>HEM2_RHOCA (P42504) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)|
           (Porphobilinogen synthase) (ALAD) (ALADH)
          Length = 332

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 113 NMAGKSKGARNKAKAQAASQDAVSVEPAVPVTDVVEEAKPENGEVT 250
           N A  ++  RN A+  A   D V V+P +P  D+V + K   G  T
Sbjct: 231 NPANSAEALRNVARDIAEGADMVMVKPGMPYLDIVRQVKDAFGMPT 276

>INO80_ASHGO (Q74Z27) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1414

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 89  RGASAGGRNMAGKSKGARNKAKAQAASQDAVSVEPAVPVTDVVEEAKPEN 238
           +G  A  R  A K K A N A A ++S+D    E A PV   V    P N
Sbjct: 338 QGNLAKRRKTAQKQKPAANGAPAASSSEDVTVTEAATPVPAKVNGEAPSN 387

>VLPE_MYCHR (Q49537) Variant surface antigen E precursor (VLPE prolipoprotein)|
          Length = 243

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 98  SAGGRNMAGKSKGARNKAKAQAASQDAVSVEPAVPVTDVVEEAKPENGEVTD 253
           S+GG N +G + G    + +  ++ D     P+ P T   +E+ P N   +D
Sbjct: 70  SSGGTNQSGSASG-NGSSNSSVSTPDGQHSNPSNPTTSDPKESNPSNPTTSD 120

>IDH3B_RAT (Q68FX0) Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial|
           precursor (EC 1.1.1.41) (Isocitric dehydrogenase)
           (NAD(+)-specific ICDH)
          Length = 385

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 95  ASAGGRNMAGKSKGARNKAKAQAASQDA---VSVEPAVPVT 208
           A  G RN +G  +G R  A AQAASQ     V VE A PVT
Sbjct: 13  AVLGARN-SGAWRGLRTAASAQAASQSQAQDVRVEGAFPVT 52

>PSD_MYCPA (Q73SZ2) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 240

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 241 PVLGLGLLHHISDR-HRRLHRDGILAGGLCLG 149
           P +G GL   ++ R HR L R G+LA G C G
Sbjct: 39  PFVGAGLALALAGRRHRWLRRAGLLAAGACAG 70

>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex|
           protein Nup358) (Nucleoporin Nup358) (358 kDa
           nucleoporin) (P270) (Fragment)
          Length = 1085

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 98  SAGGRNMAGKSKGARNKAKA-QAASQDAVSVEPAVPVTDVVEEAKPENGE 244
           S G  N +G S G    +   Q   +D    EP VP+ D+VE +  E  E
Sbjct: 145 SPGKLNQSGASVGTDEDSDVTQEEERDGQHFEPVVPLPDLVEVSSGEENE 194

>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 89  RGASAGGRNMAGKSKGARNKAKAQAASQDAVSVEPAVPVTDVVEEAKPENGEV 247
           RGAS G  N      G R   +      +  +      +T  V + KPE GEV
Sbjct: 243 RGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEV 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.129    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,561,820
Number of Sequences: 219361
Number of extensions: 377005
Number of successful extensions: 1215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)