||| |||
Sbjct: 2878950 cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc 2878891

                                                                           
Query: 65      aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
               ||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||
Sbjct: 2878890 aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac 2878831

                                                                           
Query: 125     atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
               ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2878830 atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc 2878771

                                                                           
Query: 185     cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
               |||||||| ||||  || || || || ||||||||||| || ||||| ||||||||||||
Sbjct: 2878770 cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc 2878711

                                                                           
Query: 245     ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
               |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 2878710 ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 2878651

                                                                           
Query: 305     tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
                ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| 
Sbjct: 2878650 gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca 2878591

                                                                           
Query: 365     ggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgact 424
               ||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| 
Sbjct: 2878590 ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc 2878531

                                                    
Query: 425     ctgaatactttccattatgctggtgttagtgctaaga 461
               |||||||||||||||||||||||||| ||||| ||||
Sbjct: 2878530 ctgaatactttccattatgctggtgtcagtgccaaga 2878494

---

>gb|AF519538.1| Zea mays RNA polymerase II largest subunit (RPB1) mRNA, partial cds
          Length = 3027

 Score =  470 bits (237), Expect = e-129
 Identities = 351/389 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
            ||||||||| |||| || ||||||||||| |||||| | |||||||||||||| ||||||
Sbjct: 2632 cagcttgggtctgagatcaccacaactggtgacaattcgtggcctatgcctgtgaacctc 2691

                                                                        
Query: 65   aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
            ||||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 2692 aagcgactcatctggaatgctcagaagacattcaagattgattttagaagaccttctgac 2751

                                                                        
Query: 125  atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 2752 atgcacccgatggaaattgtggaagcgatagataaactgcaagaaagacttaaggttgta 2811

                                                                        
Query: 185  cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
            |||||||||||||| |||||||| || || |||||||| || || || ||||| ||||||
Sbjct: 2812 cctggtgatgatgctatgagcattgaggcccagaagaatgcaaccttgttctttaatatc 2871

                                                                        
Query: 245  ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
            || ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 2872 ctacttcgtagcacgtttgctagcaagagggtcttgaaggaatacaggcttacaaaggaa 2931

                                                                        
Query: 305  tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
             ||||||||||||| ||||||||||||||||| || || || ||||||||||| || |||
Sbjct: 2932 gcttttgaatgggttattggtgagattgaatccaggtttcttcagtctttggtggcccct 2991

                                         
Query: 365  ggtgaaatgattggatgtgtggctgcaca 393
            || || |||||||||||||||||||||||
Sbjct: 2992 ggcgagatgattggatgtgtggctgcaca 3020

---

>gb|AF519541.1| Amborella trichopoda RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3039

 Score =  192 bits (97), Expect = 7e-46
 Identities = 292/357 (81%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            ||||| |||||||| || |||||| |||| || |||||||||||||| |  || ||| ||
Sbjct: 2683 tggcccatgcctgtgaatctcaagaggctgatttggaatgctcagaaaatgtttaaggtt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            || ||||||||||||||||| |||||||||||||| |||||||||||  | |||||||| 
Sbjct: 2743 gatttaagaagaccttctgatatgcacccaatggagattgtggaagcagttgataagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||||||||| ||||| || ||||||||    ||||| || || ||||| ||||| 
Sbjct: 2803 caggaaagacttaaagttgttccaggtgatgacctgatgagtatagaggctcaaaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||  | || ||||| || || |||||||| || |||||||||||| | |||||||||
Sbjct: 2863 gctacactctttttcaacatactccttcgtagtacttttgctagcaagcgtgtattgaaa 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            ||||| ||||| ||    ||| ||||||| ||||| ||||||||||| || || ||||||
Sbjct: 2923 gaatataggctcactcgtgaagcttttgattgggttattggtgagatagagtctagattc 2982

                                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccatt 400
             | |||||| |||| || || ||||| |||||||| ||||| || || |||||||||
Sbjct: 2983 ttgcagtctctggtggcaccaggtgagatgattggttgtgtcgccgctcagtccatt 3039

---

>gb|AF519539.1| Magnolia x soulangeana RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3030

 Score =  186 bits (94), Expect = 4e-44
 Identities = 292/358 (81%)
 Strand = Plus / Plus

                                                                        
Query: 42   catggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaaga 101
            |||||||||||||||| ||||||||| ||||||||||||||||||| ||||| || ||| 
Sbjct: 2672 catggcctatgcctgttaacctcaagaggcttatctggaatgctcaaaagacatttaagg 2731

                                                                        
Query: 102  ttgacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagc 161
            ||||||| ||||| || |||||||||||||| ||||| ||||| |||||  | || ||||
Sbjct: 2732 ttgacttgagaaggccatctgacatgcaccctatggagattgttgaagcagttgacaagc 2791

                                                                        
Query: 162  tgcaagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaaga 221
            | || |||||  | || || || || |||||||||    ||||||| ||||||||||| |
Sbjct: 2792 ttcaggaaaggttgaaagtcgttccaggtgatgattttctgagcatggaagctcagaaaa 2851

                                                                        
Query: 222  acgctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattga 281
            | || ||  | |||||||| || |||||||||||||||||||| || ||| | || ||||
Sbjct: 2852 atgcaacccttttcttcaacattctgcttcgtagcacatttgccagtaagcgtgtgttga 2911

                                                                        
Query: 282  aagaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagat 341
            |||| |||||||| ||    ||| | ||||||||||| || |||||||| |||||  |||
Sbjct: 2912 aagagtacaggctaactcgtgaagcatttgaatgggtaatcggtgagatagaatctcgat 2971

                                                                      
Query: 342  tcctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccat 399
            || | || || ||||| || || |||||||||||||| ||||||||||| || |||||
Sbjct: 2972 tcttacaatcattggttgcaccaggtgaaatgattggctgtgtggctgcccaatccat 3029

---

>emb|X52495.1|GMRPB1C Soybean RPB1-C gene for largest subunit of RNA polymerase II
          Length = 4153

 Score =  145 bits (73), Expect = 1e-31
 Identities = 202/245 (82%)
 Strand = Plus / Plus

                                                                       
Query: 51  tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaa 110
           ||||||| ||||||||| ||||||||||||||||||||||||| || ||| |||||||  
Sbjct: 500 tgcctgttaacctcaagaggcttatctggaatgctcagaagacatttaaggttgacttcc 559

                                                                       
Query: 111 gaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaa 170
           |||| |||||||| ||||| |||||||||||||||||||| || |||||||| || ||  
Sbjct: 560 gaaggccttctgatatgcatccaatggaaattgtggaagccatcgataagctccaggagc 619

                                                                       
Query: 171 gacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactt 230
           | ||||||||||| || || || || ||| ||||    |||||||| ||||| |||||| 
Sbjct: 620 ggcttaaggttgttcccggcgaggacgccttgagtcaagaagctcaaaagaatgctactc 679

                                                                       
Query: 231 tattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaataca 290
           |  |||||||||| ||||| || ||||| || || || || ||||| ||| | |||||||
Sbjct: 680 tcctcttcaatattctgctccgcagcactttcgccagtaaaagggtcttggaggaataca 739

                
Query: 291 ggctt 295
           |||||
Sbjct: 740 ggctt 744



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 383 gtggctgcacagtccattggagaaccggcaactcagatgactctgaatactttcca 438
           ||||||||||| || ||||| ||||| || |||||||||||||| || ||||||||
Sbjct: 832 gtggctgcacaatcaattggtgaacctgctactcagatgactctcaacactttcca 887

---

>gb|AY490553.1| Ginkgo biloba RNA polymerase II large subunit (rpb1) mRNA, partial
            cds
          Length = 3039

 Score =  145 bits (73), Expect = 1e-31
 Identities = 286/357 (80%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||||||||||| || || ||| |||| || |||||||| |||||||| ||||| |||
Sbjct: 2683 tggcctatgcctgtaaatctgaagaggctaatatggaatgcccagaagacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            ||||| || | ||| || || ||||| || ||||| |||||||||||  | || ||||| 
Sbjct: 2743 gacttgaggaaaccgtcggatatgcatcccatggagattgtggaagctgttgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| ||||||||||| |||||||||||    ||||| || || |||||||| || 
Sbjct: 2803 caggaaaggcttaaggttgttcctggtgatgaccttatgagtattgaggctcagaaaaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||| | || ||||| || || || || || |||||||| |||||  | ||  |||| 
Sbjct: 2863 gctactctttttttcaacatactactccgcagtacatttgccagcaaacgtgtgctgaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            |||||||| || || |  ||| ||||||||||||| |||||||||||||| ||  | |||
Sbjct: 2923 gaatacagactaactagagaagcttttgaatgggtgattggtgagattgagtctcgtttc 2982

                                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccatt 400
            || |||||||| || || || ||||| |||||||| ||||| || ||||||||||||
Sbjct: 2983 ctgcagtctttagtggcaccaggtgagatgattggttgtgttgcagcacagtccatt 3039

---

>gb|AF519536.1| Pinus nigra RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score =  129 bits (65), Expect = 9e-27
 Identities = 284/357 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||| ||||||| ||||| ||| ||||||| ||||||   |||||||| ||||| |||
Sbjct: 2683 tggcctctgcctgtaaaccttaagaggcttatatggaatagccagaagaccttcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            ||    |||||||| || |||||||| || ||||| ||||| ||||| || || |   ||
Sbjct: 2743 gatgcgagaagaccctcagacatgcatcccatggagattgtagaagcaattgacagattg 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||||||||||||||| |||||||||||   |||||| || || || ||||| || 
Sbjct: 2803 caggaaagacttaaggttgttcctggtgatgacctcatgagtattgaggcacagaaaaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            || ||| | || ||||||||  ||||||| || ||||||||||| ||  | ||| |||| 
Sbjct: 2863 gccactctctttttcaatattttgcttcgaagtacatttgctagtaaacgtgtactgaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            || |||   || ||||  ||| | |||||||||||  ||||||||||||||||  | |||
Sbjct: 2923 gagtaccacctcacaagagaagcatttgaatgggtagttggtgagattgaatctcgtttc 2982

                                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccatt 400
            || ||||| || |||||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct: 2983 ctgcagtccttagtagctccaggtgagatgattggctgtgttgcagcacagtccatt 3039

---

>gb|DQ020635.1| Rhododendron macrophyllum RNA polymerase II largest subunit (RPB1)
            gene, exons 8 through 11 and partial cds
          Length = 2072

 Score =  125 bits (63), Expect = 1e-25
 Identities = 162/195 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2    ttgcagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaac 61
            |||||||| || || |||||| | || ||||| || ||||  ||||| |||||||| || 
Sbjct: 1707 ttgcagctgggaacagaaattgcaactactggtgataataattggccaatgcctgtgaat 1766

                                                                        
Query: 62   ctcaagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttct 121
            ||   ||||||||| |||||||| |||||||| || ||||||||| ||||| ||||||||
Sbjct: 1767 ctagggcggcttatttggaatgcacagaagacgtttaagattgacctaagacgaccttct 1826

                                                                        
Query: 122  gacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggtt 181
            || |||||||||||||| |||||||||||  | |||||||| || |||||  | ||||||
Sbjct: 1827 gatatgcacccaatggagattgtggaagctgttgataagcttcaggaaaggttgaaggtt 1886

                           
Query: 182  gtccctggtgatgat 196
            || ||||||||||||
Sbjct: 1887 gtgcctggtgatgat 1901

---

>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
           PAC clone:P0438H08
          Length = 148626

 Score =  125 bits (63), Expect = 1e-25
 Identities = 90/99 (90%)
 Strand = Plus / Minus

                                                                       
Query: 5   cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
           ||||||||  |||| ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 99  cagcttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctc 40

                                                  
Query: 65  aagcggcttatctggaatgctcagaagactttcaagatt 103
           || ||||||||||||||||| |||||||| |||||||||
Sbjct: 39  aaacggcttatctggaatgcacagaagacattcaagatt 1

---

>gb|AF519540.1| Nymphaea odorata RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3039

 Score =  121 bits (61), Expect = 2e-24
 Identities = 244/305 (80%)
 Strand = Plus / Plus

                                                                        
Query: 29   actggcgacaatacatggcctatgcctgtcaacctcaagcggcttatctggaatgctcag 88
            ||||| |||||| ||||||| ||||| || || |||||  |||||||||||||||| || 
Sbjct: 2668 actggggacaattcatggccaatgccggtgaatctcaaaaggcttatctggaatgcacaa 2727

                                                                        
Query: 89   aagactttcaagattgacttaagaagaccttctgacatgcacccaatggaaattgtggaa 148
            ||||| || ||| ||||| | |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 2728 aagacgtttaaggttgacctgagaagaccatctgatatgcaccctatggagatagtggaa 2787

                                                                        
Query: 149  gcgatagataagctgcaagaaagacttaaggttgtccctggtgatgatgccatgagcatc 208
            ||  | || || || || ||||| || || ||||| |||||||| ||||| ||||| || 
Sbjct: 2788 gctgttgacaaacttcaggaaaggctgaaagttgtacctggtgaggatgcaatgagtatg 2847

                                                                        
Query: 209  gaagctcagaagaacgctactttattcttcaatatcctgcttcgtagcacatttgctagc 268
            || ||||| ||||| |||||  | || |||||||| || ||| | ||||||||||| |||
Sbjct: 2848 gaggctcaaaagaatgctaccctttttttcaatatactccttagaagcacatttgcaagc 2907

                                                                        
Query: 269  aagagggtattgaaagaatacaggcttacaaaggaatcttttgaatgggtcattggtgag 328
            ||| | || |  ||||| || |||||||||   ||| | ||||| ||||| |||||||||
Sbjct: 2908 aagcgtgtgtcaaaagagtataggcttacacgtgaagcatttgactgggtgattggtgag 2967

                 
Query: 329  attga 333
            |||||
Sbjct: 2968 attga 2972

---

>gb|AY490550.1| Thuja occidentalis RNA polymerase II large subunit (rpb1) mRNA,
            partial cds
          Length = 3039

 Score =  121 bits (61), Expect = 2e-24
 Identities = 280/353 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||||||||||| || || ||  |||| ||||||||||| |||||||| ||||| |||
Sbjct: 2683 tggcctatgcctgtaaatctgaaaaggctcatctggaatgcccagaagacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            ||   ||| | ||  || || ||||| || ||||| ||||| ||||| || || ||||| 
Sbjct: 2743 gatccaaggaaacgatcagatatgcatcctatggagattgtagaagcaattgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| || |||||||| || |||||||||  ||| || || || || |||||||| 
Sbjct: 2803 caggaaaggctaaaggttgttccaggtgatgatctcatcagtattgaggcccagaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            || ||| | ||||||||||| || || || || |||||||| || ||  | ||| | || 
Sbjct: 2863 gccactcttttcttcaatattctactgcgcagtacatttgcaagtaaacgtgtactaaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            || |||   |||||||||||| | |||||||||||  ||||||||||||||||  | |||
Sbjct: 2923 gagtaccaccttacaaaggaagcatttgaatgggtagttggtgagattgaatctcgtttc 2982

                                                                 
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtc 396
            || |||||| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct: 2983 cttcagtctatagtagctccgggggagatgattggatgtgtggcagcacagtc 3035

---

>gb|AF519535.1| Cycas revoluta RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score =  113 bits (57), Expect = 5e-22
 Identities = 282/357 (78%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            ||||| |||||||| || || ||| |||| ||||||||||| ||||| || ||||| |||
Sbjct: 2683 tggcccatgcctgtgaatctgaagaggctaatctggaatgcccagaaaacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            || || ||||  ||||| || ||||| || ||||| |||||||||||  | || ||||| 
Sbjct: 2743 gatttgagaaagccttcagatatgcatcccatggagattgtggaagctgttgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| ||||| ||||| ||||| |||||    ||||| || || || || ||||| 
Sbjct: 2803 caggaaaggcttaaagttgttcctggcgatgaccttatgagtatagaggcccaaaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||| | || || || ||  | ||||| || ||||||||||| ||  | ||||| || 
Sbjct: 2863 gctactctcttttttaacattttacttcgcagtacatttgctagtaaacgtgtattaaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            |||||| ||||||| |  ||| | ||||||||||| |||||||||||||| ||  | |||
Sbjct: 2923 gaataccggcttaccagagaagcatttgaatgggtgattggtgagattgagtctcgtttc 2982

                                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccatt 400
            || || |||||||| ||||| ||||| |||||||| || || || ||||||||||||
Sbjct: 2983 ctgcaatctttggtggctccaggtgagatgattggttgcgtagcagcacagtccatt 3039

---

>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE
          Length = 96647

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                         
Query: 53    cctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaaga 112
             ||||||||||| ||  |||||||||||||||| |||||||| || ||| |||||||  ||
Sbjct: 16735 cctgtcaaccttaaaaggcttatctggaatgcgcagaagacctttaaggttgacttccga 16676

                                                                         
Query: 113   agaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaaga 172
             ||||||||||| ||||| || ||||||||||||||||| || |||||||| || || |||
Sbjct: 16675 agaccttctgatatgcatccgatggaaattgtggaagctattgataagctccaggagaga 16616

                 
Query: 173   ctta 176
             ||||
Sbjct: 16615 ctta 16612



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                         
Query: 363   ctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatga 422
             |||| ||||||||||| |||||||| ||||| || ||||| ||||| || ||||||||||
Sbjct: 16425 ctggggaaatgattggttgtgtggcagcacaatcaattggtgaacctgctactcagatga 16366

                                                    
Query: 423   ctctgaatactttccattatgctggtgttagtgctaaga 461
             |||| || |||||||| || |||||||| ||||||||||
Sbjct: 16365 ctctcaacactttccactacgctggtgtcagtgctaaga 16327



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 236   ttcaatatcctgcttcgtagcacatttgc 264
             |||||||| |||||||||||||| |||||
Sbjct: 16552 ttcaatattctgcttcgtagcacttttgc 16524

---

>ref|NM_119746.2| Arabidopsis thaliana NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase AT4G35800 (NRPB1)
            mRNA, complete cds
          Length = 5893

 Score =  103 bits (52), Expect = 5e-19
 Identities = 226/284 (79%)
 Strand = Plus / Plus

                                                                        
Query: 178  ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
            |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 3057 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 3116

                                                                        
Query: 238  caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
             || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 3117 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 3176

                                                                        
Query: 298  aaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggt 357
                ||  ||||||| ||||||||||||||||||||||| || ||  | || ||  | ||
Sbjct: 3177 ccgcgaggcttttgagtgggtcattggtgagattgaatcaaggtttttacaatcgctagt 3236

                                                                        
Query: 358  agctcctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactca 417
             || || || |||||||| || ||||| ||||| || || ||||||||||| || || ||
Sbjct: 3237 ggccccaggggaaatgatcggttgtgttgctgctcaatcaattggagaacctgctacgca 3296

                                                        
Query: 418  gatgactctgaatactttccattatgctggtgttagtgctaaga 461
            ||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 3297 gatgactctgaataccttccattatgctggtgtcagtgcaaaga 3340



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
            ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 2930 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 2987

---

>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84
          Length = 195452

 Score =  103 bits (52), Expect = 5e-19
 Identities = 226/284 (79%)
 Strand = Plus / Minus

                                                                         
Query: 178   ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
             |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 35559 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 35500

                                                                         
Query: 238   caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
              || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 35499 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 35440

                                                                         
Query: 298   aaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggt 357
                 ||  ||||||| ||||||||||||||||||||||| || ||  | || ||  | ||
Sbjct: 35439 ccgcgaggcttttgagtgggtcattggtgagattgaatcaaggtttttacaatcgctagt 35380

                                                                         
Query: 358   agctcctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactca 417
              || || || |||||||| || ||||| ||||| || || ||||||||||| || || ||
Sbjct: 35379 ggccccaggggaaatgatcggttgtgttgctgctcaatcaattggagaacctgctacgca 35320

                                                         
Query: 418   gatgactctgaatactttccattatgctggtgttagtgctaaga 461
             ||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 35319 gatgactctgaataccttccattatgctggtgtcagtgcaaaga 35276



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 51    tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
             ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 35686 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 35629

---

>emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project)
          Length = 99461

 Score =  103 bits (52), Expect = 5e-19
 Identities = 226/284 (79%)
 Strand = Plus / Minus

                                                                         
Query: 178   ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
             |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 27363 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 27304

                                                                         
Query: 238   caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
              || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 27303 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 27244

                                                                         
Query: 298   aaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggt 357
                 ||  ||||||| ||||||||||||||||||||||| || ||  | || ||  | ||
Sbjct: 27243 ccgcgaggcttttgagtgggtcattggtgagattgaatcaaggtttttacaatcgctagt 27184

                                                                         
Query: 358   agctcctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactca 417
              || || || |||||||| || ||||| ||||| || || ||||||||||| || || ||
Sbjct: 27183 ggccccaggggaaatgatcggttgtgttgctgctcaatcaattggagaacctgctacgca 27124

                                                         
Query: 418   gatgactctgaatactttccattatgctggtgttagtgctaaga 461
             ||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 27123 gatgactctgaataccttccattatgctggtgtcagtgcaaaga 27080



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 51    tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
             ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 27490 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 27433

---

>emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polymerase large subunit (EC
            2.7.7.6)
          Length = 9235

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                        
Query: 307  ttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcctgg 366
            |||||| ||||||||||||||||||||||| || ||  | || ||  | || || || ||
Sbjct: 5238 ttttgagtgggtcattggtgagattgaatcaaggtttttacaatcgctagtggccccagg 5297

                                                                        
Query: 367  tgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgactct 426
             |||||||| || ||||| ||||| || || ||||||||||| || || |||||||||||
Sbjct: 5298 ggaaatgatcggttgtgttgctgctcaatcaattggagaacctgctacgcagatgactct 5357

                                               
Query: 427  gaatactttccattatgctggtgttagtgctaaga 461
            |||||| ||||||||||||||||| ||||| ||||
Sbjct: 5358 gaataccttccattatgctggtgtcagtgcaaaga 5392



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
            ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 4982 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 5039

---

>gb|AF519534.1| Zamia muricata RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 280/357 (78%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||||||||||| || || ||| || | || |||||||| ||||| || ||||| |||
Sbjct: 2683 tggcctatgcctgtgaatctgaagaggttaatatggaatgcacagaaaacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            || || ||||  || || || ||||| || ||||| |||||||||||  | || ||||| 
Sbjct: 2743 gatttgagaaagccatcagatatgcatcccatggagattgtggaagctgttgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| ||||| || || |||||||||||    ||||| || || || |||||||| 
Sbjct: 2803 caggaaaggcttaaagtggttcctggtgatgaccttatgagtatagaggcccagaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||| | ||||| || || || ||||| || |||||||| || ||  | ||||| || 
Sbjct: 2863 gctactctcttctttaacattctacttcgcagtacatttgccagtaaacgtgtattaaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            |||||| ||||||| |  ||| | ||||||||||| |||||||||||||| ||  | |||
Sbjct: 2923 gaataccggcttaccagagaagcatttgaatgggtgattggtgagattgagtctcgtttc 2982

                                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccatt 400
            || |||||| | || || || ||||| |||||||| ||||| || || |||||||||
Sbjct: 2983 ctgcagtctctcgtggcaccaggtgagatgattggttgtgtagcagcgcagtccatt 3039

---

>emb|X52494.1|ATRPB1 Arabidopsis thaliana RPB1 gene for the largest subunit of RNA
            polymerase II
          Length = 8050

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 225/284 (79%)
 Strand = Plus / Plus

                                                                        
Query: 178  ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
            |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 4953 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 5012

                                                                        
Query: 238  caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
             || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 5013 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 5072

                                                                        
Query: 298  aaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggt 357
                ||  ||||||| ||||||||||||||||||||||| || ||  | || ||  | ||
Sbjct: 5073 ccgcgaggcttttgagtgggtcattggtgagattgaatcaaggtttttacaatcgctagt 5132

                                                                        
Query: 358  agctcctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactca 417
             || || || |||||||| || |||||  |||| || || ||||||||||| || || ||
Sbjct: 5133 ggccccaggggaaatgatcggttgtgttcctgctcaatcaattggagaacctgctacgca 5192

                                                        
Query: 418  gatgactctgaatactttccattatgctggtgttagtgctaaga 461
            ||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 5193 gatgactctgaataccttccattatgctggtgtcagtgcaaaga 5236



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
            ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 4826 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 4883

---

>gb|DQ020643.1| Antirrhinum majus RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 2342

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 291/373 (78%)
 Strand = Plus / Plus

                                                                        
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaa 110
            ||||||||||| | | | ||||| |||  ||||| |||||||| || ||| |||| ||  
Sbjct: 1955 tgcctgtcaacattaggaggcttgtcttaaatgcacagaagacatttaaggttgatttcc 2014

                                                                        
Query: 111  gaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaa 170
            |||| |||||||| ||||| || |||||||||||||| ||  | |||||| | |||||||
Sbjct: 2015 gaaggccttctgatatgcatccgatggaaattgtggaggctgtggataagttacaagaaa 2074

                                                                        
Query: 171  gacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactt 230
            | ||||||||||||  ||||||||||    |||| || || || || ||||| |||||  
Sbjct: 2075 ggcttaaggttgtcgttggtgatgattatctgagtatggaggcccaaaagaatgctacac 2134

                                                                        
Query: 231  tattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaataca 290
            | ||||| |||||  ||||||| ||  | || ||||| || ||||| ||||| ||||| |
Sbjct: 2135 ttttctttaatatattgcttcgaagtgccttggctagtaaaagggttttgaaggaatata 2194

                                                                        
Query: 291  ggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagt 350
            | || ||    ||| ||||||||||||| |||||||||||||||||  | || || ||||
Sbjct: 2195 gactcactcgcgaagcttttgaatgggttattggtgagattgaatctcgttttctgcagt 2254

                                                                        
Query: 351  ctttggtagctcctggtgaaatgattggatgtgtggctgcacagtccattggagaaccgg 410
            |  | || ||  |||| ||||||||||| ||||| |||||||| || ||||| || || |
Sbjct: 2255 cacttgtggcagctggggaaatgattggctgtgttgctgcacaatctattggtgagcctg 2314

                         
Query: 411  caactcagatgac 423
            | ||||| |||||
Sbjct: 2315 ccactcaratgac 2327

---

>dbj|D87294.1| Cricetulus griseus mRNA for RNA polymerase II largest subunit,
            complete cds
          Length = 6517

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||  |||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 3673 tggctgcacagtctcttggagaacctgccactcagatgactctgaacactttccactatg 3732

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3733 ctggtgt 3739

---

>dbj|D87293.1| Cricetulus griseus mRNA for RNA polymerase II largest subunit,
            ts-mutant, complete cds
          Length = 6645

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||  |||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 3589 tggctgcacagtctcttggagaacctgccactcagatgactctgaacactttccactatg 3648

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3649 ctggtgt 3655

---

>dbj|AB052229.1| Cricetulus griseus rpb1 mRNA for RNA polymerase II largest subunit,
            complete cds
          Length = 6612

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||  |||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 3561 tggctgcacagtctcttggagaacctgccactcagatgactctgaacactttccactatg 3620

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3621 ctggtgt 3627

---

>gb|AF241046.1|AF241045S2 Stenochrus portoricensis RNA polymerase II largest subunit mRNA,
           partial cds
          Length = 769

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 386 gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
           |||||||| ||| |||||||||| |||||||| |||||  | ||||||||||||||||||
Sbjct: 296 gctgcacaatcccttggagaacctgcaactcaaatgacattaaatactttccattatgct 355

                
Query: 446 ggtgt 450
           |||||
Sbjct: 356 ggtgt 360

---

>gb|AF519537.1| Welwitschia mirabilis RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3039

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 222/284 (78%)
 Strand = Plus / Plus

                                                                        
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaa 110
            ||||||| || |||||| ||||||| ||||||||||||||    || || |||||   ||
Sbjct: 2690 tgcctgtgaatctcaagaggcttatttggaatgctcagaaattgtttaaaattgatccaa 2749

                                                                        
Query: 111  gaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaa 170
            ||| | | || || |||||||| ||||||||| | || || || |||||||| || ||||
Sbjct: 2750 gaaaagcatcagatatgcaccccatggaaattattgatgccattgataagcttcaggaaa 2809

                                                                        
Query: 171  gacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactt 230
            |||||||||| ||||| ||  ||||  |  |||| || || || |||||||| |||||| 
Sbjct: 2810 gacttaaggtggtcccaggcaatgacccattgagtatagaggcccagaagaatgctactc 2869

                                                                        
Query: 231  tattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaataca 290
            | |||||||| ||| | |||||||| |||||||| || ||  |||| ||||| |||||| 
Sbjct: 2870 tcttcttcaacatcttacttcgtagtacatttgccagtaaacgggtgttgaaggaatacc 2929

                                                        
Query: 291  ggcttacaaaggaatcttttgaatgggtcattggtgagattgaa 334
              || || || ||| | ||||| ||||| |||||||| ||||||
Sbjct: 2930 acctgactaaagaagcatttgattgggtaattggtgaaattgaa 2973

---

>emb|X56564.1|SPRPB1 S. pombe rpb1 gene for the largest subunit of RNA polymerase II
          Length = 7079

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||| || ||||||||||| |||||||| ||||| || ||||| |||||||| |
Sbjct: 4417 tggctgcacaatctattggagaaccagcaactcaaatgacactcaatacattccattacg 4476

                    
Query: 444  ctggtgtt 451
            ||||||||
Sbjct: 4477 ctggtgtt 4484

---

>emb|AL121795.1|SPBC28F2 S.pombe chromosome II cosmid c28F2
          Length = 39320

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 384   tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
             |||||||||| || ||||||||||| |||||||| ||||| || ||||| |||||||| |
Sbjct: 22400 tggctgcacaatctattggagaaccagcaactcaaatgacactcaatacattccattacg 22459

                     
Query: 444   ctggtgtt 451
             ||||||||
Sbjct: 22460 ctggtgtt 22467

---

>ref|NM_001021568.1| Schizosaccharomyces pombe 972h- DNA-directed RNA polymerase II
            largest subunit (SPBC28F2.12), partial mRNA
          Length = 5259

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||| || ||||||||||| |||||||| ||||| || ||||| |||||||| |
Sbjct: 3209 tggctgcacaatctattggagaaccagcaactcaaatgacactcaatacattccattacg 3268

                    
Query: 444  ctggtgtt 451
            ||||||||
Sbjct: 3269 ctggtgtt 3276

---

>gb|AY490551.1| Taxus canadensis RNA polymerase II large subunit (rpb1) mRNA, partial
            cds
          Length = 3039

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 87/104 (83%)
 Strand = Plus / Plus

                                                                        
Query: 293  cttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtct 352
            |||||||||||| | || ||||||||  ||||||||||||||||  | ||||| ||||||
Sbjct: 2932 cttacaaaggaagcattcgaatgggtagttggtgagattgaatcccgtttccttcagtct 2991

                                                        
Query: 353  ttggtagctcctggtgaaatgattggatgtgtggctgcacagtc 396
             | ||||| || || || |||||||||||||| || ||||||||
Sbjct: 2992 ctagtagccccaggagagatgattggatgtgttgcagcacagtc 3035



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                        
Query: 29   actggcgacaatacatggcctatgcctgtcaacctcaagcggcttatctggaatgctcag 88
            |||||||| ||  |||||||||||||||| || || ||| |||| ||||||||||| |||
Sbjct: 2668 actggcgataactcatggcctatgcctgtaaatctgaagaggctcatctggaatgcccag 2727

                             
Query: 89   aagactttcaagattga 105
            ||||| ||||| |||||
Sbjct: 2728 aagacattcaaaattga 2744

---

>ref|NM_009089.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide A
            (Polr2a), mRNA
          Length = 5799

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||  |||||||||| || ||||||||||| ||||| |||||||| ||||
Sbjct: 3269 tggctgctcagtctcttggagaacctgccactcagatgaccctgaacactttccactatg 3328

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3329 ctggtgt 3335

---

>emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chromosome 11 Contains the
              3' end of the Sat2 gene for spermidine/spermine N1-acetyl
              transferase 2, a ribosomal potein S15A (Rps15a) pseudogene,
              a ubiquitin-like 5 (Ubl5) pseudogene, the Fxr2h gene for
              autosomal homolog of fragile X mental retardation gene 2,
              the Sox15 gene for SRY-box containing gene 15, the Mpdu1
              gene for mannose-P-dolichol utilization defect 1, the Cd68
              gene for CD68 antigen, the Eif4a1 gene for eukaryotic
              translation initiation factor 4A1, the gene for
              sentrin/SUMO-specific protease Smt3ip1, the Tnfsf13 and
              Tnfsf12 genes for tumor necrosis factor (ligand)
              superfamily members 13 and 12, three novel genes, a
              ribosomal protein L13 (Rpl13) pseudogene, the Polr2a gene
              for polymerase (RNA) II (DNA directed) polypeptide A, the
              Amac1 gene for acyl-malonyl condensing enzyme, the gene for
              a novel BTB/POZ domain containing C2H2 type zinc finger
              protein, the Chrnb1 gene for nicotinic cholinergic receptor
              beta polypeptide 1 (muscle), the Fgf11 gene for fibroblast
              growth factor 11, a novel pseudogene, the gene for the
              ortholog of human and rat neuroligin 2 NLGN2, the gene for
              a novel protein of unknown function (DUF423) family member,
              the Plscr3 gene for phospholipid scramblase 3, the 3' end
              of the Tnk1 gene for non-receptor tyrosine kinase 1 and
              nine CpG islands, complete sequence
          Length = 234182

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                          
Query: 384    tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
              ||||||| |||||  |||||||||| || ||||||||||| ||||| |||||||| ||||
Sbjct: 119682 tggctgctcagtctcttggagaacctgccactcagatgaccctgaacactttccactatg 119623

                     
Query: 444    ctggtgt 450
              |||||||
Sbjct: 119622 ctggtgt 119616

---

>gb|AF139014.1| Tanystylum orbiculare RNA polymerase II largest subunit mRNA,
           partial cds
          Length = 769

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                       
Query: 384 tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
           ||||||| |||||  |||||||||| || ||||||||||| ||||| |||||||||||||
Sbjct: 294 tggctgctcagtctcttggagaacctgccactcagatgacactgaacactttccattatg 353

                  
Query: 444 ctggtgt 450
           | |||||
Sbjct: 354 ccggtgt 360

---

>gb|U37500.1|MMU37500 Mus musculus RNA polymerase II largest subunit (RPB1) mRNA, complete
            cds
          Length = 6270

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||  |||||||||| || ||||||||||| ||||| |||||||| ||||
Sbjct: 3338 tggctgctcagtctcttggagaacctgccactcagatgaccctgaacactttccactatg 3397

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3398 ctggtgt 3404

---

>gb|M12130.1|MUSRPOII2 Mouse locus RPII215 polymerase II large subunit gene, exons 2-28
          Length = 15419

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||  |||||||||| || ||||||||||| ||||| |||||||| ||||
Sbjct: 7862 tggctgctcagtctcttggagaacctgccactcagatgaccctgaacactttccactatg 7921

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 7922 ctggtgt 7928

---

>gb|DQ020644.1| Lycopersicon esculentum RNA polymerase II largest subunit (RPB1)
            mRNA, partial cds
          Length = 2319

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                        
Query: 119  tctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaag 178
            ||||||||||| || ||||| || ||||||||  | |||||| | || || || ||||||
Sbjct: 2023 tctgacatgcatccgatggagatcgtggaagctgttgataagttacaggagaggcttaag 2082

                                                                        
Query: 179  gttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttc 238
            ||||| ||||||||||||    | ||||| || ||||| ||||| |||||| | ||||||
Sbjct: 2083 gttgttcctggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttc 2142

                             
Query: 239  aatatcctgcttcgtag 255
            |||||| |||| |||||
Sbjct: 2143 aatatcttgctccgtag 2159



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 371  atgattggatgtgtggctgcacagtccattggagaacc 408
            |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 2275 atgattggctgtgttgctgcacagtctattggtgaacc 2312

---

>gb|AF519542.1| Psilotum nudum RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                        
Query: 77   tggaatgctcagaagactttcaagattgacttaagaagaccttctgacatgcacccaatg 136
            |||||||||||||||| ||||||| | || || |||| |||||| || |||||||| |||
Sbjct: 2716 tggaatgctcagaagattttcaaggtggatttcagaaaaccttcagatatgcaccccatg 2775

                                                                 
Query: 137  gaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtccctgg 189
            || ||||| |||||  | |||||||| || |||||| | || ||||| |||||
Sbjct: 2776 gagattgtagaagcagttgataagctccaggaaagattgaaagttgttcctgg 2828



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 359  gctcctggtgaaatgattggatgtgtggctgc 390
            |||||||| ||||||||||| ||||| |||||
Sbjct: 2998 gctcctggggaaatgattggctgtgttgctgc 3029

---

>ref|XM_501909.1| Yarrowia lipolytica CLIB122, YALI0C16566g predicted mRNA
          Length = 5166

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                        
Query: 386  gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
            ||||| |||||||||||||| || || ||||||||||| ||||| || |||||||| |||
Sbjct: 3127 gctgcccagtccattggagagcccgctactcagatgacactgaacaccttccattacgct 3186

                 
Query: 446  ggtgt 450
            |||||
Sbjct: 3187 ggtgt 3191



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 306  cttttgaatgggtcattggtgagattga 333
            ||||||| |||||||| |||||||||||
Sbjct: 3047 cttttgagtgggtcatgggtgagattga 3074

---

>gb|U90210.1|SSU90210 Spirogyra sp. RNA polymerase II largest subunit (rpb1) gene, partial
            cds
          Length = 2411

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 42   catggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaaga 101
            |||||||| | ||||||||| |||| ||||| ||||||||||| ||||||| ||||||||
Sbjct: 2017 catggcctcttcctgtcaacatcaaacggctgatctggaatgcgcagaagattttcaaga 2076

             
Query: 102  t 102
            |
Sbjct: 2077 t 2077

---

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                           
Query: 386     gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
               ||||| |||||||||||||| || || ||||||||||| ||||| || |||||||| |||
Sbjct: 2337295 gctgcccagtccattggagagcccgctactcagatgacactgaacaccttccattacgct 2337236

                    
Query: 446     ggtgt 450
               |||||
Sbjct: 2337235 ggtgt 2337231



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 306     cttttgaatgggtcattggtgagattga 333
               ||||||| |||||||| |||||||||||
Sbjct: 2337375 cttttgagtgggtcatgggtgagattga 2337348

---

>gb|AY602185.1| Caenorhabditis japonica RNA polymerase 2 gene, partial cds
          Length = 1881

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 386 gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccatta 441
           ||||| |||||  ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 904 gctgctcagtctcttggagaaccggccactcagatgacactgaacactttccatta 959

---

>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6
          Length = 293250

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 411    caactcagatgactctgaatactttccattatgctggtgt 450
              ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 278756 caactcagatgactctgaacactttccactatgctggtgt 278795

---

>ref|XM_636643.1| Dictyostelium discoideum RNA polymerase II core subunit (DDB0215406),
            partial mRNA
          Length = 5184

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||| ||||| || ||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 3257 tggcagcacaatcaattggtgaaccagcaacacaaatgacacttaatactttccattatg 3316

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3317 ctggtgt 3323

---

>ref|XM_511300.1| PREDICTED: Pan troglodytes similar to DNA-directed RNA polymerase II
            largest subunit (RPB1) (LOC454463), mRNA
          Length = 4524

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||| |||||||||| || || ||||||||  ||||||| ||||| ||||
Sbjct: 2576 tggctgcgcagtcccttggagaacctgccacccagatgaccttgaataccttccactatg 2635

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 2636 ctggtgt 2642

---

>ref|XM_853587.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 23
            (LOC479483), mRNA
          Length = 6456

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3669 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3728

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3729 ctggtgt 3735

---

>ref|XM_853549.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 22
            (LOC479483), mRNA
          Length = 6468

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3675 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3734

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3735 ctggtgt 3741

---

>ref|XM_853506.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 21
            (LOC479483), mRNA
          Length = 6480

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3675 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3734

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3735 ctggtgt 3741

---

>ref|XM_853460.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 20
            (LOC479483), mRNA
          Length = 6465

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3576 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3635

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3636 ctggtgt 3642

---

>ref|XM_853428.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 19
            (LOC479483), mRNA
          Length = 6516

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3627 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3686

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3687 ctggtgt 3693

---

>ref|XM_853391.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 18
            (LOC479483), mRNA
          Length = 6285

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3669 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3728

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3729 ctggtgt 3735

---

>ref|XM_853358.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 17
            (LOC479483), mRNA
          Length = 6388

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3639 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3698

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3699 ctggtgt 3705

---

>ref|XM_853318.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 16
            (LOC479483), mRNA
          Length = 6048

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3639 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3698

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3699 ctggtgt 3705

---

>ref|XM_853280.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 15
            (LOC479483), mRNA
          Length = 6564

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3675 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3734

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3735 ctggtgt 3741

---

>ref|XM_853239.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 14
            (LOC479483), mRNA
          Length = 6295

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3588 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3647

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3648 ctggtgt 3654

---

>ref|XM_853200.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 13
            (LOC479483), mRNA
          Length = 5958

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3588 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3647

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3648 ctggtgt 3654

---

>ref|XM_853162.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 12
            (LOC479483), mRNA
          Length = 6558

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3669 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3728

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3729 ctggtgt 3735

---

>ref|XM_853117.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 11
            (LOC479483), mRNA
          Length = 6561

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3672 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3731

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3732 ctggtgt 3738

---

>ref|XM_853080.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 10
            (LOC479483), mRNA
          Length = 6312

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3657 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3716

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3717 ctggtgt 3723

---

>ref|XM_853039.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 9 (LOC479483),
            mRNA
          Length = 6345

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3657 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3716

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3717 ctggtgt 3723

---

>ref|XM_536621.2| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 1 (LOC479483),
            mRNA
          Length = 6628

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3723 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3782

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3783 ctggtgt 3789

---

>ref|XM_852955.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 8 (LOC479483),
            mRNA
          Length = 6493

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3651 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3710

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3711 ctggtgt 3717

---

>ref|XM_852914.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 7 (LOC479483),
            mRNA
          Length = 6366

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3651 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3710

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3711 ctggtgt 3717

---

>ref|XM_852871.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 6 (LOC479483),
            mRNA
          Length = 6637

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3633 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3692

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3693 ctggtgt 3699

---

>ref|XM_852828.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 5 (LOC479483),
            mRNA
          Length = 6415

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3627 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3686

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3687 ctggtgt 3693

---

>ref|XM_852751.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 3 (LOC479483),
            mRNA
          Length = 6700

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3669 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3728

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3729 ctggtgt 3735

---

>ref|XM_843971.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 2 (LOC479483),
            mRNA
          Length = 6558

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| |||||||||| || || ||||||||  ||||||| || || ||||
Sbjct: 3669 tggctgcacagtcccttggagaacctgccacccagatgaccttgaatacctttcactatg 3728

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3729 ctggtgt 3735

---

>gb|AC113189.11| Homo sapiens chromosome 17, clone RP11-104H15, complete sequence
          Length = 184349

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                          
Query: 384    tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
              ||||||| |||||| |||||||||| || || ||||||||  ||||||| ||||| ||||
Sbjct: 158362 tggctgcgcagtcccttggagaacctgccacccagatgaccttgaataccttccactatg 158421

                     
Query: 444    ctggtgt 450
              |||||||
Sbjct: 158422 ctggtgt 158428

---

>emb|X63564.1|HSRPIILS H.sapiens mRNA for RNA polymerase II largest subunit
          Length = 6732

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||| |||||||||| || || ||||||||  ||||||| ||||| ||||
Sbjct: 3655 tggctgcgcagtcccttggagaacctgccacccagatgaccttgaataccttccactatg 3714

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3715 ctggtgt 3721

---

>gb|S52651.1| RNA polymerase II largest subunit [Dictyostelium discoideum, mRNA
           Partial, 2874 nt]
          Length = 2874

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 384 tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
           |||| ||||| || ||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 782 tggcagcacaatcaattggtgaaccagcaacacaaatgacacttaatactttccattatg 841

                  
Query: 444 ctggtgt 450
           |||||||
Sbjct: 842 ctggtgt 848

---

>ref|NM_000937.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            (POLR2A), mRNA
          Length = 6732

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||| |||||||||| || || ||||||||  ||||||| ||||| ||||
Sbjct: 3655 tggctgcgcagtcccttggagaacctgccacccagatgaccttgaataccttccactatg 3714

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3715 ctggtgt 3721

---

>emb|X74871.1|HSRPII04 H.sapiens gene for RNA pol II largest subunit, exons 20-22
          Length = 2443

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 384 tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
           ||||||| |||||| |||||||||| || || ||||||||  ||||||| ||||| ||||
Sbjct: 158 tggctgcgcagtcccttggagaacctgccacccagatgaccttgaataccttccactatg 217

                  
Query: 444 ctggtgt 450
           |||||||
Sbjct: 218 ctggtgt 224

---

>gb|AY601778.1|AY601778S1 Oscheius myriophila strain DF5020 RNA polymerase 2 gene, partial cds
          Length = 3529

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                      
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccatta 441
            ||||||| |||||| | |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 2265 tggctgcccagtccctcggagaacccgccactcagatgacactgaacactttccatta 2322

---

>gb|AY602183.1| Rhabditella axei RNA polymerase 2 gene, partial cds
          Length = 2484

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                        
Query: 362  cctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatg 421
            |||||||||||| | |||  | ||||||| |||||  |||||||||| || |||||||||
Sbjct: 1146 cctggtgaaatggtcggagctttggctgctcagtctcttggagaacctgccactcagatg 1205

                                      
Query: 422  actctgaatactttccattatgctgg 447
            ||  |||| |||||||||| ||||||
Sbjct: 1206 acattgaacactttccattttgctgg 1231

---

>gb|AY604469.1| Prodontorhabditis wirthi strain DF5074 RNA polymerase 2 gene, partial
            cds
          Length = 2373

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                          
Query: 399  ttggagaaccggcaactcagatgactctgaatactttccattatgc 444
            |||||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 1167 ttggagaacctgctactcagatgacactgaacactttccattatgc 1212

---

>gb|AE010257.1| Pyrococcus furiosus DSM 3638, section 132 of 173 of the complete
            genome
          Length = 14506

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 386  gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
            ||||| ||||| |||||||||||  |||| ||||||||||| || |||||||| ||||| 
Sbjct: 2888 gctgcccagtctattggagaaccttcaacccagatgactctcaacactttccactatgca 2829

                  
Query: 446  ggtgtt 451
            ||||||
Sbjct: 2828 ggtgtt 2823

---

>gb|AF241041.1|AF241040S2 Solifugid 'Sol' RNA polymerase II largest subunit mRNA, partial cds
          Length = 769

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 401 ggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
           ||||||||||| ||||||||||| ||||| |||||||| || ||||||||
Sbjct: 311 ggagaaccggccactcagatgacactgaacactttccactacgctggtgt 360

---

>gb|U73456.1|TPU73456 Teratorhabditis palmarum large subunit RNA polymerase II mRNA,
           partial cds
          Length = 1893

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 389 gcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggt 448
           ||||||||  |||||||||| |||||||| ||||| ||||||||||| || | |||||||
Sbjct: 889 gcacagtctcttggagaacctgcaactcaaatgacactgaatacttttcactttgctggt 948

             
Query: 449 gt 450
           ||
Sbjct: 949 gt 950

---

>ref|XM_456921.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A14036g)
            partial mRNA
          Length = 5250

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                     
Query: 395  tccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgtt 451
            ||||| || ||||| || ||||| |||||  ||||||||||||||||||||||||||
Sbjct: 3229 tccatcggtgaaccagccactcaaatgaccttgaatactttccattatgctggtgtt 3285

---

>ref|XM_381092.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00916.1)
            partial mRNA
          Length = 5277

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                        
Query: 362  cctggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatg 421
            |||||||||||| ||||   | ||||||| ||||||||||| || || || |||||||||
Sbjct: 3226 cctggtgaaatggttggtgttttggctgcccagtccattggtgagcctgccactcagatg 3285

                                         
Query: 422  actctgaatactttccattatgctggtgt 450
            || ||||| || |||||||  ||||||||
Sbjct: 3286 acactgaacaccttccatttcgctggtgt 3314

---

>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
               hansenii
          Length = 1249565

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 395     tccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgtt 451
               ||||| || ||||| || ||||| |||||  ||||||||||||||||||||||||||
Sbjct: 1141784 tccatcggtgaaccagccactcaaatgaccttgaatactttccattatgctggtgtt 1141728

---

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                           
Query: 386     gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
               ||||| ||||| |||||||| || || || ||||||||||| || |||||||||| ||||
Sbjct: 1317744 gctgcccagtctattggagagccagctacgcagatgactctaaacactttccattttgct 1317803

                    
Query: 446     ggtgt 450
               |||||
Sbjct: 1317804 ggtgt 1317808

---

>gb|AF315819.1|AF315819 Botryocladia uvarioides DNA-dependent RNA polymerase II largest
            subunit RPB1 (RPB1) gene, partial cds
          Length = 5136

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 386  gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
            ||||| |||||||||||||| || ||||| || ||||| ||||| || |||||||| |||
Sbjct: 3037 gctgcgcagtccattggagagcccgcaacgcaaatgacgctgaacacattccattacgct 3096

                 
Query: 446  ggtgt 450
            |||||
Sbjct: 3097 ggtgt 3101

---

>dbj|AB017184.1| Aspergillus oryzae gene for RNA polymerase II largest subunit,
            complete cds
          Length = 6360

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 386  gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
            ||||| ||||| |||||||| || || || ||||||||||| || |||||||||| ||||
Sbjct: 3849 gctgcccagtctattggagagccagctacgcagatgactctaaacactttccattttgct 3908

                 
Query: 446  ggtgt 450
            |||||
Sbjct: 3909 ggtgt 3913

---

>gb|AY602186.1| Caenorhabditis plicata RNA polymerase 2 gene, partial cds
          Length = 2117

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 399  ttggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
            |||||||||| || |||||||||||  ||||||||||||| || ||||||||
Sbjct: 1039 ttggagaaccagccactcagatgacattgaatactttccactacgctggtgt 1090

---

>ref|XM_749096.1| Aspergillus fumigatus Af293 DNA-directed RNA polymerase III largest
            subunit (Afu3g14370) partial mRNA
          Length = 4362

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                        
Query: 388  tgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgctgg 447
            ||||||||| ||||| ||||||| ||||||||||||  |||| || ||||| | ||||||
Sbjct: 3222 tgcacagtcaattggcgaaccgggaactcagatgaccttgaagaccttccactttgctgg 3281

                
Query: 448  tgtt 451
            ||||
Sbjct: 3282 tgtt 3285

---

>emb|AL035570.1|SPBC651 S.pombe chromosome II cosmid c651
          Length = 25350

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 392   cagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgtt 451
             ||||||||||| || || |  |||||||||||||| || |||||||||| ||||||||||
Sbjct: 13354 cagtccattggtgagcctggtactcagatgactcttaaaactttccattttgctggtgtt 13295

---

>emb|AJ719836.1| Gallus gallus mRNA for hypothetical protein, clone 7b9
          Length = 4261

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 416  cagatgactctgaatactttccattatgctggtgtt 451
            |||||||||||||| |||||||||| ||||||||||
Sbjct: 3190 cagatgactctgaagactttccattttgctggtgtt 3225

---

>ref|NM_001006500.1| Gallus gallus polymerase (RNA) III (DNA directed) polypeptide A,
            155kDa (POLR3A), mRNA
          Length = 4261

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 416  cagatgactctgaatactttccattatgctggtgtt 451
            |||||||||||||| |||||||||| ||||||||||
Sbjct: 3190 cagatgactctgaagactttccattttgctggtgtt 3225

---

>ref|NM_001021416.1| Schizosaccharomyces pombe 972h- DNA-directed RNA polymerase III
            protein (SPBC651.08c), partial mRNA
          Length = 4218

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 392  cagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgtt 451
            ||||||||||| || || |  |||||||||||||| || |||||||||| ||||||||||
Sbjct: 3157 cagtccattggtgagcctggtactcagatgactcttaaaactttccattttgctggtgtt 3216

---

>gb|AY490552.1| Podocarpus macrophyllus RNA polymerase II large subunit (rpb1) mRNA,
            partial cds
          Length = 3039

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                        
Query: 293  cttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtct 352
            ||||| |||||| | ||||| |||||  ||||||| ||||||||  | ||||||||||| 
Sbjct: 2932 cttactaaggaagcatttgagtgggtagttggtgaaattgaatctcgtttcctccagtcc 2991

                                            
Query: 353  ttggtagctcctggtgaaatgattggatgtgt 384
            |||||||| || || || |||||||| |||||
Sbjct: 2992 ttggtagccccaggggagatgattggctgtgt 3023



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 117/144 (81%), Gaps = 2/144 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   cctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattga- 105
            ||||||||||| ||||| ||| |||| ||||||||||| || || || ||||||||||| 
Sbjct: 2686 cctatgcctgtaaacctgaagaggctaatctggaatgcccaaaaaacattcaagattgat 2745

                                                                        
Query: 106  cttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgca 165
            | || ||| ||| || || ||||| |||||||| ||||| ||||| || || |  || ||
Sbjct: 2746 cctaggaa-accatcagatatgcatccaatggagattgtagaagcaattgacagacttca 2804

                                    
Query: 166  agaaagacttaaggttgtccctgg 189
             ||||| ||||||||||| |||||
Sbjct: 2805 ggaaaggcttaaggttgttcctgg 2828

---

>gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, partial sequence
          Length = 140590

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 395    tccattggagaaccggcaactcagatgactctgaatactttccatta 441
              ||||| ||||||||  |||||||||||||  ||||||||||||||||
Sbjct: 109042 tccatcggagaacctacaactcagatgaccttgaatactttccatta 109088

---

>gb|DQ223185.1| Glaucocystis nostochinearum strain UTEX-B 1929 DNA-dependent RNA
            polymerase II largest subunit (RPB1) gene, complete cds
          Length = 9936

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 392  cagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
            |||||||| ||||| || || || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 7511 cagtccatcggagagcctgccacgcagatgactctcaataccttccattacgctggtgt 7569

---

>ref|XM_637632.1| Dictyostelium discoideum RNA polymerase III, largest subunit
            (DDB0216293), partial mRNA
          Length = 4353

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 413  actcagatgactctgaatactttccattatgctggtgt 450
            |||||||||||| |||| |||||||||| |||||||||
Sbjct: 3346 actcagatgactttgaaaactttccattttgctggtgt 3383

---

>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4,
              complete sequence
          Length = 302156

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 413    actcagatgactctgaatactttccattatgctggtgt 450
              |||||||||||| |||| |||||||||| |||||||||
Sbjct: 123152 actcagatgactttgaaaactttccattttgctggtgt 123189

---

>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 386    gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccat 439
              ||||| ||||||||||||||||||| ||| ||| ||||| |||  |||||||||
Sbjct: 309668 gctgcccagtccattggagaaccgggaacccagttgactatgagaactttccat 309721

---

>gb|U61763.1|ZPU61763 Zeldia punctata RNA polymerase II large subunit mRNA, partial cds
          Length = 1889

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 401 ggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
           |||||||| || |||||||||||  ||||||||||||| || ||||||||
Sbjct: 894 ggagaaccagctactcagatgacattgaatactttccactacgctggtgt 943

---

>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                           
Query: 386     gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
               ||||| ||||| ||||| ||||| || ||||||||||| || || || ||||||||||| 
Sbjct: 1061027 gctgctcagtctattggtgaacctgccactcagatgacactcaacacgttccattatgcg 1061086

                    
Query: 446     ggtgt 450
               |||||
Sbjct: 1061087 ggtgt 1061091

---

>gb|AY602189.1| Caenorhabditis sp. DF5070 RNA polymerase 2 gene, partial cds
          Length = 1957

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 399 ttggagaaccggcaactcagatgactctgaatactttccattatgctgg 447
           ||||||||||||| || || |||||  |||| |||||||||||||||||
Sbjct: 949 ttggagaaccggctacgcaaatgacattgaacactttccattatgctgg 997

---

>ref|XM_714321.1| Candida albicans SC5314 RNA polymerase II large subunit (CaO19_7655),
            mRNA
          Length = 5187

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 426  tgaatactttccattatgctggtgt 450
            |||||||||||||||||||||||||
Sbjct: 3245 tgaatactttccattatgctggtgt 3269

---

>ref|XM_653321.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0809.2), mRNA
          Length = 5238

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 392  cagtccattggagaaccggcaactcagatgactctgaatactttccatt 440
            ||||| ||||| |||||||| |||||||||||  |||| ||||||||||
Sbjct: 3268 cagtcaattggtgaaccggccactcagatgacattgaacactttccatt 3316

---

>ref|XM_570943.1| Cryptococcus neoformans var. neoformans JEC21 DNA-directed RNA
            polymerase ii largest subunit (CNE03720) partial mRNA
          Length = 5912

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 386  gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
            ||||| ||||| ||||| ||||| || ||||||||||| || || || ||||||||||| 
Sbjct: 3575 gctgctcagtctattggtgaacctgccactcagatgacactcaacacgttccattatgcg 3634

                 
Query: 446  ggtgt 450
            |||||
Sbjct: 3635 ggtgt 3639

---

>gb|AY305605.1| Podura aquatica clone PaqBpol RNA polymerase II largest subunit
           mRNA, partial cds
          Length = 919

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 306 cttttgaatgggtcattggtgagattga 333
           ||||||||||| ||||||||||||||||
Sbjct: 216 cttttgaatggctcattggtgagattga 243

---

>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                           
Query: 387     ctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgctg 446
               |||||||||||||||| ||||| |  |||||||||||  ||  ||||||||| || ||||
Sbjct: 1264576 ctgcacagtccattggtgaacctggcactcagatgaccatgcgtactttccactacgctg 1264517

                   
Query: 447     gtgt 450
               ||||
Sbjct: 1264516 gtgt 1264513

---

>gb|AY601776.1|AY601775S2 Caenorhabditis sp. CB5161 RNA polymerase 2 gene, partial cds
          Length = 1214

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 74  atctggaatgctcagaagactttcaag 100
           ||||||||||||||||||| |||||||
Sbjct: 267 atctggaatgctcagaagattttcaag 293



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 413 actcagatgactctgaatactttccattatgctggtgt 450
           ||||| ||||| ||||| || |||||||||||||||||
Sbjct: 606 actcaaatgaccctgaacaccttccattatgctggtgt 643

---

>gb|AY601773.1|AY601772S2 Caenorhabditis sp. PS1010 RNA polymersae 2 gene, partial cds
          Length = 2580

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 401 ggagaaccggcaactcagatgactctgaatactttccattatgctgg 447
           ||||||||||| || || |||||  |||| |||||||||||||||||
Sbjct: 856 ggagaaccggccacacaaatgacgttgaacactttccattatgctgg 902

---

>ref|XM_876181.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide
            A (220kD), transcript variant 4 (POLR2A), mRNA
          Length = 6411

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| | |||||||| || || ||||||||  |||| || || || ||||
Sbjct: 3406 tggctgcacagtccctcggagaacctgccacccagatgaccttgaacacctttcactatg 3465

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3466 ctggtgt 3472

---

>ref|XM_876122.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide
            A (220kD), transcript variant 3 (POLR2A), mRNA
          Length = 6090

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| | |||||||| || || ||||||||  |||| || || || ||||
Sbjct: 3406 tggctgcacagtccctcggagaacctgccacccagatgaccttgaacacctttcactatg 3465

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3466 ctggtgt 3472

---

>ref|XM_876055.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide
            A (220kD), transcript variant 2 (POLR2A), mRNA
          Length = 5974

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| | |||||||| || || ||||||||  |||| || || || ||||
Sbjct: 3158 tggctgcacagtccctcggagaacctgccacccagatgaccttgaacacctttcactatg 3217

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3218 ctggtgt 3224

---

>ref|XM_596010.2| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide
            A (220kD), transcript variant 1 (POLR2A), mRNA
          Length = 6405

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            |||||||||||||| | |||||||| || || ||||||||  |||| || || || ||||
Sbjct: 3406 tggctgcacagtccctcggagaacctgccacccagatgaccttgaacacctttcactatg 3465

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3466 ctggtgt 3472

---

>ref|XM_655024.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2512.2), mRNA
          Length = 6279

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 392  cagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
            |||||||||||||| ||||  || || ||||| ||||| |||||||| | |||||||||
Sbjct: 5167 cagtccattggagagccgggtacgcaaatgacactgaagactttccactttgctggtgt 5225

---

>ref|XM_455310.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F05071g predicted mRNA
          Length = 5163

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| || ||||| || || || || |||||||||||  |||||||||||||||  |
Sbjct: 3200 tggctgctcaatccatcggtgagcctgccactcagatgacattgaatactttccatttcg 3259

                   
Query: 444  ctggtgt 450
            |||||||
Sbjct: 3260 ctggtgt 3266

---

>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 387    ctgcacagtccattggagaaccggcaactcagatg 421
              ||||||| ||| |||||||||| ||||||||||||
Sbjct: 377367 ctgcacaatcctttggagaacctgcaactcagatg 377333

---

>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2602197

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                          
Query: 384    tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
              ||||||| || ||||| || || || || |||||||||||  |||||||||||||||  |
Sbjct: 498334 tggctgctcaatccatcggtgagcctgccactcagatgacattgaatactttccatttcg 498275

                     
Query: 444    ctggtgt 450
              |||||||
Sbjct: 498274 ctggtgt 498268

---

>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 392     cagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
               ||||| ||||| ||||| |  |||||||||||  |||| |||||||||| |||||||||
Sbjct: 1597234 cagtctattggtgaacccggtactcagatgaccttgaagactttccattttgctggtgt 1597176

---

>gb|U73448.1|UNU73448 Unidentified nematode large subunit RNA polymerase II mRNA, partial
           cds
          Length = 1899

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 401 ggagaaccggcaactcagatgactctgaatactttccattatgctgg 447
           ||||||||||| || || |||||  |||| |||||||||||||||||
Sbjct: 901 ggagaaccggccacacaaatgacattgaacactttccattatgctgg 947

---

>gb|AY490554.1| Ephedra viridis RNA polymerase II large subunit (rpb1) mRNA, partial
            cds
          Length = 3039

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 158  aagctgcaagaaagacttaaggttgtccctggtgatgat 196
            ||||| ||||| ||||| |||||||| ||||||||||||
Sbjct: 2797 aagcttcaagagagactaaaggttgttcctggtgatgat 2835

---

>gb|U10338.1|IOU10338 Ilyanassa obsoleta RNA polymerase II largest subunit mRNA, partial
            cds
          Length = 4029

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 416  cagatgactctgaatactttccattatgctggtgt 450
            |||||||| ||||| ||||||||||| ||||||||
Sbjct: 3043 cagatgacactgaacactttccattacgctggtgt 3077

---

>ref|XM_638427.1| Dictyostelium discoideum RNA polymerase I, largest subunit
            (DDB0216292), partial mRNA
          Length = 4848

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 395  tccattggagaaccggcaactcagatgactctgaatactttccatt 440
            |||||||| |||||  ||||||| |||||| | |||||||||||||
Sbjct: 3439 tccattggtgaaccatcaactcaaatgactttaaatactttccatt 3484

---

>gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete sequence
          Length = 162638

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 413    actcagatgactctgaatactttccattatgctggtgt 450
              ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 101799 actcagatgacactgaacaccttccattttgctggtgt 101836

---

>gb|AY305548.1| Armadillidium vulgare clone Avu2Apol RNA polymerase II largest
            subunit mRNA, partial cds
          Length = 2209

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 413  actcagatgactctgaatactttccattatgctggtgt 450
            |||||||||||  |||| |||||||||| |||||||||
Sbjct: 1679 actcagatgacattgaacactttccattttgctggtgt 1716

---

>ref|XM_705669.1| Candida albicans SC5314 RNA polymerase I largest subunit
            (CaO19.9397), mRNA
          Length = 4998

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 395  tccattggagaaccggcaactcagatgactctgaatactttccattatgctggt 448
            |||||||| |||||  |||| || |||||  ||||||||||||||| |||||||
Sbjct: 3541 tccattggtgaaccatcaacacaaatgacgttgaatactttccattttgctggt 3594

---

>ref|XM_705631.1| Candida albicans SC5314 RNA polymerase I largest subunit
            (CaO19.1839), mRNA
          Length = 4998

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 395  tccattggagaaccggcaactcagatgactctgaatactttccattatgctggt 448
            |||||||| |||||  |||| || |||||  ||||||||||||||| |||||||
Sbjct: 3541 tccattggtgaaccatcaacacaaatgacgttgaatactttccattttgctggt 3594

---

>ref|XM_660493.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase
           (Chro.50318) partial mRNA
          Length = 897

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 398 attggagaaccggcaactcagatgactctgaatacttt 435
           |||||||||||||| || || |||||||| ||||||||
Sbjct: 304 attggagaaccggccacacaaatgactcttaatacttt 341

---

>ref|XM_661065.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase (EC
            2.7.7.6) II largest chain (Chro.30301) partial mRNA
          Length = 5688

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 389  gcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggt 448
            |||||||| ||||||||||| ||||| || |||||  | ||||| ||||| | |||||||
Sbjct: 3349 gcacagtcaattggagaacctgcaacgcaaatgacattaaataccttccactttgctggt 3408

              
Query: 449  gt 450
            ||
Sbjct: 3409 gt 3410

---

>gb|DQ083406.1| Nosema plutellae isolate PX2 DNA-dependent RNA polymerase II largest
            subunit gene, partial cds
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 401  ggagaaccggcaactcagatgactctgaatactttcca 438
            |||||||| || ||||||||||| || |||||||||||
Sbjct: 1292 ggagaacctgctactcagatgaccctaaatactttcca 1329

---

>gb|DQ167785.1| Drosophila teissieri putative RNA polymerase II 215 kD subunit
           (RpII215) gene, exons 3, 4 and partial cds
          Length = 2441

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 413 actcagatgactctgaatactttccattatgctggtgt 450
           ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 702 actcagatgacactgaacaccttccattttgctggtgt 739

---

>gb|DQ167784.1| Drosophila simulans putative RNA polymerase II 215 kD subunit
           (RpII215) gene, exons 3, 4 and partial cds
          Length = 2367

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 413 actcagatgactctgaatactttccattatgctggtgt 450
           ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 702 actcagatgacactgaacaccttccattttgctggtgt 739

---

>gb|DQ167783.1| Drosophila orena putative RNA polymerase II 215 kD subunit
           (RpII215) gene, exons 3, 4 and partial cds
          Length = 2387

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 413 actcagatgactctgaatactttccattatgctggtgt 450
           ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 702 actcagatgacactgaacaccttccattttgctggtgt 739

---

>gb|DQ167782.1| Drosophila erecta putative RNA polymerase II 215 kD subunit
           (RpII215) gene, exons 3, 4 and partial cds
          Length = 2414

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 413 actcagatgactctgaatactttccattatgctggtgt 450
           ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 702 actcagatgacactgaacaccttccattttgctggtgt 739

---

>gb|AF395110.1| Naegleria gruberi RNA polymerase II largest subunit (RPB1) gene,
            partial cds
          Length = 4790

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 365  ggtgaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgact 424
            ||||||||| | || | ||| ||||| || || ||||| ||||| || ||||| ||||||
Sbjct: 3079 ggtgaaatggtcggttctgttgctgcccaatctattggtgaacctgctactcaaatgact 3138

                          
Query: 425  ctgaatactttcca 438
             |||||||||||||
Sbjct: 3139 ttgaatactttcca 3152

---

>ref|NM_078569.2| Drosophila melanogaster RNA polymerase II 215kD subunit CG1554-RA
            (RpII215), mRNA
          Length = 6759

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 413  actcagatgactctgaatactttccattatgctggtgt 450
            ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 3630 actcagatgacactgaacaccttccattttgctggtgt 3667

---

>gb|AY089555.1| Drosophila melanogaster LD43558 full insert cDNA
          Length = 5114

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 413  actcagatgactctgaatactttccattatgctggtgt 450
            ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 1973 actcagatgacactgaacaccttccattttgctggtgt 2010

---

>ref|XM_626822.1| Cryptosporidium parvum Iowa II putative DNA-directed RNA
            polymerase,putative RNA polymerase A/beta'/A'' subunit,
            long PHYSPTS repeat at C-terminus (cgd3_2620), partial
            mRNA
          Length = 5709

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 389  gcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggt 448
            |||||||| ||||||||||| ||||| || |||||  | ||||| ||||| | |||||||
Sbjct: 3370 gcacagtcaattggagaacctgcaacgcaaatgacattaaataccttccactttgctggt 3429

              
Query: 449  gt 450
            ||
Sbjct: 3430 gt 3431

---

>gb|DQ223186.1| Cyanophora paradoxa strain CCAC 0074 DNA-dependent RNA polymerase II
            largest subunit (RPB1) mRNA, partial cds
          Length = 3000

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaaga 92
            |||| |||||||||||||| || |||||||| || |||||||
Sbjct: 2630 tgcccgtcaacctcaagcgcctcatctggaacgcccagaaga 2671

---

>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete
               sequence
          Length = 1519138

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 413     actcagatgactctgaatactttccattatgctggtgt 450
               |||||||||||  |||| |||||||||| |||||||||
Sbjct: 1102422 actcagatgaccttgaagactttccattttgctggtgt 1102385

---

>gb|AF315820.1|AF315820 Glaucosphaera vacuolata DNA-dependent RNA polymerase II largest
            subunit RPB1 (RPB1) gene, complete cds
          Length = 5773

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 397  cattggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
            |||||| || || |||||||||||||| ||||| || ||||||| ||| |||||
Sbjct: 3709 cattggtgagcctgcaactcagatgacgctgaacacgttccattttgccggtgt 3762

---

>gb|AF138970.1| Armadillidium vulgare RNA polymerase II largest subunit mRNA,
           partial cds
          Length = 1300

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 413 actcagatgactctgaatactttccattatgctggtgt 450
           |||||||||||  |||| |||||||||| |||||||||
Sbjct: 770 actcagatgacattgaacactttccattttgctggtgt 807

---

>gb|AC153817.6| Mus musculus  BAC RP23-11P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 247508

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 92     actttcaagattgacttaagaa 113
              ||||||||||||||||||||||
Sbjct: 114646 actttcaagattgacttaagaa 114625

---

>gb|AC115598.2| Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4,
              complete sequence
          Length = 154071

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 395    tccattggagaaccggcaactcagatgactctgaatactttccatt 440
              |||||||| |||||  ||||||| |||||| | |||||||||||||
Sbjct: 117064 tccattggtgaaccatcaactcaaatgactttaaatactttccatt 117019

---

>ref|NM_210463.1| Eremothecium gossypii AER252Cp (AER252C), mRNA
          Length = 4380

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 413  actcagatgactctgaatactttccattatgctggtgt 450
            |||||||||||  |||| |||||||||| |||||||||
Sbjct: 3301 actcagatgaccttgaagactttccattttgctggtgt 3338

---

>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete
              sequence
          Length = 328128

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 413    actcagatgactctgaatactttccattatgctggtgt 450
              ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 196494 actcagatgacactgaacaccttccattttgctggtgt 196457

---

>gb|U10334.1|CGU10334 Crassostrea gigas RNA polymerase II largest subunit mRNA, partial cds
          Length = 4020

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 401  ggagaaccggcaactcagatgactctgaatactttccattatgctggtgt 450
            |||||||| || || ||||||||  | || ||||||||||||||||||||
Sbjct: 3019 ggagaacctgccacacagatgacattaaacactttccattatgctggtgt 3068

---

>gb|M27431.1|DRORPRIIA D.melanogaster RpII215 gene encoding RNA polymerase II, largest
            subunit, complete cds
          Length = 8571

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 413  actcagatgactctgaatactttccattatgctggtgt 450
            ||||||||||| ||||| || ||||||| |||||||||
Sbjct: 5089 actcagatgacactgaacaccttccattttgctggtgt 5126

---

>gb|AY601771.1|AY601770S2 Caenorhabditis remanei strain SB146 RNA polymerase 2 gene, partial
            cds
          Length = 1964

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                        
Query: 384  tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatg 443
            ||||||| |||||  | ||||| || || |||||||||||  ||||||| ||||||||||
Sbjct: 975  tggctgctcagtcactcggagagcccgccactcagatgacattgaatacgttccattatg 1034

             
Query: 444  c 444
            |
Sbjct: 1035 c 1035

---

>gb|AY305645.1| Peripatus sp. Per2 RNA polymerase II largest subunit mRNA, partial
           cds
          Length = 901

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 386 gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
           |||||||||||  | || ||||| || ||||| |||||  |||||||||| || ||||||
Sbjct: 296 gctgcacagtctttaggtgaacccgctactcaaatgacattgaatacttttcactatgct 355

                
Query: 446 ggtgt 450
           |||||
Sbjct: 356 ggtgt 360

---

>gb|AC121267.17| Mus musculus chromosome 19, clone RP24-444E1, complete sequence
          Length = 160720

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   gaaatgattggatgtgtggct 388
             |||||||||||||||||||||
Sbjct: 49459 gaaatgattggatgtgtggct 49439

---

>ref|XM_505388.1| Yarrowia lipolytica CLIB122, YALI0F13783g predicted mRNA
          Length = 4887

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 392  cagtccattggagaaccggcaactcagatgactctgaatactttccatt 440
            ||||||||||| || ||  | |||||||||||||| || ||||||||||
Sbjct: 3481 cagtccattggtgagccttccactcagatgactcttaacactttccatt 3529

---

>emb|AL161655.8| Human DNA sequence from clone RP11-116E13 on chromosome 20 Contains
             part of a novel gene, GSSs and STSs, complete sequence
          Length = 105191

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   aaatgattggatgtgtggctg 389
             |||||||||||||||||||||
Sbjct: 50291 aaatgattggatgtgtggctg 50311

---

>ref|XM_783160.1| PREDICTED: Strongylocentrotus purpuratus similar to RNA polymerase
            1-4 (LOC583240), mRNA
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                     
Query: 392  cagtccattggagaaccggcaactcagatgactctgaatactttccattatgctggt 448
            ||||| |||||||| ||  |||||||||||||  ||||||| || |||| |||||||
Sbjct: 2002 cagtcgattggagagccttcaactcagatgacattgaatacgtttcattttgctggt 2058

---

>gb|AF240892.1| Peripatus sp. 'Per2' RNA polymerase II largest subunit mRNA,
           partial cds
          Length = 901

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 386 gctgcacagtccattggagaaccggcaactcagatgactctgaatactttccattatgct 445
           |||||||||||  | || ||||| || ||||| |||||  |||||||||| || ||||||
Sbjct: 296 gctgcacagtctttaggtgaacccgctactcaaatgacattgaatacttttcactatgct 355

                
Query: 446 ggtgt 450
           |||||
Sbjct: 356 ggtgt 360

---

>gb|U73454.1|MSU73454 Mesorhabditis sp. large subunit RNA polymerase II mRNA, partial cds
          Length = 1899

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 384 tggctgcacagtccattggagaaccggcaactcagatgactctgaatactttccatt 440
           |||| ||||||||  | ||||||||||| || || ||||| || |||||||||||||
Sbjct: 884 tggcagcacagtctttgggagaaccggccacacaaatgaccctcaatactttccatt 940

---

>gb|AC112967.14| Mus musculus chromosome 19, clone RP24-151O21, complete sequence
          Length = 167743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    gaaatgattggatgtgtggct 388
              |||||||||||||||||||||
Sbjct: 147752 gaaatgattggatgtgtggct 147732

---

>gb|AC162372.5| Mus musculus chromosome 19, clone RP23-177G18, complete sequence
          Length = 178801

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    gaaatgattggatgtgtggct 388
              |||||||||||||||||||||
Sbjct: 170202 gaaatgattggatgtgtggct 170222

---

>gb|DQ294584.1| Polychytrium aggregatum isolate AFTOL-ID-24 RNA polymerase II largest
            subunit (RPB1) gene, partial cds
          Length = 3389

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 56   gtcaacctcaagcggcttatctggaatgc 84
            |||||||||||||| || |||||||||||
Sbjct: 3045 gtcaacctcaagcgactgatctggaatgc 3073

---

>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                
Query: 392     cagtccattggagaaccggcaactcagatgactctgaatactttccatt 440
               ||||||||||| || ||  | |||||||||||||| || ||||||||||
Sbjct: 1854172 cagtccattggtgagccttccactcagatgactcttaacactttccatt 1854124

---

>ref|NM_017131.2| Rattus norvegicus calsequestrin 2 (Casq2), mRNA
          Length = 2478

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1108 agaagactttcaagattgac 1127

---

>ref|XM_513677.1| PREDICTED: Pan troglodytes similar to Calsequestrin, cardiac muscle
            isoform precursor (Calsequestrin 2) (LOC457150), mRNA
          Length = 1582

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1157 agaagactttcaagattgac 1176

---

>ref|NM_001232.1| Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2), mRNA
          Length = 2528

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1065 agaagactttcaagattgac 1084

---

>ref|XM_423690.1| PREDICTED: Gallus gallus similar to DNA-directed RNA polymerase I
           largest subunit (RNA polymerase I 194 kDa subunit)
           (RPA194) (LOC426011), partial mRNA
          Length = 544

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 416 cagatgactctgaatactttccattatgctgg 447
           |||||||||||||| || ||||||| ||||||
Sbjct: 316 cagatgactctgaacaccttccattttgctgg 347

---

>ref|XM_872588.1| PREDICTED: Bos taurus similar to calcyphosine-like, transcript
           variant 6 (LOC507306), mRNA
          Length = 1273

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 attatgctggtgttagtgct 457
           ||||||||||||||||||||
Sbjct: 723 attatgctggtgttagtgct 742

---

>ref|XM_872393.1| PREDICTED: Bos taurus similar to calcyphosine-like, transcript
           variant 4 (LOC507306), mRNA
          Length = 1259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 attatgctggtgttagtgct 457
           ||||||||||||||||||||
Sbjct: 709 attatgctggtgttagtgct 728

---

>ref|XM_872294.1| PREDICTED: Bos taurus similar to calcyphosine-like, transcript
           variant 3 (LOC507306), mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 attatgctggtgttagtgct 457
           ||||||||||||||||||||
Sbjct: 704 attatgctggtgttagtgct 723

---

>ref|XM_420851.1| PREDICTED: Gallus gallus similar to RNA polymerase 1-4; RNA
            polymerase I (194 kDa subunit) (LOC422910), mRNA
          Length = 5328

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 416  cagatgactctgaatactttccattatgctgg 447
            |||||||||||||| || ||||||| ||||||
Sbjct: 3340 cagatgactctgaacaccttccattttgctgg 3371

---

>gb|AC145898.4| Pan troglodytes BAC clone RP43-9D19 from 7, complete sequence
          Length = 156789

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    agcggcttatctggaatgct 85
             ||||||||||||||||||||
Sbjct: 35604 agcggcttatctggaatgct 35585

---

>gb|AC147153.2| Mus musculus chromosome y clone RP24-373C15, complete sequence
          Length = 147194

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   agatgactctgaatactttc 436
             ||||||||||||||||||||
Sbjct: 71045 agatgactctgaatactttc 71064

---

>ref|XM_761237.1| Theileria parva strain Muguga chromosome 1 RNA polymerase large
            subunit (TP01_0809) partial mRNA
          Length = 5991

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 392  cagtccattggagaaccggcaactcagatgac 423
            ||||| ||||||||||| |||||||| |||||
Sbjct: 4210 cagtcaattggagaaccagcaactcaaatgac 4241

---

>emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chromosome 1 Contains the
             VANGL1 gene for vang-like 1 (van gogh, Drosophila), the 3'
             end of the CASQ2 gene for calsequestrin 2 (cardiac muscle)
             and one CpG island, complete sequence
          Length = 101623

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agaagactttcaagattgac 106
             ||||||||||||||||||||
Sbjct: 66403 agaagactttcaagattgac 66384

---

>emb|AL391005.9| Human DNA sequence from clone RP11-288A5 on chromosome 10 Contains a
             forkhead box I1 (FOXI1) pseudogene and a CpG island,
             complete sequence
          Length = 163778

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gcaagaaagacttaaggttg 182
             ||||||||||||||||||||
Sbjct: 27907 gcaagaaagacttaaggttg 27888

---

>emb|X55040.1|OCCALSEQ O.cuniculus mRNA for calsequestrin
          Length = 2510

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1041 agaagactttcaagattgac 1060

---

>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    cattggagaaccggcaactc 416
              ||||||||||||||||||||
Sbjct: 498383 cattggagaaccggcaactc 498402

---

>gb|DQ383656.1| Leishmania herreri strain LV341 (ISHA/CR/74/Sh-1) RNA polymerase II
           large subunit gene, partial cds
          Length = 1266

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 407 ccggcaactcagatgactctgaatactttcca 438
           ||||||||||||||||| || ||||| |||||
Sbjct: 787 ccggcaactcagatgaccctcaataccttcca 818

---

>gb|DQ383652.1| Leishmania colombiensis strain L1245 (IGOM/PA/85/E582.34) RNA
           polymerase II large subunit gene, partial cds
          Length = 1266

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 407 ccggcaactcagatgactctgaatactttcca 438
           ||||||||||||||||| || ||||| |||||
Sbjct: 787 ccggcaactcagatgaccctcaataccttcca 818

---

>emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; segment 2/5
          Length = 338100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 410   gcaactcagatgactctgaatact 433
             ||||| ||||||||||||||||||
Sbjct: 10257 gcaacgcagatgactctgaatact 10280

---

>emb|BX511135.6| Zebrafish DNA sequence from clone CH211-134D21 in linkage group 5,
            complete sequence
          Length = 164976

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 256  cacatttgctagcaagagggtatt 279
            ||||||||||||||||||| ||||
Sbjct: 6676 cacatttgctagcaagaggctatt 6699

---

>emb|CR392331.15| Zebrafish DNA sequence from clone CH211-9F23 in linkage group 4,
             complete sequence
          Length = 170278

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgcacccaatggaaattgtg 145
             ||||||||||||||||||||
Sbjct: 53321 tgcacccaatggaaattgtg 53340

---

>emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on chromosome 1 Contains the
              gene for an ortholog of human amyotrophic lateral sclerosis
              2 (juvenile) chromosome region, candidate 19 (ALS2CR19),
              the 3' end of a novel gene and two CpG islands, complete
              sequence
          Length = 216046

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    agatgactctgaatactttc 436
              ||||||||||||||||||||
Sbjct: 133332 agatgactctgaatactttc 133351

---

>emb|AL645946.6| Mouse DNA sequence from clone DN-276O13 on chromosome 1 Contains part
             of the ortholog of human amyotrophic lateral sclerosis 2
             (juvenile) chromosome region candidate 19 ALS2CR19
             (2810455B10RIK 6030439I24RIK 2010002N16RIK), and the 3'
             end of a novel gene (4930448K12RIK 4930412B09RIK),
             complete sequence
          Length = 140936

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   agatgactctgaatactttc 436
             ||||||||||||||||||||
Sbjct: 60450 agatgactctgaatactttc 60469

---

>emb|CR858976.1| Pongo pygmaeus mRNA; cDNA DKFZp468D075 (from clone DKFZp468D075)
          Length = 2670

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1200 agaagactttcaagattgac 1219

---

>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence
          Length = 216011

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     agaagactttcaagattgac 106
              ||||||||||||||||||||
Sbjct: 140115 agaagactttcaagattgac 140134

---

>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 411     caactcagatgactctgaatactttcca 438
               ||||||||||||| ||||| ||||||||
Sbjct: 1215822 caactcagatgaccctgaacactttcca 1215795

---

>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete sequence
          Length = 114144

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     aagactttcaagattgactt 108
              ||||||||||||||||||||
Sbjct: 106452 aagactttcaagattgactt 106471

---

>gb|AC002341.3| Arabidopsis thaliana chromosome 2 clone T14G11 map TEn5, complete
            sequence
          Length = 82484

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   aagactttcaagattgactt 108
            ||||||||||||||||||||
Sbjct: 4152 aagactttcaagattgactt 4171

---

>ref|XM_704633.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 4 (POLR2A),
            mRNA
          Length = 8092

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704631.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 2 (POLR2A),
            mRNA
          Length = 8149

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704636.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 7 (POLR2A),
            mRNA
          Length = 8017

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704635.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 6 (POLR2A),
            mRNA
          Length = 7954

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704632.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 3 (POLR2A),
            mRNA
          Length = 7831

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704640.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 11
            (POLR2A), mRNA
          Length = 8098

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3189 atctggaatgctcagaagattttc 3212

---

>ref|XM_704638.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 9 (POLR2A),
            mRNA
          Length = 8014

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3105 atctggaatgctcagaagattttc 3128

---

>ref|XM_704642.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 13
            (POLR2A), mRNA
          Length = 8053

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3144 atctggaatgctcagaagattttc 3167

---

>ref|XM_704641.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 12
            (POLR2A), mRNA
          Length = 7987

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3078 atctggaatgctcagaagattttc 3101

---

>ref|XM_704637.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 8 (POLR2A),
            mRNA
          Length = 8104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3171 atctggaatgctcagaagattttc 3194

---

>ref|XM_704634.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 5 (POLR2A),
            mRNA
          Length = 7954

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704639.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 10
            (POLR2A), mRNA
          Length = 8047

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3213 atctggaatgctcagaagattttc 3236

---

>ref|XM_677590.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 1 (POLR2A),
            mRNA
          Length = 8170

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703295.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 15
            (LOC565891), mRNA
          Length = 8088

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703294.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 14
            (LOC565891), mRNA
          Length = 8052

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703293.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 13
            (LOC565891), mRNA
          Length = 8145

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703292.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 12
            (LOC565891), mRNA
          Length = 8013

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703291.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 11
            (LOC565891), mRNA
          Length = 7827

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703290.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 10
            (LOC565891), mRNA
          Length = 7950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703289.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 9 (LOC565891),
            mRNA
          Length = 8049

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3144 atctggaatgctcagaagattttc 3167

---

>ref|XM_703288.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 8 (LOC565891),
            mRNA
          Length = 8010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3105 atctggaatgctcagaagattttc 3128

---

>ref|XM_703287.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 7 (LOC565891),
            mRNA
          Length = 8100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3195 atctggaatgctcagaagattttc 3218

---

>ref|XM_703286.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 6 (LOC565891),
            mRNA
          Length = 8094

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3189 atctggaatgctcagaagattttc 3212

---

>ref|XM_703285.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 5 (LOC565891),
            mRNA
          Length = 8100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3171 atctggaatgctcagaagattttc 3194

---

>ref|XM_703284.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 4 (LOC565891),
            mRNA
          Length = 7950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703283.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 3 (LOC565891),
            mRNA
          Length = 8001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3234 atctggaatgctcagaagattttc 3257

---

>ref|XM_703282.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 2 (LOC565891),
            mRNA
          Length = 8043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3213 atctggaatgctcagaagattttc 3236

---

>ref|XM_681282.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 1 (LOC565891),
            mRNA
          Length = 8166

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>gb|AC069304.7| Homo sapiens BAC clone RP11-632K21 from 7, complete sequence
          Length = 161247

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 403   agaaccggcaactcagatgactct 426
             ||||| ||||||||||||||||||
Sbjct: 98982 agaacaggcaactcagatgactct 99005

---

>emb|BX005475.19| Zebrafish DNA sequence from clone CH211-165I18 in linkage group 4,
             complete sequence
          Length = 157194

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgcacccaatggaaattgtg 145
             ||||||||||||||||||||
Sbjct: 40085 tgcacccaatggaaattgtg 40104

---

>gb|BC022288.1| Homo sapiens calsequestrin 2 (cardiac muscle), mRNA (cDNA clone
            MGC:22461 IMAGE:4289141), complete cds
          Length = 2634

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1129 agaagactttcaagattgac 1148

---

>dbj|AK051398.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130046B10 product:similar to
           ALS2CR19 PROTEIN [Homo sapiens], full insert sequence
          Length = 3664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 417 agatgactctgaatactttc 436
           ||||||||||||||||||||
Sbjct: 635 agatgactctgaatactttc 654

---

>dbj|AK031487.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030439I24
           product:PARTITIONING-DEFECTIVE 3-LIKE PROTEIN SPLICE
           VARIANT B homolog [Homo sapiens], full insert sequence
          Length = 2398

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 417 agatgactctgaatactttc 436
           ||||||||||||||||||||
Sbjct: 593 agatgactctgaatactttc 612

---

>dbj|AK015421.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930448K12 product:unclassifiable, full
            insert sequence
          Length = 1879

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  agatgactctgaatactttc 436
            ||||||||||||||||||||
Sbjct: 1242 agatgactctgaatactttc 1223

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      tcaagattgacttaagaaga 115
               ||||||||||||||||||||
Sbjct: 4993034 tcaagattgacttaagaaga 4993053

---

>ref|XM_343922.2| PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed)
            polypeptide A (Polr2a), mRNA
          Length = 5316

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 419  atgactctgaatactttccattatgctggtgt 450
            ||||| ||||| |||||||| |||||||||||
Sbjct: 3241 atgaccctgaacactttccactatgctggtgt 3272

---

>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0671B11
          Length = 168372

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    tcaagattgacttaagaaga 115
             ||||||||||||||||||||
Sbjct: 93487 tcaagattgacttaagaaga 93506

---

>gb|BC092229.1| Mus musculus calsequestrin 2, mRNA (cDNA clone MGC:115896
            IMAGE:30603069), complete cds
          Length = 2457

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1053 agaagactttcaagattgac 1072

---

>dbj|AK129891.1| Homo sapiens cDNA FLJ26381 fis, clone HRT06737, highly similar to
            Calsequestrin, cardiac muscle isoform precursor
          Length = 2675

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1195 agaagactttcaagattgac 1214

---

>dbj|AK129831.1| Homo sapiens cDNA FLJ26321 fis, clone HRT00385, highly similar to
           Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2)
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 75  agaagactttcaagattgac 94

---

>gb|AF001334.1|AF001334 Rattus norvegicus cardiac calsequestrin gene, partial cds
          Length = 2153

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 810 agaagactttcaagattgac 829

---

>gb|AC154459.2| Mus musculus BAC clone RP24-162O6 from 17, complete sequence
          Length = 163506

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    actcagatgactctgaatac 432
              ||||||||||||||||||||
Sbjct: 151622 actcagatgactctgaatac 151641

---

>gb|AC102608.14| Mus musculus chromosome 3, clone RP23-402L6, complete sequence
          Length = 185014

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    ggatgtgtggctgcacagtc 396
              ||||||||||||||||||||
Sbjct: 145241 ggatgtgtggctgcacagtc 145260

---

>emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 in linkage group 4,
              complete sequence
          Length = 157594

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    tgcacccaatggaaattgtg 145
              ||||||||||||||||||||
Sbjct: 114896 tgcacccaatggaaattgtg 114915

---

>emb|CT571245.12| Mouse DNA sequence from clone RP23-2N7 on chromosome 12, complete
              sequence
          Length = 198268

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    ttttgaatgggtcattggtg 326
              ||||||||||||||||||||
Sbjct: 127519 ttttgaatgggtcattggtg 127538

---

>gb|U91483.1|MMU91483 Mus musculus cardiac calsequestrin mRNA, complete cds
          Length = 2070

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 959 agaagactttcaagattgac 978

---

>gb|AF068244.1|AF068244 Mus musculus cardiac calsequestrin mRNA, complete cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1085 agaagactttcaagattgac 1104

---

>gb|AF009158.1|AF009158 Endotrypanum monterogei RNA polymerase II large subunit gene,
           partial cds
          Length = 1268

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 407 ccggcaactcagatgactctgaatactttcca 438
           ||||||||||||||||| || ||||| |||||
Sbjct: 788 ccggcaactcagatgaccctcaataccttcca 819

---

>emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chromosome 17, complete
              sequence
          Length = 240447

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    actcagatgactctgaatac 432
              ||||||||||||||||||||
Sbjct: 203245 actcagatgactctgaatac 203226

---

>ref|NM_009814.1| Mus musculus calsequestrin 2 (Casq2), mRNA
          Length = 2070

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 959 agaagactttcaagattgac 978

---

>gb|BC072547.1| Rattus norvegicus calsequestrin 2, mRNA (cDNA clone MGC:91724
            IMAGE:7105911), complete cds
          Length = 2465

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1095 agaagactttcaagattgac 1114

---

>emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, complete sequence
          Length = 232537

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    atctggaatgctcagaagactttc 97
             ||||||||||||||||||| ||||
Sbjct: 14852 atctggaatgctcagaagattttc 14829

---

>emb|AL929106.5| Mouse DNA sequence from clone RP23-446N16 on chromosome 2, complete
             sequence
          Length = 130872

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gctactttattcttcaatat 243
             ||||||||||||||||||||
Sbjct: 75865 gctactttattcttcaatat 75884

---

>gb|U33287.1|RNU33287 Rattus norvegicus calsequestrin mRNA, complete cds
          Length = 1681

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1089 agaagactttcaagattgac 1108

---

>emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chromosome 1, complete
             sequence
          Length = 66822

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agaagactttcaagattgac 106
             ||||||||||||||||||||
Sbjct: 34328 agaagactttcaagattgac 34309

---

>dbj|D55655.1| Homo sapiens mRNA for cardiac calsequestrin, complete cds
          Length = 2528

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1065 agaagactttcaagattgac 1084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,708,200
Number of Sequences: 3902068
Number of extensions: 3708200
Number of successful extensions: 64932
Number of sequences better than 10.0: 242
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64371
Number of HSP's gapped (non-prelim): 551
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---