Clone Information

BLAST Search Result

Clone Name	bastl31c06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein)...	139	3e-33
2	COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein)...	137	1e-32
3	COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein)...	137	1e-32
4	COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (...	135	6e-32
5	COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat...	126	3e-29
6	COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein)...	115	5e-26
7	COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein)...	110	2e-24
8	COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat...	107	1e-23
9	COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) ...	60	2e-09
10	COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) ...	60	2e-09
11	COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) ...	55	8e-08
12	Y1409_SYNY3 (P73594) Hypothetical WD-repeat protein slr1409	36	0.053
13	COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) ...	35	0.069
14	Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143	33	0.26
15	TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subuni...	33	0.26
16	TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subuni...	33	0.26
17	POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	0.76
18	YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9	32	0.76
19	KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.76
20	KTNB1_BRARE (Q7ZUV2) Katanin p80 WD40-containing subunit B1 homolog	32	0.76
21	KTNB1_MOUSE (Q8BG40) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.76
22	KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.76
23	ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr...	32	0.99
24	WSB2_MOUSE (O54929) WD repeat and SOCS box-containing protein 2 ...	32	0.99
25	KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homo...	32	0.99
26	MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1	32	0.99
27	TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-...	32	0.99
28	POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	0.99
29	ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atr...	32	0.99
30	KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Kat...	31	1.7
31	MYO2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MY...	31	1.7
32	LIS1_CAEEL (Q9NDC9) Lissencephaly-1 homolog (Pronuclear migratio...	30	2.2
33	WDR23_HUMAN (Q8TEB1) WD-repeat protein 23	30	2.9
34	GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit	30	2.9
35	GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit	30	2.9
36	WDR23_MOUSE (Q91VU6) WD-repeat protein 23	30	2.9
37	WDHD1_XENLA (O13046) WD repeat and HMG-box DNA-binding protein 1...	30	3.8
38	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	30	3.8
39	ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop...	29	4.9
40	UVRC_CHLAB (Q5L553) UvrABC system protein C (Protein uvrC) (Exci...	29	4.9
41	PDE8B_HUMAN (O95263) High-affinity cAMP-specific and IBMX-insens...	29	6.4
42	WSB2_HUMAN (Q9NYS7) WD repeat and SOCS box-containing protein 2 ...	29	6.4
43	TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)	29	6.4
44	GNB1L_HUMAN (Q9BYB4) Guanine nucleotide-binding protein beta sub...	29	6.4
45	UVRC_CHLCV (Q821V5) UvrABC system protein C (Protein uvrC) (Exci...	29	6.4
46	SWD1_SCHPO (O42858) Set1 complex component swd1 (Set1C component...	29	6.4
47	HXD13_HETFR (Q9IA17) Homeobox protein Hox-D13	29	6.4
48	IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 ...	29	6.4
49	PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	29	6.4
50	ALDH3_YEAST (P54114) Aldehyde dehydrogenase [NAD(P)+] 2 (EC 1.2....	28	8.4
51	4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E t...	28	8.4
52	IL32_HUMAN (P24001) Interleukin-32 precursor (IL-32) (Natural ki...	28	8.4
53	YTM1_YEAST (Q12024) Microtubule-associated protein YTM1	28	8.4
54	SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15	28	8.4
55	PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homol...	28	8.4
56	PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	28	8.4
57	PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	28	8.4
58	WDHD1_HUMAN (O75717) WD repeat and HMG-box DNA-binding protein 1...	28	8.4
59	PLRG1_RAT (Q9WUC8) Pleiotropic regulator 1	28	8.4
60	PLRG1_HUMAN (O43660) Pleiotropic regulator 1	28	8.4
61	CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-gluta...	28	8.4
62	YR154_MIMIV (Q5UPL6) Putative BTB/POZ domain and WD-repeat prote...	28	8.4
63	PLRG1_MOUSE (Q922V4) Pleiotropic regulator 1	28	8.4
64	GBLP_NEUCR (Q01369) Guanine nucleotide-binding protein beta subu...	28	8.4

>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score =  139 bits (350), Expect = 3e-33
 Identities = 63/82 (76%), Positives = 75/82 (91%)
 Frame = +3

Query: 210 MPLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 389
           MPLRLDIKRKL  RS+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 390 RSAKFIARKAWVVAGADDMFIR 455
           R+AKF+ARK WVV GADDM IR
Sbjct: 61  RAAKFVARKNWVVTGADDMQIR 82



 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADDMFIR 455
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D  +R
Sbjct: 199 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR 254

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>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score =  137 bits (345), Expect = 1e-32
 Identities = 62/81 (76%), Positives = 74/81 (91%)
 Frame = +3

Query: 213 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 392
           PLRLDIKRKL  RS+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPVR
Sbjct: 1   PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60

Query: 393 SAKFIARKAWVVAGADDMFIR 455
           +AKF+ARK WVV GADDM IR
Sbjct: 61  AAKFVARKNWVVTGADDMQIR 81



 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADDMFIR 455
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D  +R
Sbjct: 198 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR 253

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>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score =  137 bits (345), Expect = 1e-32
 Identities = 62/81 (76%), Positives = 74/81 (91%)
 Frame = +3

Query: 213 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 392
           PLRLDIKRKL  RS+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPVR
Sbjct: 1   PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60

Query: 393 SAKFIARKAWVVAGADDMFIR 455
           +AKF+ARK WVV GADDM IR
Sbjct: 61  AAKFVARKNWVVTGADDMQIR 81



 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADDMFIR 455
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D  +R
Sbjct: 198 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR 253

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>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 904

 Score =  135 bits (339), Expect = 6e-32
 Identities = 61/81 (75%), Positives = 73/81 (90%)
 Frame = +3

Query: 213 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 392
           PLRLDIKRKL   S+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPVR
Sbjct: 1   PLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60

Query: 393 SAKFIARKAWVVAGADDMFIR 455
           +AKF+ARK WVV GADDM IR
Sbjct: 61  AAKFVARKNWVVTGADDMQIR 81



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADDMFIR 455
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D  +R
Sbjct: 198 KPYLISGADDRLVKIWDYQNKTCVQTPEGHAQNVSCATFHPELPIIITGSEDGTVR 253

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>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 1000

 Score =  126 bits (316), Expect = 3e-29
 Identities = 56/82 (68%), Positives = 71/82 (86%)
 Frame = +3

Query: 210 MPLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 389
           MPLRLD+KRKL  RS+RVK  DLHP E W+L++LY+G+V IWNY+TQT+VKSFEV ++PV
Sbjct: 1   MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPV 60

Query: 390 RSAKFIARKAWVVAGADDMFIR 455
           R+AKF+ RK+WVV G+DDM IR
Sbjct: 61  RAAKFVPRKSWVVTGSDDMHIR 82



 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADDMFIR 455
           +P+I+S      V IW+YQ +T V++ +     V S  F      ++ G++D  +R
Sbjct: 199 KPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELPLIITGSEDSTVR 254

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>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 914

 Score =  115 bits (288), Expect = 5e-26
 Identities = 52/82 (63%), Positives = 66/82 (80%)
 Frame = +3

Query: 210 MPLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 389
           MPL+LDIKR+L  RS+RVK  DLHP EPW+L +LY+G V I NY+ Q MVK FEV ++PV
Sbjct: 1   MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPV 60

Query: 390 RSAKFIARKAWVVAGADDMFIR 455
           RSA+F+ARK W++ G+DDM IR
Sbjct: 61  RSARFVARKNWILTGSDDMQIR 82



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADDMFIR 455
           +P+++S      V IW+YQ +T V++ E     + +  F      V+ G++D  +R
Sbjct: 199 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHPELPIVLTGSEDGTVR 254

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>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 889

 Score =  110 bits (274), Expect = 2e-24
 Identities = 47/80 (58%), Positives = 63/80 (78%)
 Frame = +3

Query: 216 LRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRS 395
           ++LDIK+  + RS+RVK  D HPTEPW+L++LYSG V +WNY+TQ  V+S +VTE PVR+
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60

Query: 396 AKFIARKAWVVAGADDMFIR 455
            KFIARK W++ G+DD  IR
Sbjct: 61  GKFIARKNWIIVGSDDFRIR 80



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEV 374
           V  A  HPT P I+S    G++ IWN  T  + K+  V
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +3

Query: 282 PTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGADD 443
           P +P+++++    ++ IW+YQT++ V + E     V  A F      +++G++D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQ-TMVKSFE 371
           ++S  +HPT+P++LS     +V +WN++    + ++FE
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137

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>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 796

 Score =  107 bits (267), Expect = 1e-23
 Identities = 44/80 (55%), Positives = 62/80 (77%)
 Frame = +3

Query: 216 LRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRS 395
           +RLD +RKL   +ERVK+ D HPTEPW+++S Y+G V IWNY TQT+V+SF++ ++P+R+
Sbjct: 2   MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRA 61

Query: 396 AKFIARKAWVVAGADDMFIR 455
             FIARK W V G+DD  +R
Sbjct: 62  CAFIARKNWFVCGSDDFQVR 81



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +3

Query: 234 RKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIAR 413
           R L   +  V  A  H   P I+S    G+V IW+  + +++KS+           F   
Sbjct: 222 RILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIWHTLSYSLIKSY----------NFSLD 271

Query: 414 KAWVVAGADD 443
           +AW +A   D
Sbjct: 272 RAWCIAQNKD 281

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>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin]
          Length = 1224

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +3

Query: 237 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 416
           K   +S RVK    HP  PWIL+SL++G + +W+Y+  T++  F+  + PVR   F  ++
Sbjct: 4   KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63

Query: 417 AWVVAGADDMFIR 455
              V+G DD  I+
Sbjct: 64  PLFVSGGDDYKIK 76



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           +++   H   PWILS+    ++ +WN+Q++T V         V  A+F   +  VV+ + 
Sbjct: 96  IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASL 155

Query: 441 DMFIR 455
           D  +R
Sbjct: 156 DQTVR 160



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +3

Query: 237 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 416
           K  +    V+  D H  +P  +S      + +WNY+ +  + +       +R+  F    
Sbjct: 46  KFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEY 105

Query: 417 AWVVAGADDMFIR 455
            W+++ +DD  IR
Sbjct: 106 PWILSASDDQTIR 118

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>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin]
          Length = 1224

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +3

Query: 237 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 416
           K   +S RVK    HP  PWIL+SL++G + +W+Y+  T++  F+  + PVR   F  ++
Sbjct: 4   KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63

Query: 417 AWVVAGADDMFIR 455
              V+G DD  I+
Sbjct: 64  PLFVSGGDDYKIK 76



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           +++   H   PWILS+    ++ +WN+Q++T V         V  A+F   +  VV+ + 
Sbjct: 96  IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASL 155

Query: 441 DMFIR 455
           D  +R
Sbjct: 156 DQTVR 160



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +3

Query: 237 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 416
           K  +    V+  D H  +P  +S      + +WNY+ +  + +       +R+  F    
Sbjct: 46  KFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEY 105

Query: 417 AWVVAGADDMFIR 455
            W+++ +DD  IR
Sbjct: 106 PWILSASDDQTIR 118

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>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 25/73 (34%), Positives = 40/73 (54%)
 Frame = +3

Query: 237 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 416
           K   +S R K    HP+ PW+L +L+S ++ +W+Y+  T++  FE  E PVR   F   +
Sbjct: 6   KFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQ 65

Query: 417 AWVVAGADDMFIR 455
              V+  DD  I+
Sbjct: 66  PIFVSAGDDYTIK 78



 Score = 35.0 bits (79), Expect = 0.090
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V+  D HPT+P  +S+    ++ +W+  T   + +       VR+  F     W+++ +D
Sbjct: 56  VRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASD 115

Query: 441 DMFIR 455
           D  IR
Sbjct: 116 DQTIR 120



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V++   H   PWI+S+    ++ IWN+Q +  +         V  A+F      +V+ + 
Sbjct: 98  VRTVFFHRELPWIISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDDLIVSASL 157

Query: 441 DMFIR 455
           D  IR
Sbjct: 158 DETIR 162

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>Y1409_SYNY3 (P73594) Hypothetical WD-repeat protein slr1409|
          Length = 326

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I+R+++    R+ + +  P    +L+S  +GS  +WN   + + +   V    V SA+F 
Sbjct: 204 IEREISTGQGRINNVNFSPNGEQLLTSGINGSAKLWNLAGELIHEYKVVPTGWVNSAQFY 263

Query: 408 ARKAWVVAGADDMFIR 455
            +  W+   +DD  IR
Sbjct: 264 PKGEWLATASDDGTIR 279

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>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin] (Fragment)
          Length = 35

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 KLAQRSERVKSADLHPTEPWILSSLYSGSV 326
           K   +S RVK    HP  PWIL+SL++G +
Sbjct: 4   KFETKSARVKGLSFHPKRPWILTSLHNGVI 33

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>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143|
          Length = 1191

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 246  QRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKS 365
            QR E ++S  LHPT P + +    G++ +WN+   T+++S
Sbjct: 995  QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNFD-GTLIRS 1033

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>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V  A   P   ++LSS   G+V +W+ QT T +  ++    PV   +F     + V+G  
Sbjct: 547 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGH 606

Query: 441 DMFIR 455
           D   R
Sbjct: 607 DRVAR 611

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>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 800

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V  A   P   ++LSS   G+V +W+ QT T +  ++    PV   +F     + V+G  
Sbjct: 546 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGH 605

Query: 441 DMFIR 455
           D   R
Sbjct: 606 DRVAR 610

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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 98  REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG--YQEEARAEVGEGQ 265
           R+AG  R  +    AP  P G SSS G+   + PSR ++  +G  Y    RAE  EG+
Sbjct: 428 RQAGFLRDGSMGKEAPQLPRGPSSS-GADTNSTPSRSSSGSIGKIYAAGERAEGAEGE 484

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>YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9|
          Length = 571

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNY 341
           + R+L   +  V+  D HPTE  I+SS + G   +W +
Sbjct: 476 VSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTW 513

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>KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 655

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I R L      + S D HP   ++ S     ++ +W+ + +  V  +      VR  +F 
Sbjct: 97  ILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFS 156

Query: 408 ARKAWVVAGADDMFIR 455
               W+ + ADD  ++
Sbjct: 157 PDGKWLASAADDHTVK 172



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +3

Query: 225 DIKRK-----LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 389
           DI+RK         S+ V+     P   W+ S+    +V +W+     M+  F     PV
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 390 RSAKFIARKAWVVAGADDMFIR 455
              +F   +  + +G+ D  IR
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIR 214

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>KTNB1_BRARE (Q7ZUV2) Katanin p80 WD40-containing subunit B1 homolog|
          Length = 694

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I R L      + S D HP   ++ S     ++ +W+ + +  V  ++     VR   F 
Sbjct: 97  ILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFS 156

Query: 408 ARKAWVVAGADDMFIR 455
               W+ + +DD  ++
Sbjct: 157 PDGKWLASASDDSTVK 172

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>KTNB1_MOUSE (Q8BG40) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 658

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I R L      + S D HP   ++ S     ++ +W+ + +  V  +      VR  +F 
Sbjct: 97  ILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFS 156

Query: 408 ARKAWVVAGADDMFIR 455
               W+ + ADD  ++
Sbjct: 157 PDGKWLASAADDHTVK 172



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +3

Query: 225 DIKRK-----LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 389
           DI+RK         S+ V+     P   W+ S+    +V +W+     M+  F     PV
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 390 RSAKFIARKAWVVAGADDMFIR 455
              +F   +  + +G+ D  IR
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIR 214

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>KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 657

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I R L      + S D HP   ++ S      + +W+ + +  +  ++     VR  +F 
Sbjct: 96  ILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFS 155

Query: 408 ARKAWVVAGADDMFIR 455
               W+ + ADD  ++
Sbjct: 156 PDGKWLASAADDHTVK 171

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>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 226
           G P G   H P PT P+  SSS  S  GA P++    PVG
Sbjct: 245 GGPNGGKQHPP-PTTPISVSSSGAS--GAPPTKPPTTPVG 281

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>WSB2_MOUSE (O54929) WD repeat and SOCS box-containing protein 2 (WSB-2) (SOCS|
           box-containing WD protein SWiP-2)
          Length = 404

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
 Frame = +3

Query: 234 RKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTEL---------- 383
           RKL      V S D  P    ++++ Y  SV +W+  T   ++S   T+L          
Sbjct: 233 RKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGARLRSLHHTQLEPTMDDSDVH 292

Query: 384 --PVRSAKFIARKAWVVAGADDMFIR 455
              +RS  F     ++   ADD  +R
Sbjct: 293 MSSLRSVCFSPEGLYLATVADDRLLR 318

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>KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homolog 1|
          Length = 837

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I R L        S D HP   +  S     ++ IW+ + +  + +++     V   +F 
Sbjct: 93  IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFT 152

Query: 408 ARKAWVVAGADDMFIR 455
               WVV+G +D  ++
Sbjct: 153 PDGRWVVSGGEDNIVK 168

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>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1|
          Length = 1319

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 110 HPRGSASHA-PAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQV 268
           H  G++SHA PAP  PL  S +R + F  LPS  ++    +  E R    +G V
Sbjct: 177 HSSGASSHAVPAPCLPLDQSPNRAASFHGLPS--SSGSDSHSLEPRRVTNQGAV 228

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>TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-related|
           protein 6)
          Length = 581

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 PTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAW 422
           PTE W+L  L +G  C++N + +  V + +  +  +   KF     W
Sbjct: 478 PTEDWLLLGLANGQHCLFNSRKRDQVLTVDTKDNTILGLKFSPNGKW 524

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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 98  REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG--YQEEARAEVGEGQ 265
           R+AG   G    A AP  P G SSS G+   + P+R ++ PVG  Y    +AE  EG+
Sbjct: 427 RQAGFLDGPTGKA-APQLPRGPSSS-GADTNSTPNRSSSGPVGEIYAAREKAERAEGE 482

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>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 226
           G P G   H P PT P+  SSS  S  GA P++    PVG
Sbjct: 244 GGPNGGKQHPP-PTTPISVSSSGAS--GAPPTKPPTTPVG 280

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>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 690

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 407
           I R L      ++  D HP   ++ S     +V +W+ + +  + +++     V   KF 
Sbjct: 93  IVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFS 152

Query: 408 ARKAWVVAGADDMFIR 455
               W+V  ++D  I+
Sbjct: 153 PDGKWLVTASEDTTIK 168

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>MYO2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MYO2A) (Type V|
            myosin heavy chain MYO2A) (Myosin V MYO2A)
          Length = 1567

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 155  LGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFV 304
            LGT ++  +     PSR N  P G+   A   +   Q++   SD A D V
Sbjct: 1091 LGTVTTNTNIVPHTPSRENRMPSGHMRAAEENISPNQLKSIPSDTAADHV 1140

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>LIS1_CAEEL (Q9NDC9) Lissencephaly-1 homolog (Pronuclear migration abnormal|
           protein 1)
          Length = 404

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 225 DIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKF 404
           D+   L      V+    HP   +++S     ++ +W    Q  +K+ E  E  V +  F
Sbjct: 323 DVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAF 382

Query: 405 IARKAWVVAGADDM 446
                +V+ G+ DM
Sbjct: 383 HQTSPFVITGSVDM 396

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>WDR23_HUMAN (Q8TEB1) WD-repeat protein 23|
          Length = 546

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQ 344
           I +KL      V+    HP E  I+SS + G++ +W Y+
Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513

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>GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit|
          Length = 380

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 213 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQT 347
           P  L   R L   S +V S D  P + WI+S+   G + +WN  T
Sbjct: 53  PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97

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>GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit|
          Length = 380

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 213 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQT 347
           P  L   R L   S +V S D  P + WI+S+   G + +WN  T
Sbjct: 53  PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97

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>WDR23_MOUSE (Q91VU6) WD-repeat protein 23|
          Length = 549

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQ 344
           I +KL      V+    HP E  I+SS + G++ +W Y+
Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513

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>WDHD1_XENLA (O13046) WD repeat and HMG-box DNA-binding protein 1 (Acidic|
           nucleoplasmic DNA-binding protein 1) (And-1)
          Length = 1127

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 231 KRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTEL--PVRSAKF 404
           ++ L   S  V S    P + ++ S+   GSV IW    QT      + E    V +AK 
Sbjct: 129 QKTLRGHSAPVLSVSFDPKDIYLASASCDGSVRIWKISDQTCEAVLPLLEKCNDVFNAKS 188

Query: 405 IARKAW 422
           I R AW
Sbjct: 189 ICRLAW 194

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
 Frame = +2

Query: 113 PRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVG------------ 256
           P G    +  P   LG+   R   + A+P R   A   YQ +A  E+             
Sbjct: 527 PAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSI 586

Query: 257 ------EGQVRGSASDRAMDFVESLLGECLHLELPN-ADNGEII*SHRVTGSF 394
                 EGQV+G       D +E +       +  + +D  + +  H   GS+
Sbjct: 587 GEGGFWEGQVKGRVGWFPSDCLEEVANRSQESKQESRSDKAKRLFRHYTVGSY 639

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>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 226
           G P G   H P PT P+  SSS  S  GA P++    PVG
Sbjct: 246 GPPSGGKQHPP-PTTPIPISSSGAS--GAPPAKPPNTPVG 282

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>UVRC_CHLAB (Q5L553) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 604

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 298 FCRVFTRGVSASGTTKRRQW*NHLKSQSYRFVRLNLLHEKHGSLLVP 438
           FC  F +GV    T+K  Q+   L+ +++RF       ++H   L+P
Sbjct: 499 FCDTFPQGVLLPPTSKLLQFFQKLRDEAHRFALSRHRKKRHKDFLLP 545

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>PDE8B_HUMAN (O95263) High-affinity cAMP-specific and IBMX-insensitive|
           3',5'-cyclic phosphodiesterase 8B (EC 3.1.4.17)
           (HSPDE8B)
          Length = 885

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 101 EAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAP--VGYQEEARAEVGEGQVRG 274
           E+  PR + S +  P  PL     +     A+P    + P  V     AR E+G G   G
Sbjct: 22  ESSSPRQTTSVSQGPAAPLPGLFVQTDAADAIPPSRASGPPSVARVRRARTELGSGSSAG 81

Query: 275 SASDRA 292
           SA+  A
Sbjct: 82  SAAPAA 87

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>WSB2_HUMAN (Q9NYS7) WD repeat and SOCS box-containing protein 2 (WSB-2) (CS|
           box-containing WD protein)
          Length = 404

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
 Frame = +3

Query: 234 RKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTEL---------- 383
           RKL      V S D  P    ++++ Y  +V +W+  T   ++S   T++          
Sbjct: 233 RKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQVDPAMDDSDVH 292

Query: 384 --PVRSAKFIARKAWVVAGADDMFIR 455
              +RS  F     ++   ADD  +R
Sbjct: 293 ISSLRSVCFSPEGLYLATVADDRLLR 318

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>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)|
          Length = 743

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFE 371
           IK +L   +    +  + P      S    G++ +W+ Q QTMV+ F+
Sbjct: 539 IKAELTSSAPACYALAVSPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQ 586

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>GNB1L_HUMAN (Q9BYB4) Guanine nucleotide-binding protein beta subunit-like|
           protein 1 (G protein beta subunit-like protein 1) (WD40
           repeat-containing protein deleted in VCFS) (WDVCF
           protein) (DGCRK3)
          Length = 327

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 285 TEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGA 437
           + P +L+    GSV +W+   Q +       E PV    F ++KA  ++G+
Sbjct: 177 SRPLLLAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGISGS 227

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>UVRC_CHLCV (Q821V5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 605

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 298 FCRVFTRGVSASGTTKRRQW*NHLKSQSYRFVRLNLLHEKHGSLLVP 438
           FC  F +G+  + T+K  Q+   L+ +++RF       +++  LL P
Sbjct: 499 FCDTFPQGIQLAPTSKLLQFFQKLRDEAHRFAISKHRRKRYKDLLFP 545

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>SWD1_SCHPO (O42858) Set1 complex component swd1 (Set1C component swd1)|
           (COMPASS component swd1) (Complex proteins associated
           with set1 protein swd1)
          Length = 398

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +3

Query: 210 MPLRLDIKRKLAQRSERVKSADL----HPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377
           +P   DI    + R  R K   L    HP+  +ILS    G   + +  T  +  S  +T
Sbjct: 147 LPTNPDIDENYSDRRNRSKHVTLVSFFHPSGEYILSGTSKGWFHVIDASTTKIRSSHRIT 206

Query: 378 ELPVRSAKFIARKAWVVAGADDMFIR 455
              ++  +    K +++  + D  IR
Sbjct: 207 SQSIKQIRLSFCKRFLIFNSTDRVIR 232

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>HXD13_HETFR (Q9IA17) Homeobox protein Hox-D13|
          Length = 284

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 128 SHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMD 298
           S  PAPT+P   + S G  FG+  S ++   VG Q+          + G   D+ MD
Sbjct: 53  SPCPAPTSPPNPAISYGYHFGS--SYYSCRNVGIQQTGLKSGAHASLAGYPVDKYMD 107

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>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1)
          Length = 712

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASD 286
           GH   ++   P+P      SS+  +  GA P +  AAP G   +A  ++  G  +   SD
Sbjct: 530 GHSEAASCIPPSPQENSYVSSTGRAHSGAAPWQPLAAPSGASAQAAEQLQRGPNQPVESD 589

Query: 287 RAMDFVESLL 316
            ++  + + L
Sbjct: 590 ESLGGLSAAL 599

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>PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +3

Query: 240 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKA 419
           L   S++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 261 LKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHEGSVTGLSLHATGD 320

Query: 420 WVVAGADDMF 449
           ++++ +DD +
Sbjct: 321 YLLSSSDDQY 330

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>ALDH3_YEAST (P54114) Aldehyde dehydrogenase [NAD(P)+] 2 (EC 1.2.1.5)|
          Length = 506

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 264 KSADLHPTEPWILSSLY--SGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGA 437
           + ADL     W+ + ++  SG +C  N  ++  V+S  + +  V   K  A+K W VAG 
Sbjct: 279 EDADLDKAIEWVANGIFFNSGQICTAN--SRVYVQS-SIYDKFVEKFKETAKKEWDVAGK 335

Query: 438 DDMF 449
            D F
Sbjct: 336 FDPF 339

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>4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E transporter|
            (eIF4E transporter) (4E-T) (Eukaryotic translation
            initiation factor 4E nuclear import factor 1)
          Length = 985

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +2

Query: 92   VRREAGHPRGSASHAPA---PTNPLGTSSSRG-----SRFGALPSRHNAAPVG 226
            ++R   HP GS SHA A    T P    S  G     S+    PS+ +++PVG
Sbjct: 902  LQRSVLHPPGSGSHAAAVSVQTTPQNVPSRSGLPHMHSQLEHRPSQRSSSPVG 954

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>IL32_HUMAN (P24001) Interleukin-32 precursor (IL-32) (Natural killer cells|
           protein 4)
          Length = 234

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 194 LPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFVESLL 316
           L S+H A    Y +   AE G GQV  S ++   DF E  L
Sbjct: 61  LSSQHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYL 101

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>YTM1_YEAST (Q12024) Microtubule-associated protein YTM1|
          Length = 460

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V S D+      I+S  Y G V  W+       K +     P+R+ K+I+    V AG D
Sbjct: 106 VSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQ-KQYSGHSGPIRAVKYISNTRLVSAGND 164

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>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15|
          Length = 341

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 228 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWN 338
           I  +     +RVKS  ++P + +++++   GSVCIW+
Sbjct: 231 ILHEFTAHKKRVKS--VYPVDDYLITASSDGSVCIWD 265

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>PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Neuronal|
           differentiation-related gene protein)
          Length = 504

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +3

Query: 240 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKA 419
           L   +++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 260 LKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGD 319

Query: 420 WVVAGADDMF 449
           ++++ +DD +
Sbjct: 320 YLLSSSDDQY 329

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>PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear|
           matrix protein 200) (Nuclear matrix protein SNEV)
          Length = 504

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +3

Query: 240 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKA 419
           L   +++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 260 LKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGD 319

Query: 420 WVVAGADDMF 449
           ++++ +DD +
Sbjct: 320 YLLSSSDDQY 329

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>PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear|
           matrix protein 200) (hPso4)
          Length = 504

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +3

Query: 240 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKA 419
           L   +++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 260 LKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGD 319

Query: 420 WVVAGADDMF 449
           ++++ +DD +
Sbjct: 320 YLLSSSDDQY 329

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>WDHD1_HUMAN (O75717) WD repeat and HMG-box DNA-binding protein 1 (Acidic|
           nucleoplasmic DNA-binding protein 1) (And-1)
          Length = 1129

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTEL--PVRSAKFIARKAW 422
           V S    P + ++ S+   GSV +W    QT   S+ + +    V +AK I R AW
Sbjct: 139 VLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAW 194

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>PLRG1_RAT (Q9WUC8) Pleiotropic regulator 1|
          Length = 514

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V   DLHPT   +++     +  IW+ +T+  V +       V + +  A +  ++ G+ 
Sbjct: 291 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 350

Query: 441 DMFIR 455
           D  IR
Sbjct: 351 DTTIR 355

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>PLRG1_HUMAN (O43660) Pleiotropic regulator 1|
          Length = 514

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V   DLHPT   +++     +  IW+ +T+  V +       V + +  A +  ++ G+ 
Sbjct: 291 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 350

Query: 441 DMFIR 455
           D  IR
Sbjct: 351 DTTIR 355

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>CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 368

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 122 SASHAPAPTNPLGTSSSRGSRFGALPSRHNAAP 220
           S+SHAPA ++ +G S+  G+     P+  +AAP
Sbjct: 147 SSSHAPASSSSVGASARVGAGASPAPASTSAAP 179

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>YR154_MIMIV (Q5UPL6) Putative BTB/POZ domain and WD-repeat protein R154|
          Length = 468

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 297 ILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKF 404
           IL   ++G + IWN +  T+VKS ++ ++P+ S  +
Sbjct: 376 ILVGCHNGLMDIWNLKKLTLVKSTQLFDVPIISMTY 411

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>PLRG1_MOUSE (Q922V4) Pleiotropic regulator 1|
          Length = 513

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKAWVVAGAD 440
           V   DLHPT   +++     +  IW+ +T+  V +       V + +  A +  ++ G+ 
Sbjct: 290 VYGLDLHPTLDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 349

Query: 441 DMFIR 455
           D  IR
Sbjct: 350 DTTIR 354

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>GBLP_NEUCR (Q01369) Guanine nucleotide-binding protein beta subunit-like|
           protein (Cross-pathway control WD-repeat protein cpc-2)
          Length = 316

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +3

Query: 231 KRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIA 410
           KR+L   S  V    +     + LS+ +  ++ +W   T T  + F      V S  F A
Sbjct: 56  KRRLHGHSHIVSDCVISSDGAYALSASWDKTLRLWELSTGTTTRRFVGHTNDVLSVSFSA 115

Query: 411 RKAWVVAGADDMFIR 455
               +V+G+ D  I+
Sbjct: 116 DNRQIVSGSRDRTIK 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,827,172
Number of Sequences: 219361
Number of extensions: 923790
Number of successful extensions: 3514
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 3248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3509
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result