ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 125 7e-26
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
4dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
5gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
6gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
8dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
9dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
10dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
11dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
13ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA ... 40 3.1
14gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.1
15gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 3.1

>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  125 bits (63), Expect = 7e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                       
Query: 148 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305

                                              
Query: 208 cgtcatggcgaatgagatcaaggcggatctggagg 242
           || ||||||   |||||||||||||||||| ||||
Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagg 340



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 7e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                            
Query: 148      cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
                |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919

                                                   
Query: 208      cgtcatggcgaatgagatcaaggcggatctggagg 242
                || ||||||   |||||||||||||||||| ||||
Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagg 10025884



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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  125 bits (63), Expect = 7e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                          
Query: 148    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201

                                                 
Query: 208    cgtcatggcgaatgagatcaaggcggatctggagg 242
              || ||||||   |||||||||||||||||| ||||
Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagg 106166



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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  125 bits (63), Expect = 7e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                          
Query: 148    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412

                                                 
Query: 208    cgtcatggcgaatgagatcaaggcggatctggagg 242
              || ||||||   |||||||||||||||||| ||||
Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagg 120377



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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 158   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
             |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373

                           
Query: 218   aatgagatcaaggc 231
             || |||||||||||
Sbjct: 21372 aacgagatcaaggc 21359



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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                          
Query: 158    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
              |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838

                            
Query: 218    aatgagatcaaggc 231
              || |||||||||||
Sbjct: 170837 aacgagatcaaggc 170824



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                           
Query: 158     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
               |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701

                             
Query: 218     aatgagatcaaggc 231
               || |||||||||||
Sbjct: 3653700 aacgagatcaaggc 3653687



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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                         
Query: 218 aatgagatcaaggc 231
           || |||||||||||
Sbjct: 171 aacgagatcaaggc 184



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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                         
Query: 218 aatgagatcaaggc 231
           || |||||||||||
Sbjct: 171 aacgagatcaaggc 184



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>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134

                         
Query: 218 aatgagatcaaggc 231
           || |||||||||||
Sbjct: 135 aacgagatcaaggc 148



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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201

                         
Query: 218 aatgagatcaaggc 231
           || |||||||||||
Sbjct: 202 aacgagatcaaggc 215



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                           
Query: 158     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgtcatggcg 217
               |||||||| ||||| ||||| || || ||||||||||||||||||||| ||  |||||| 
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395

                             
Query: 218     aatgagatcaaggc 231
               || |||||||||||
Sbjct: 3662394 aacgagatcaaggc 3662381



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>ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA synthetase,
           (PC001076.02.0) partial mRNA
          Length = 1623

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   tacaactatttttcagttgg 21
           ||||||||||||||||||||
Sbjct: 163 tacaactatttttcagttgg 144



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    cgccgtcgccctccggcgcg 138
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250



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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     gatcaaggcggatctggagg 242
               ||||||||||||||||||||
Sbjct: 1763887 gatcaaggcggatctggagg 1763868


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,225,095
Number of Sequences: 3902068
Number of extensions: 1225095
Number of successful extensions: 20910
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20793
Number of HSP's gapped (non-prelim): 117
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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