ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
2dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
3emb|AJ323621.1|HSA323621 Homo sapiens genomic sequence surroundi... 46 0.11
4ref|XM_864222.1| PREDICTED: Bos taurus similar to Protein AD-016... 44 0.42
5ref|NM_025510.1| Mus musculus RIKEN cDNA 2310004I24 gene (231000... 44 0.42
6gb|AC140455.2| Mus musculus BAC clone RP23-24B2 from chromosome ... 44 0.42
7gb|AC131736.2| Mus musculus BAC clone RP23-104E2 from 18, comple... 44 0.42
8gb|BC004029.1| Mus musculus RIKEN cDNA 2310004I24 gene, mRNA (cD... 44 0.42
9emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in ... 44 0.42
10emb|AL645988.6| Mouse DNA sequence from clone RP23-67J22 on chro... 44 0.42
11gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, com... 44 0.42
12gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Can... 44 0.42
13dbj|AK145941.1| Mus musculus 14 days pregnant adult female place... 44 0.42
14dbj|AK010520.1| Mus musculus ES cells cDNA, RIKEN full-length en... 44 0.42
15dbj|AK009142.1| Mus musculus adult male tongue cDNA, RIKEN full-... 44 0.42
16dbj|AP003355.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.42
17emb|BX957242.15| Zebrafish DNA sequence from clone CH211-129B17 ... 42 1.7
18gb|AC149382.2| Phakopsora pachyrhizi clone JGIAFNA-5A8, complete... 40 6.5
19ref|XM_467554.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
20gb|AY613340.1| Prunus dulcis cultivar S53 RNase-like gene, parti... 40 6.5
21gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
22gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.5
24gb|AC009070.12| Homo sapiens chromosome 16 clone RP11-314O13, co... 40 6.5
25gb|AC006333.3| Homo sapiens BAC clone RP11-390E23 from 7, comple... 40 6.5
26gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complet... 40 6.5
27emb|AL355139.10| Human DNA sequence from clone RP3-434O11 on chr... 40 6.5
28gb|AY291118.1| Prunus dulcis cultivar Nonpareil RNase (S) gene, ... 40 6.5
29emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; se... 40 6.5
30gb|AF510420.1| Prunus dulcis cultivar Ne Plus Ultra RNase (S) ge... 40 6.5
31emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 i... 40 6.5
32gb|AC171368.3| Cavia porcellus clone CH234-176E17, complete sequ... 40 6.5
33gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.5
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
39emb|BX004882.10| Zebrafish DNA sequence from clone CH211-185C9, ... 40 6.5
40gb|AC158163.2| Mus musculus BAC clone RP24-421A1 from chromosome... 40 6.5
41dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
42gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, comple... 40 6.5
43dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
44dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
45dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
46gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340... 40 6.5
47emb|AL953865.9| Zebrafish DNA sequence from clone CH211-113E8 in... 40 6.5
48dbj|AB081587.1| Prunus dulcis genes for S-locus F-Box protein c,... 40 6.5
49dbj|AK108358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
50dbj|AK073242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
51dbj|AK066732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
52emb|AL929022.7| Zebrafish DNA sequence from clone CH211-112F3, c... 40 6.5
53gb|AY067314.1| Schmidtea mediterranea clone HB.22.4e unknown mRN... 40 6.5 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  159 bits (80), Expect = 1e-35
 Identities = 171/202 (84%)
 Strand = Plus / Minus

                                                                           
Query: 245     ggacgatataaaccacctcatttacgaaaaaaggatggaaaaacaaatgattcattggat 304
               |||||||||||||| ||||||||||| |||| || ||||||   ||||||||| || |||
Sbjct: 3034678 ggacgatataaaccccctcatttacgtaaaaggggtggaaagggaaatgattcgttcgat 3034619

                                                                           
Query: 305     gatcgaagttcagatagtgaatcttctcggtatgatttaggctcatcagattctgatcta 364
               | ||||| ||| ||||||||||| ||||| ||||||||| ||||||||||||| ||| | 
Sbjct: 3034618 ggtcgaaattctgatagtgaatcctctcgatatgatttaagctcatcagattcagatatg 3034559

                                                                           
Query: 365     agcgatactgatggatatgcanaanatggagaccgtttcgggagttcgaaagctagacta 424
               || ||||  |||||||||||| ||  |||||| |||||| | ||||| || |||||| ||
Sbjct: 3034558 agtgatagcgatggatatgcaaaaactggagatcgtttccgaagttcaaaggctagatta 3034499

                                     
Query: 425     gctgccatcctttgtatacagg 446
               |||||||||||||| |||||||
Sbjct: 3034498 gctgccatcctttgcatacagg 3034477



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                           
Query: 53      agattttatacttcctttcttcgttgtctgcatttcgttctttcagaaccaaaagcttca 112
               ||||||||||| || |||||||||||||||||||  ||||||||||| || ||||   ||
Sbjct: 3034957 agattttatacctcatttcttcgttgtctgcattctgttctttcagaccccaaaggccca 3034898

                              
Query: 113     ctttcaggacatgta 127
               ||||||| |||||||
Sbjct: 3034897 ctttcagcacatgta 3034883



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                           
Query: 129     caggttttgtggcaaatttgcaaatgttttttgtgtatgggctaaggtcatcttcgccat 188
               ||||||| || || || |||||||| |||||  |||| ||||||||||||||||| ||| 
Sbjct: 3034785 caggtttcgttgcgaacttgcaaatatttttcatgtacgggctaaggtcatcttcaccac 3034726

                            
Query: 189     ctgcgataactcc 201
               ||| |||||||||
Sbjct: 3034725 ctgtgataactcc 3034713
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>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1349_D05
          Length = 174478

 Score =  159 bits (80), Expect = 1e-35
 Identities = 171/202 (84%)
 Strand = Plus / Minus

                                                                         
Query: 245   ggacgatataaaccacctcatttacgaaaaaaggatggaaaaacaaatgattcattggat 304
             |||||||||||||| ||||||||||| |||| || ||||||   ||||||||| || |||
Sbjct: 85401 ggacgatataaaccccctcatttacgtaaaaggggtggaaagggaaatgattcgttcgat 85342

                                                                         
Query: 305   gatcgaagttcagatagtgaatcttctcggtatgatttaggctcatcagattctgatcta 364
             | ||||| ||| ||||||||||| ||||| ||||||||| ||||||||||||| ||| | 
Sbjct: 85341 ggtcgaaattctgatagtgaatcctctcgatatgatttaagctcatcagattcagatatg 85282

                                                                         
Query: 365   agcgatactgatggatatgcanaanatggagaccgtttcgggagttcgaaagctagacta 424
             || ||||  |||||||||||| ||  |||||| |||||| | ||||| || |||||| ||
Sbjct: 85281 agtgatagcgatggatatgcaaaaactggagatcgtttccgaagttcaaaggctagatta 85222

                                   
Query: 425   gctgccatcctttgtatacagg 446
             |||||||||||||| |||||||
Sbjct: 85221 gctgccatcctttgcatacagg 85200



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                         
Query: 53    agattttatacttcctttcttcgttgtctgcatttcgttctttcagaaccaaaagcttca 112
             ||||||||||| || |||||||||||||||||||  ||||||||||| || ||||   ||
Sbjct: 85680 agattttatacctcatttcttcgttgtctgcattctgttctttcagaccccaaaggccca 85621

                            
Query: 113   ctttcaggacatgta 127
             ||||||| |||||||
Sbjct: 85620 ctttcagcacatgta 85606



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 129   caggttttgtggcaaatttgcaaatgttttttgtgtatgggctaaggtcatcttcgccat 188
             ||||||| || || || |||||||| |||||  |||| ||||||||||||||||| ||| 
Sbjct: 85508 caggtttcgttgcgaacttgcaaatatttttcatgtacgggctaaggtcatcttcaccac 85449

                          
Query: 189   ctgcgataactcc 201
             ||| |||||||||
Sbjct: 85448 ctgtgataactcc 85436
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>emb|AJ323621.1|HSA323621 Homo sapiens genomic sequence surrounding NotI site, clone NB6-908R
          Length = 684

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 269 cgaaaaaaggatggaaaaacaaa 291
           |||||||||||||||||||||||
Sbjct: 49  cgaaaaaaggatggaaaaacaaa 27
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>ref|XM_864222.1| PREDICTED: Bos taurus similar to Protein AD-016, transcript variant
           1 (LOC613720), mRNA
          Length = 1464

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 310 aagttcagatagtgaatcttct 331
           ||||||||||||||||||||||
Sbjct: 624 aagttcagatagtgaatcttct 645
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>ref|NM_025510.1| Mus musculus RIKEN cDNA 2310004I24 gene (2310004I24Rik), mRNA
          Length = 1533

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 atctgcgataactccgaaggaaaaca 212
           |||||| |||||||||||||||||||
Sbjct: 261 atctgctataactccgaaggaaaaca 236
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>gb|AC140455.2| Mus musculus BAC clone RP23-24B2 from chromosome 18, complete sequence
          Length = 242533

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 310    aagttcagatagtgaatcttct 331
              ||||||||||||||||||||||
Sbjct: 213403 aagttcagatagtgaatcttct 213382
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>gb|AC131736.2| Mus musculus BAC clone RP23-104E2 from 18, complete sequence
          Length = 180201

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 310   aagttcagatagtgaatcttct 331
             ||||||||||||||||||||||
Sbjct: 36308 aagttcagatagtgaatcttct 36287
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>gb|BC004029.1| Mus musculus RIKEN cDNA 2310004I24 gene, mRNA (cDNA clone MGC:7625
           IMAGE:3495093), complete cds
          Length = 1316

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 atctgcgataactccgaaggaaaaca 212
           |||||| |||||||||||||||||||
Sbjct: 235 atctgctataactccgaaggaaaaca 210
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>emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in linkage group 16,
             complete sequence
          Length = 238554

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 207   aaaacaaaacagactcacaatccaga 232
             ||||||||||||||||||||| ||||
Sbjct: 11610 aaaacaaaacagactcacaattcaga 11585
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>emb|AL645988.6| Mouse DNA sequence from clone RP23-67J22 on chromosome 11 Contains four
              novel genes (9130409J20Rik, A530088H08Rik), two genes for a
              novel proteins (2310004I24Rik, A730055C05Rik, LOC193004),
              the Sco1 gene for SCO cytochrome oxidase deficient homolog
              1 (yeast), the 5' end of the Myh3 gene for skeletal muscle
              embryonic myosin heavy polypeptide 3 and a CpG island,
              complete sequence
          Length = 217003

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 187    atctgcgataactccgaaggaaaaca 212
              |||||| |||||||||||||||||||
Sbjct: 159536 atctgctataactccgaaggaaaaca 159561
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>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence
          Length = 197992

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 270    gaaaaaaggatggaaaaacaaatgat 295
              |||||||||| |||||||||||||||
Sbjct: 144763 gaaaaaaggaaggaaaaacaaatgat 144788
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>gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151482

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 50    tcaagattttatacttcctttcttcg 75
             ||||||||||||| ||||||||||||
Sbjct: 90977 tcaagattttatatttcctttcttcg 90952
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>dbj|AK145941.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530017B08
           product:similar to x 006 protein [Homo sapiens], full
           insert sequence
          Length = 1435

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 atctgcgataactccgaaggaaaaca 212
           |||||| |||||||||||||||||||
Sbjct: 226 atctgctataactccgaaggaaaaca 201
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>dbj|AK010520.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410016M23 product:similar to X 006 PROTEIN [Homo
           sapiens], full insert sequence
          Length = 1279

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 atctgcgataactccgaaggaaaaca 212
           |||||| |||||||||||||||||||
Sbjct: 243 atctgctataactccgaaggaaaaca 218
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>dbj|AK009142.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310004I24 product:RIKEN cDNA 2310004I24
           gene, full insert sequence
          Length = 1533

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 atctgcgataactccgaaggaaaaca 212
           |||||| |||||||||||||||||||
Sbjct: 261 atctgctataactccgaaggaaaaca 236
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>dbj|AP003355.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1517D11
          Length = 153728

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 310   aagttcagatagtgaatcttct 331
             ||||||||||||||||||||||
Sbjct: 42170 aagttcagatagtgaatcttct 42149
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>emb|BX957242.15| Zebrafish DNA sequence from clone CH211-129B17 in linkage group 19,
             complete sequence
          Length = 167629

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   aaaacaaatgattcattggat 304
             |||||||||||||||||||||
Sbjct: 25713 aaaacaaatgattcattggat 25733
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>gb|AC149382.2| Phakopsora pachyrhizi clone JGIAFNA-5A8, complete sequence
          Length = 42167

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   aaaaaaggatggaaaaacaa 290
             ||||||||||||||||||||
Sbjct: 22498 aaaaaaggatggaaaaacaa 22479
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>ref|XM_467554.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2049

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 ctcatcagattctgatctaa 365
           ||||||||||||||||||||
Sbjct: 507 ctcatcagattctgatctaa 488
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>gb|AY613340.1| Prunus dulcis cultivar S53 RNase-like gene, partial sequence
          Length = 2021

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 aaaaggatggaaaaacaaat 292
           ||||||||||||||||||||
Sbjct: 475 aaaaggatggaaaaacaaat 494
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>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02,
            complete sequence
          Length = 93826

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  gtggcaaatttgcaaatgtt 156
            ||||||||||||||||||||
Sbjct: 4659 gtggcaaatttgcaaatgtt 4640
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>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
             complete sequence
          Length = 163130

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   gtggcaaatttgcaaatgtt 156
             ||||||||||||||||||||
Sbjct: 99016 gtggcaaatttgcaaatgtt 98997
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 268      acgaaaaaaggatggaaaaacaaa 291
                |||||||||||||| |||||||||
Sbjct: 10279416 acgaaaaaaggatgaaaaaacaaa 10279393
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>gb|AC009070.12| Homo sapiens chromosome 16 clone RP11-314O13, complete sequence
          Length = 203131

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    caaatttgcaaatgtttttt 160
              ||||||||||||||||||||
Sbjct: 139751 caaatttgcaaatgtttttt 139770
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>gb|AC006333.3| Homo sapiens BAC clone RP11-390E23 from 7, complete sequence
          Length = 187532

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    aaggatggaaaaacaaatga 294
              ||||||||||||||||||||
Sbjct: 160939 aaggatggaaaaacaaatga 160958
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>gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complete sequence
          Length = 118869

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ttattattgagagtagtgtt 46
             ||||||||||||||||||||
Sbjct: 48895 ttattattgagagtagtgtt 48876
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>emb|AL355139.10| Human DNA sequence from clone RP3-434O11 on chromosome 6 Contains
            part of the gene for a novel protein, complete sequence
          Length = 11961

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 139  ggcaaatttgcaaatgttttttgt 162
            ||||||| ||||||||||||||||
Sbjct: 4615 ggcaaatgtgcaaatgttttttgt 4592
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>gb|AY291118.1| Prunus dulcis cultivar Nonpareil RNase (S) gene, S7 allele, complete
            cds
          Length = 3467

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  aaaaggatggaaaaacaaat 292
            ||||||||||||||||||||
Sbjct: 1579 aaaaggatggaaaaacaaat 1598
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>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5
          Length = 348986

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   tgatttaggctcatcagattctga 360
             ||||| ||||||||||||||||||
Sbjct: 34937 tgattcaggctcatcagattctga 34960
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>gb|AF510420.1| Prunus dulcis cultivar Ne Plus Ultra RNase (S) gene, S7 allele,
           partial cds
          Length = 2019

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 aaaaggatggaaaaacaaat 292
           ||||||||||||||||||||
Sbjct: 471 aaaaggatggaaaaacaaat 490
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>emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 in linkage group 10,
             complete sequence
          Length = 162115

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tgcaaatgttttttgtgtat 166
             ||||||||||||||||||||
Sbjct: 31506 tgcaaatgttttttgtgtat 31487
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>gb|AC171368.3| Cavia porcellus clone CH234-176E17, complete sequence
          Length = 179405

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aacaaaacagactcacaatc 228
             ||||||||||||||||||||
Sbjct: 62853 aacaaaacagactcacaatc 62834
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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 268    acgaaaaaaggatggaaaaacaaa 291
              |||||||||||||| |||||||||
Sbjct: 140829 acgaaaaaaggatgaaaaaacaaa 140806
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 346      ctcatcagattctgatctaa 365
                ||||||||||||||||||||
Sbjct: 21527573 ctcatcagattctgatctaa 21527554
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      gtggcaaatttgcaaatgtt 156
                ||||||||||||||||||||
Sbjct: 22509609 gtggcaaatttgcaaatgtt 22509590
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 268      acgaaaaaaggatggaaaaacaaa 291
                |||||||||||||| |||||||||
Sbjct: 10277517 acgaaaaaaggatgaaaaaacaaa 10277494
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 346      ctcatcagattctgatctaa 365
                ||||||||||||||||||||
Sbjct: 30129484 ctcatcagattctgatctaa 30129465
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 135      ttgtggcaaatttgcaaatg 154
                ||||||||||||||||||||
Sbjct: 41968686 ttgtggcaaatttgcaaatg 41968667
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>emb|BX004882.10| Zebrafish DNA sequence from clone CH211-185C9, complete sequence
          Length = 137477

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   aaacaaatgattcattggat 304
             ||||||||||||||||||||
Sbjct: 89644 aaacaaatgattcattggat 89663
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>gb|AC158163.2| Mus musculus BAC clone RP24-421A1 from chromosome 16, complete sequence
          Length = 149658

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    gacgatataaaccacctcat 265
              ||||||||||||||||||||
Sbjct: 119212 gacgatataaaccacctcat 119193
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431G06
          Length = 140466

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ttgtggcaaatttgcaaatg 154
             ||||||||||||||||||||
Sbjct: 70763 ttgtggcaaatttgcaaatg 70744
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>gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, complete sequence
          Length = 109840

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 271  aaaaaaggatggaaaaacaaatgattca 298
            ||||| ||| ||||||||||||||||||
Sbjct: 8487 aaaaatggaaggaaaaacaaatgattca 8514
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>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0489D11
          Length = 150757

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   ctcatcagattctgatctaa 365
             ||||||||||||||||||||
Sbjct: 89183 ctcatcagattctgatctaa 89164
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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0685G12
          Length = 149155

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ctcatcagattctgatctaa 365
              ||||||||||||||||||||
Sbjct: 109081 ctcatcagattctgatctaa 109062
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>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1124_G07
          Length = 93240

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 346  ctcatcagattctgatctaa 365
            ||||||||||||||||||||
Sbjct: 2188 ctcatcagattctgatctaa 2169
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>gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340B7, complete sequence
          Length = 199851

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   caaatttgcaaatgtttttt 160
             ||||||||||||||||||||
Sbjct: 14821 caaatttgcaaatgtttttt 14840
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>emb|AL953865.9| Zebrafish DNA sequence from clone CH211-113E8 in linkage group 1,
             complete sequence
          Length = 157603

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   aatttgcaaatgttttttgt 162
             ||||||||||||||||||||
Sbjct: 76068 aatttgcaaatgttttttgt 76049
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>dbj|AB081587.1| Prunus dulcis genes for S-locus F-Box protein c, Sc-RNase, S
            haplotype-specific F-box protein c, complete cds
          Length = 71953

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  aaaaggatggaaaaacaaat 292
            ||||||||||||||||||||
Sbjct: 8524 aaaaggatggaaaaacaaat 8543
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>dbj|AK108358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C07, full
           insert sequence
          Length = 1035

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 227 tccagagcttcttgccatggacga 250
           |||||||||||||||||| |||||
Sbjct: 922 tccagagcttcttgccatcgacga 899
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>dbj|AK073242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033013G23, full
           insert sequence
          Length = 2082

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 ctcatcagattctgatctaa 365
           ||||||||||||||||||||
Sbjct: 609 ctcatcagattctgatctaa 590
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>dbj|AK066732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077L22, full
           insert sequence
          Length = 2545

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 ctcatcagattctgatctaa 365
           ||||||||||||||||||||
Sbjct: 610 ctcatcagattctgatctaa 591
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>emb|AL929022.7| Zebrafish DNA sequence from clone CH211-112F3, complete sequence
          Length = 179671

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    aaacaaatgattcattggat 304
              ||||||||||||||||||||
Sbjct: 165275 aaacaaatgattcattggat 165294
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>gb|AY067314.1| Schmidtea mediterranea clone HB.22.4e unknown mRNA sequence
          Length = 691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 277 ggatggaaaaacaaatgatt 296
           ||||||||||||||||||||
Sbjct: 482 ggatggaaaaacaaatgatt 501


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,541,511
Number of Sequences: 3902068
Number of extensions: 5541511
Number of successful extensions: 105036
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104732
Number of HSP's gapped (non-prelim): 304
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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