Clone Name | bastl31b09 |
---|---|
Clone Library Name | barley_pub |
>VPP1_PONPY (Q5R422) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) Length = 837 Score = 82.0 bits (201), Expect = 6e-16 Identities = 40/86 (46%), Positives = 59/86 (68%) Frame = +1 Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMS 348 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC EM Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 349 RKLRFFKEQMSKAGIQVPPMQSTETP 426 RKLRF ++++ KA I P M + E P Sbjct: 63 RKLRFVEKEIRKANI--PIMDTGENP 86
>VPP1_HUMAN (Q93050) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 837 Score = 82.0 bits (201), Expect = 6e-16 Identities = 40/86 (46%), Positives = 59/86 (68%) Frame = +1 Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMS 348 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC EM Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 349 RKLRFFKEQMSKAGIQVPPMQSTETP 426 RKLRF ++++ KA I P M + E P Sbjct: 63 RKLRFVEKEIRKANI--PIMDTGENP 86
>VPP1_MOUSE (Q9Z1G4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 839 Score = 82.0 bits (201), Expect = 6e-16 Identities = 40/86 (46%), Positives = 59/86 (68%) Frame = +1 Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMS 348 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC EM Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 349 RKLRFFKEQMSKAGIQVPPMQSTETP 426 RKLRF ++++ KA I P M + E P Sbjct: 63 RKLRFVEKEIRKANI--PIMDTGENP 86
>VPP1_BOVIN (Q29466) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 838 Score = 82.0 bits (201), Expect = 6e-16 Identities = 40/86 (46%), Positives = 59/86 (68%) Frame = +1 Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMS 348 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC EM Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 349 RKLRFFKEQMSKAGIQVPPMQSTETP 426 RKLRF ++++ KA I P M + E P Sbjct: 63 RKLRFVEKEIRKANI--PIMDTGENP 86
>VPP1_CAEEL (P30628) Probable vacuolar proton translocating ATPase 116 kDa| subunit a (Uncoordinated protein 32) Length = 905 Score = 79.3 bits (194), Expect = 4e-15 Identities = 37/89 (41%), Positives = 59/89 (66%) Frame = +1 Query: 160 PSMDLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCA 339 P + RSE M L Q+ + +++++ V+ LG+LGL+QF+DLN D S FQR Y +++RC Sbjct: 12 PQPGIYRSEQMCLAQLYLQSDASYQCVAELGELGLVQFRDLNPDVSSFQRKYVNEVRRCD 71 Query: 340 EMSRKLRFFKEQMSKAGIQVPPMQSTETP 426 EM RKLR+ + ++ K Q+P + + E P Sbjct: 72 EMERKLRYLEREIKKD--QIPMLDTGENP 98
>VPP1_RAT (P25286) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase su Length = 838 Score = 79.0 bits (193), Expect = 5e-15 Identities = 39/86 (45%), Positives = 58/86 (67%) Frame = +1 Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMS 348 +L RSE M L Q+ + +E+A+ VS L +LG +QF+DLN D + FQR + +++RC EM Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 349 RKLRFFKEQMSKAGIQVPPMQSTETP 426 RKLRF ++++ KA I P M + E P Sbjct: 63 RKLRFVEKEIRKANI--PIMDTGENP 86
>VPP3_HUMAN (Q13488) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 3 (V-ATPase 116-kDa isoform a3) (Osteoclastic proton pump 116 kDa subunit) (OC-116 kDa) (OC116) (T-cell immune regulator 1) (T cell immune response cDNA7 protein) (TIRC7) Length = 830 Score = 78.6 bits (192), Expect = 7e-15 Identities = 33/78 (42%), Positives = 54/78 (69%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 + RSE + L+Q+ +PT +A+ VS LG+LGL++F+DLNA S FQR + + RC E+ + Sbjct: 4 MFRSEEVALVQLFLPTAAAYTCVSRLGELGLVEFRDLNASVSAFQRRFVVDVWRCEELEK 63 Query: 352 KLRFFKEQMSKAGIQVPP 405 F +E++ +AG+ +PP Sbjct: 64 TFTFLQEEVRRAGLVLPP 81
>VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform) Length = 833 Score = 77.8 bits (190), Expect = 1e-14 Identities = 37/86 (43%), Positives = 56/86 (65%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 + RSE M L QV + E+A+ V+ LG+LGL+QFKDLNA+ + FQR + +++RC + R Sbjct: 4 VFRSEEMCLSQVFLQVEAAYCCVAELGELGLVQFKDLNANVNSFQRKFVNEVRRCESLER 63 Query: 352 KLRFFKEQMSKAGIQVPPMQSTETPL 429 LRF +++M + P + ETPL Sbjct: 64 ILRFLEDEMQNEILIQVPEKDAETPL 89
>VPP4_HUMAN (Q9HBG4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform) Length = 840 Score = 69.3 bits (168), Expect = 4e-12 Identities = 34/86 (39%), Positives = 54/86 (62%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 + RSE M L Q+ + E+A+ V+ LG+LGL+QFKDLN + + FQR + +++RC + R Sbjct: 4 VFRSEEMCLSQLFLQVEAAYCCVAELGELGLVQFKDLNMNVNSFQRKFVNEVRRCESLER 63 Query: 352 KLRFFKEQMSKAGIQVPPMQSTETPL 429 LRF +++M + +S TPL Sbjct: 64 ILRFLEDEMQNEIVVQLLEKSPLTPL 89
>VPP2_MOUSE (P15920) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (Immune suppressor factor J6B7) Length = 856 Score = 67.8 bits (164), Expect = 1e-11 Identities = 31/77 (40%), Positives = 53/77 (68%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 L RSE+M L Q+ + + +A+ +S LG+ GL+QF+DLN + S FQR + ++KRC E+ R Sbjct: 4 LFRSESMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELER 63 Query: 352 KLRFFKEQMSKAGIQVP 402 L + +++++A I +P Sbjct: 64 ILVYLVQEITRADIPLP 80
>VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (TJ6) Length = 856 Score = 67.4 bits (163), Expect = 2e-11 Identities = 31/77 (40%), Positives = 52/77 (67%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 L RSE M L Q+ + + +A+ +S LG+ GL+QF+DLN + S FQR + ++KRC E+ R Sbjct: 4 LFRSETMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELER 63 Query: 352 KLRFFKEQMSKAGIQVP 402 L + +++++A I +P Sbjct: 64 ILVYLVQEINRADIPLP 80
>VPP2_BOVIN (O97681) Vacuolar proton translocating ATPase 116 kDa subunit A| isoform 2 (V-ATPase 116-kDa isoform a2) Length = 854 Score = 66.6 bits (161), Expect = 3e-11 Identities = 30/77 (38%), Positives = 52/77 (67%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 L RSE M L Q+ + + +A+ +S LG+ GL++F+DLN + S FQR + ++KRC E+ R Sbjct: 4 LFRSETMCLAQLFLQSGTAYECLSVLGEKGLVEFRDLNQNVSSFQRKFVGEVKRCEELER 63 Query: 352 KLRFFKEQMSKAGIQVP 402 L + +++++A I +P Sbjct: 64 ILAYLVQEINRADIPLP 80
>VPH1_NEUCR (Q01290) Vacuolar ATP synthase 98 kDa subunit (Vacuolar ATPase 98| kDa subunit) Length = 856 Score = 65.1 bits (157), Expect = 8e-11 Identities = 33/85 (38%), Positives = 51/85 (60%) Frame = +1 Query: 178 RSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSRKL 357 RS M ++Q+ I E + LG+LGL+ F+DLN++ S FQR + I+R + R+L Sbjct: 10 RSADMSMVQLYISNEIGREVCNALGELGLVHFRDLNSELSAFQRAFTQDIRRLDNVERQL 69 Query: 358 RFFKEQMSKAGIQVPPMQSTETPLD 432 R+F QM KAGI P++ + +D Sbjct: 70 RYFHSQMEKAGI---PLRKFDPDVD 91
>VPH1_YEAST (P32563) Vacuolar ATP synthase subunit a, vacuolar isoform (EC| 3.6.3.14) (V-ATPase a subunit) (Vacuolar proton pump a subunit) (V-ATPase 95 kDa subunit) (Vacuolar pH protein 1) Length = 839 Score = 57.8 bits (138), Expect = 1e-08 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 + RS M L+Q IP E + + LG LGL+QF+DLN+ FQRT+ +I+R + R Sbjct: 7 IFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIRRLDNVER 66 Query: 352 KLRFFKEQMSKAGIQV 399 + R+F + K I++ Sbjct: 67 QYRYFYSLLKKHDIKL 82
>VPH1_SCHPO (O13742) Probable vacuolar ATP synthase 91 kDa subunit (Vacuolar| ATPase 91 kDa subunit) Length = 805 Score = 48.9 bits (115), Expect = 6e-06 Identities = 23/55 (41%), Positives = 33/55 (60%) Frame = +1 Query: 238 VSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSRKLRFFKEQMSKAGIQVP 402 +S LG+L I FKDLN D FQR++ +I+R + R LR+ ++ GI VP Sbjct: 1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVP 55
>STV1_YEAST (P37296) Vacuolar ATP synthase subunit a, Golgi isoform (EC| 3.6.3.14) (V-ATPase 101 kDa subunit) (V-ATPase subunit AC115) (Similar to VPH1 protein 1) Length = 890 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/71 (33%), Positives = 35/71 (49%) Frame = +1 Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSR 351 + RS M +Q+ IP E LG + + DLN D + FQR Y Q++R E+ R Sbjct: 7 IFRSADMTYVQLYIPLEVIREVTFLLGKMSVFMVMDLNKDLTAFQRGYVNQLRRFDEVER 66 Query: 352 KLRFFKEQMSK 384 + F E + K Sbjct: 67 MVGFLNEVVEK 77
>ARHG2_MOUSE (Q60875) Rho/Rac guanine nucleotide exchange factor 2 (Lymphoid| blast crisis-like 1) (LBC'S first cousin) (Oncogene LFC) (RHOBIN) Length = 596 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = +1 Query: 202 QVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSRKLRFFKE 372 Q + P + + + LGDL + QF NA++ ++TY+ + C+ ++ L+ +KE Sbjct: 304 QALCPGSTRNFVIHRLGDLLISQFSGSNAEQ--MRKTYS---EFCSRHTKALKLYKE 355
>FLCN_BOVIN (Q3B7L5) Folliculin| Length = 579 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 300 RAFVCVEVFELDEAQIAEVGDGEVRGLGGDND---LQELHRLRPHQIHRGAAAPSAA 139 R C EV Q A GDG RG D + +Q R+R H GA+A S++ Sbjct: 17 RTLFCTEVLHAPLPQGAGSGDGAGRGEPADEEEGGIQMSSRIRAHSPAEGASAESSS 73
>TGT_PASMU (P57831) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 385 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 244 HLGDLGLIQFKDLNADKS-PFQRTYAAQIKRCAEMSRKLRFFKEQMSKAGIQVPPMQS 414 HL G I LN + + + AQI++ E R F +E +K G VPPMQS Sbjct: 321 HLDKCGEILGARLNTIHNLRYYQRLMAQIRQAIEEDRFEAFVQEFYAKMGKPVPPMQS 378
>ASA1_ENTFA (P17953) Aggregation substance precursor| Length = 1296 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = +1 Query: 253 DLGLIQFKDLNADKSPFQRTYAAQIKRCAEMSRKLRFFKEQMSKAGIQVPPMQSTE 420 DLG + KDL A + + Q K+ A+ + +L+ E+++K ++ E Sbjct: 189 DLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQAAELKAKNEKIAKENAEIAAKNKAE 244
>PSB4_SCHPO (Q9USQ9) Probable proteasome subunit beta type 4 (EC 3.4.25.1)| Length = 262 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -2 Query: 327 DLCSVGALKRAFVCVEVFELDEAQIAEVGDGEVRGLGGD-NDLQELHRL 184 +L S G+L R + D ++ +VGD + G GGD +D Q++ RL Sbjct: 61 NLASYGSLARFY--------DVERLTKVGDNTIVGAGGDISDYQQIQRL 101
>GIDA_XYLFT (Q87DB3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = +1 Query: 235 AVSHLGDLGLIQFKDLNADKSPFQRT---------YAAQIKRCAEMSRKLRFFKEQM 378 A++H D IQ++ LNA K P R Y A I++ E +L F+ ++ Sbjct: 70 AMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEV 126
>GIDA_XYLFA (Q9PBN4) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = +1 Query: 235 AVSHLGDLGLIQFKDLNADKSPFQRT---------YAAQIKRCAEMSRKLRFFKEQM 378 A++H D IQ++ LNA K P R Y A I++ E +L F+ ++ Sbjct: 70 AMAHAADAAGIQWRTLNASKGPAVRATRCQADRALYRAAIRQMIEGQARLNIFQAEV 126
>GIDA_XANOR (Q5H6D9) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1 Query: 235 AVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKR 333 A++H DL IQ++ LNA K P R Q R Sbjct: 70 AMAHAADLAGIQWRTLNASKGPAVRATRCQADR 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,094,801 Number of Sequences: 219361 Number of extensions: 850165 Number of successful extensions: 2609 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2558 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2608 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)