>NAGS_HUMAN (Q8N159) N-acetylglutamate synthase, mitochondrial precursor (EC|
           2.3.1.1) (Amino-acid acetyltransferase) [Contains:
           N-acetylglutamate synthase long form; N-acetylglutamate
           synthase short form; N-acetylglutamate synthase
           conserved domain form]
          Length = 534

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -2

Query: 347 LHCRSNRRAV*LASCATNGRSCSSRRTYPF*NPEDYHSQSRYAQSP----PSWPPVPR 186
           L C + RRA   A   + GR  S+  + P   PE+Y      +QSP    PSW P PR
Sbjct: 31  LSCGARRRA---ARGTSPGRRLSTAWSQPQPPPEEYAGADDVSQSPVAEEPSWVPSPR 85

>SWR1_KLULA (Q6CJ38) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1572

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 233 DYDNLPDFRKGMSVLTNRIFHLWHMMRATQHAGLIGNEGESMET 364
           D+  L   R    +LTN +FHLW      ++  L  N   S +T
Sbjct: 6   DWRQLAKTRLEYELLTNELFHLWEFTSLVEYDPLFRNTSNSFKT 49

>IKBA_CHICK (Q91974) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)|
           (IkappaBalpha) (IKB-alpha) (REL-associated protein pp40)
          Length = 318

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
 Frame = -3

Query: 319 CSSHHVPQMEDPVRQDGHTLSEIRKIIIVRVAMRNLLHLG--LLCLDP--SHTLLH---- 164
           C  HH+  +      +GHT   +  I      +  LL LG  +   +P    T LH    
Sbjct: 171 CQPHHLLAVLQATNYNGHTCLHLASIQGYLAVVEYLLSLGADVNAQEPCNGRTALHLAVD 230

Query: 163 -ADSSLIELLDKHGP 122
             +S L+ LL KHGP
Sbjct: 231 LQNSDLVSLLVKHGP 245

>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
 Frame = -2

Query: 470 FQNGEQISSSMDAEPLLPWATSYRLPSLRRCQSCSGSPSIHLHCRSNRRAV*LASCATNG 291
           + N  Q    ++ E +LP  +S R PS       S        C S   ++   SC +  
Sbjct: 129 YHNNNQFFHDVEVEDVLP--SSKRSPSTATLSLPSLEAYRDPSCLSPASSLSSRSCNSEA 186

Query: 290 RSCSSRRTYPF*NPEDYHSQSRYAQSPPSWPP---VPRSIAYSPAC------RFQPDRAP 138
            S  S  +YP+ +P+    QS    SP +  P    PR +    AC      R  P  +P
Sbjct: 187 SSYESNYSYPYASPQTSPWQSP-CVSPKTTDPEEGFPRGLG---ACTLLGSPRHSPSTSP 242

Query: 137 R*TWTRHSFPSNPLRRPS 84
           R + T  S+      RP+
Sbjct: 243 RASVTEESWLGARSSRPA 260

>MINC_SYNEL (Q8DHE3) Probable septum site-determining protein minC|
          Length = 266

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +2

Query: 221 HSDSDYDNLPDFRKGMSVLTNRIFHLWHMMRATQHAGLIGNEGESMETPSKIGNGGEMAI 400
           H D+    + D   G S++      +W  +R   HAG  GN G  + T        ++ I
Sbjct: 165 HHDASVIIVGDVNAGASIIAAGDIIVWGRLRGVAHAGAKGNLGARIMTLEMAAT--QLRI 222

Query: 401 GRMLPRGAGVPHP 439
             +L R    P P
Sbjct: 223 ADLLARTPDPPRP 235

>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding|
           protein 7)
          Length = 353

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 31/109 (28%), Positives = 40/109 (36%)
 Frame = -2

Query: 470 FQNGEQISSSMDAEPLLPWATSYRLPSLRRCQSCSGSPSIHLHCRSNRRAV*LASCATNG 291
           F N  Q+S S    PL          SL+R   C+ SPS   HC   R++          
Sbjct: 221 FTNPSQLSGSRGKPPLSS-------ASLKR--RCNSSPSSRCHCSKKRKS--RVKRVIRV 269

Query: 290 RSCSSRRTYPF*NPEDYHSQSRYAQSPPSWPPVPRSIAYSPACRFQPDR 144
            + SS+       P D  S  +Y Q P    P PR      + R  P R
Sbjct: 270 PAVSSKMAD---IPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPAR 315

>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)|
          Length = 515

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 239 HSQSRYAQSPPSWPPVPRS--IAYSPA 165
           HS+ RY ++PPS PP P    +A SPA
Sbjct: 56  HSRHRYPETPPSLPPPPSPGILATSPA 82

>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 271  RLDEQDLPFVAHDASYTARRFDRQ*R*IDGDPEQDWQRRRDGNR 402
            RL E+D     HD      R D + R  D D ++DW R RD +R
Sbjct: 1298 RLQERDR--YEHDRERERERRDTRQREWDRDADKDWPRNRDRDR 1339

>TRM1_SULTO (Q971V9) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC|
           2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           (tRNA 2,2-dimethylguanosine-26 methyltransferase)
           (tRNA(m(2,2)G26)dimethyltransferase)
          Length = 374

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 254 NPEDYHSQSRYAQSPPSWPPVPRSIAYSPACRFQPD 147
           NP+DY  + RY    PSW PV     Y+P  R   D
Sbjct: 17  NPKDYEKEGRY---DPSWSPV----FYNPKMRLNRD 45

>B4GT3_PONPY (Q5NVN3) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 393

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 269 TYPF*NPEDYHSQSRYAQSPPSWPPVPRSIAYSP 168
           T+ + +P D +S   +    P  PP P+ + Y P
Sbjct: 45  TFDYSHPRDVYSNLSHLPGAPGGPPAPQGLPYCP 78

>B4GT3_HUMAN (O60512) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 393

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 269 TYPF*NPEDYHSQSRYAQSPPSWPPVPRSIAYSP 168
           T+ + +P D +S   +    P  PP P+ + Y P
Sbjct: 45  TFDYSHPRDVYSNLSHLPGAPGGPPAPQGLPYCP 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,323,060
Number of Sequences: 219361
Number of extensions: 1416991
Number of successful extensions: 4844
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4843
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)