ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PP14C_HUMAN (Q8TAE6) Protein phosphatase 1 regulatory subunit 14... 32 1.2
2K1C12_HUMAN (Q99456) Keratin, type I cytoskeletal 12 (Cytokerati... 30 3.5
3INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finge... 29 7.8

>PP14C_HUMAN (Q8TAE6) Protein phosphatase 1 regulatory subunit 14C|
           (PKC-potentiated PP1 inhibitory protein)
           (Kinase-enhanced PP1 inhibitor) (Serologically defined
           breast cancer antigen NY-BR-81)
          Length = 165

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -1

Query: 182 VQSDAKKTAGTASRGGARFCFRSPGGG 102
           V + + +TAG AS GGAR  F+SP GG
Sbjct: 3   VATGSSETAGGASGGGARVFFQSPRGG 29



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>K1C12_HUMAN (Q99456) Keratin, type I cytoskeletal 12 (Cytokeratin-12) (CK-12)|
           (Keratin-12) (K12)
          Length = 494

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 140 GGARFCFRSPGGGGISAVLMRALRRDMGDGRASERARGDGCG 15
           GG+ F F +  GGG SA  M       G G  S  A G G G
Sbjct: 43  GGSAFGFGASCGGGFSAASMFGSSSGFGGGSGSSMAGGLGAG 84



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>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 521

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/55 (27%), Positives = 19/55 (34%)
 Frame = +1

Query: 7   PIPPQPSPLXXXXXXXXXXXXXXXXXXTAEIPPPPGERKQNLAPPRLAVPAVFFA 171
           P+PP P P                       PPPPG R  +   P  A PA  ++
Sbjct: 50  PLPPPPPPALAERAHAALAAALACAPGPPP-PPPPGPRAAHFGNPEAAHPAPLYS 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,262,459
Number of Sequences: 219361
Number of extensions: 656556
Number of successful extensions: 2378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2345
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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