ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31d04 |
|---|---|
| Clone Library Name | barley_pub |
>SDE3_ARATH (Q8GYD9) Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing| defective protein 3) Length = 1002 Score = 84.7 bits (208), Expect = 1e-16 Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%) Frame = +3 Query: 249 GHHSDDEYSVAGDKPEVEFMDFQNDNTLQDYQS-DDGPVVVTAPFPFVNGKPKSVLVGET 425 G+ SDDEYSV DK E+ F+D+QND + Y D+GPVVV+ PFPF KP+SV VGET Sbjct: 5 GYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFPFKKEKPQSVTVGET 64 Query: 426 STDTIYIENTXCEPV 470 S D+ ++NT EPV Sbjct: 65 SFDSFTVKNTMDEPV 79
>SODC_BRUSU (P66827) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 174 Score = 32.0 bits (71), Expect = 0.83 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = +3 Query: 114 HASPSDSHHHLVPDGGLIQSNL------------SAAVPPHLRSPARLRASPRGFKMGHH 257 H P ++HHHL P+G +L V PHL+ A ++ + M H Sbjct: 93 HYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIK---QRSLMVHV 149 Query: 258 SDDEYSVAGDKPE 296 D YS DKPE Sbjct: 150 GGDNYS---DKPE 159
>SODC_BRUME (P66826) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 174 Score = 32.0 bits (71), Expect = 0.83 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = +3 Query: 114 HASPSDSHHHLVPDGGLIQSNL------------SAAVPPHLRSPARLRASPRGFKMGHH 257 H P ++HHHL P+G +L V PHL+ A ++ + M H Sbjct: 93 HYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIK---QRSLMVHV 149 Query: 258 SDDEYSVAGDKPE 296 D YS DKPE Sbjct: 150 GGDNYS---DKPE 159
>SODC_BRUAB (P15453) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 173 Score = 32.0 bits (71), Expect = 0.83 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = +3 Query: 114 HASPSDSHHHLVPDGGLIQSNL------------SAAVPPHLRSPARLRASPRGFKMGHH 257 H P ++HHHL P+G +L V PHL+ A ++ + M H Sbjct: 92 HYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIK---QRSLMVHV 148 Query: 258 SDDEYSVAGDKPE 296 D YS DKPE Sbjct: 149 GGDNYS---DKPE 158
>MPC2_RALEU (P17296) Metapyrocatechase 2 (EC 1.13.11.2) (MPC) (CatO2ase)| (Catechol 2,3-dioxygenase II) Length = 320 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 150 PDGGLIQSNLSAAVPPHLRSPARLRASPRG 239 PDG L+Q + P +SPARL +P G Sbjct: 121 PDGNLVQVKIGPKTSPSSKSPARLEGAPGG 150
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +3 Query: 213 ARLRASPRGFKMGHHSDDEYSVAGDKPEVEF-------MDFQNDNTLQDYQSDD-GPVVV 368 +R+ + R F G+ DD+Y GD+ E + ++D + DY+ DD GP Sbjct: 272 SRIGSGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGP--- 328 Query: 369 TAPFPFVNGKPKS 407 P +N KP+S Sbjct: 329 -PQRPRLNLKPRS 340
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +3 Query: 213 ARLRASPRGFKMGHHSDDEYSVAGDKPEVEF-------MDFQNDNTLQDYQSDD-GPVVV 368 +R+ + R F G+ DD+Y GD+ E + ++D + DY+ DD GP Sbjct: 272 SRIGSGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGP--- 328 Query: 369 TAPFPFVNGKPKS 407 P +N KP+S Sbjct: 329 -PQRPKLNLKPRS 340
>BLNK_CHICK (Q9YGC1) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter SH2 domain-containing protein) Length = 552 Score = 29.6 bits (65), Expect = 4.1 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Frame = +3 Query: 102 TRTAHASPSDSHHHLVPDGGLIQSNLSAAVP----PHLRSPARLRASPRGFKMGHHSDDE 269 +R +A SHH L P + S S+A+P P L SPA P + +D Sbjct: 134 SRGEYADNRTSHHQLPPINKPLPSTPSSALPRPKKPSLPSPAAKPKLPLKPRECSDDEDN 193 Query: 270 YSVAGDKPEVEFMDFQNDNTLQDYQSDDGPVVVTAPFPFVNGKPKSVL 413 Y V +D +DN ++ +S P F+ KS L Sbjct: 194 YIVP--------VDNDDDNYIEPTESSTPPPAKPPVNRFMKPPAKSAL 233
>SENP6_HUMAN (Q9GZR1) Sentrin-specific protease 6 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP6) (SUMO-1-specific protease 1) Length = 1112 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 10/45 (22%) Frame = +3 Query: 252 HHSD----------DEYSVAGDKPEVEFMDFQNDNTLQDYQSDDG 356 HH+D DE AG E E +DF D QD SDDG Sbjct: 903 HHTDGLSKIRLNYSDESPEAGKMLEDELVDFSEDQDNQDDSSDDG 947
>FAR2_CAEEL (P34383) Fatty-acid and retinol-binding protein 2 precursor| Length = 182 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 276 VAGDKPEVEFMDFQNDNTLQDYQ--SDDGPVVVTAPFPFVNG 395 +AGDKP ++ + + +Y+ SDD +TA FP + G Sbjct: 125 LAGDKPTLDSLKELAKGYIAEYKALSDDAKATITAEFPILTG 166
>SLP2_DROME (P32031) Fork head domain transcription factor slp2 (Sloppy paired| locus protein 2) Length = 445 Score = 29.3 bits (64), Expect = 5.4 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 17/110 (15%) Frame = +3 Query: 114 HASPSDSHHHLV----PDGGLIQSNLSAAVPPHLRSPARLRASPRGFKMGHHSDDEYSVA 281 H P +HH + P G + + + A PHL+S + S + HH +DE Sbjct: 25 HPLPPTTHHSALQSPHPVGLNLTNLMKMARTPHLKSSFSIN-SILPETVEHHDEDEEEDV 83 Query: 282 GDKPEVEFMDFQNDNTL--------QDYQSDDGP-----VVVTAPFPFVN 392 K +F N+N L +D++++ P V +P P N Sbjct: 84 EKKSPAKFPPNHNNNNLNTTNWGSPEDHEAESDPESDLDVTSMSPAPVAN 133
>PDI_MEDSA (P29828) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 512 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 357 PVVVTAPFPFVNGKPKSVLVGETSTDTIY 443 P V + P P N +P V+VG+T D ++ Sbjct: 364 PFVKSEPIPETNNEPVKVVVGQTLEDVVF 392
>SEC16_YEAST (P48415) Multidomain vesicle coat protein| Length = 2195 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 117 ASPSDSHHHLVPDGGLIQSNLSAAVPPHLRSPARLRASPRGFKMGHHSDDEY 272 A+PS +H L DG L+ LS+ P P G K +DDEY Sbjct: 191 ATPSQYNHFLPSDGNLLSPELSSGDTP-------THNVPLGTKDNEINDDEY 235
>KRFJ_COTJA (Q92012) Beta-keratin-related protein| Length = 108 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 357 PVVVTAPFPFVNGKPKSVLVGETSTDTI 440 PVVVT P P ++ P+S VG T++ + Sbjct: 39 PVVVTLPGPILSSFPQSTAVGSTASAAV 66
>KRFJ_CHICK (O13152) Beta-keratin-related protein| Length = 108 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 357 PVVVTAPFPFVNGKPKSVLVGETSTDTI 440 PVVVT P P ++ P+S VG T++ + Sbjct: 39 PVVVTLPGPILSSFPQSTAVGSTASAAV 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,126,357 Number of Sequences: 219361 Number of extensions: 933424 Number of successful extensions: 2495 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2450 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2494 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
