ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31b08 |
|---|---|
| Clone Library Name | barley_pub |
>KCNC4_HUMAN (Q03721) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) (KSHIIIC) Length = 635 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/43 (41%), Positives = 19/43 (44%) Frame = -2 Query: 130 SPLLLKPRTRARALTDPPGAGTPGRAGEECGAHWLSMGGGFRF 2 S L P TR L DP G G P G G+ S GGG F Sbjct: 52 STLRTLPGTRLAWLADPDGGGRPETDGGGVGSSGSSGGGGCEF 94
>LSM4_ORYSA (Q9LGE6) Probable U6 snRNA-associated Sm-like protein LSm4| Length = 147 Score = 30.0 bits (66), Expect = 2.5 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Frame = -2 Query: 268 GSKFTRW-----KARTFASLAAPNYLIRHGSIQAEKSQEQASKSRQDRGKSSPLLLKPRT 104 G KF R + T L P+ +I +K QE+ SKSR DR P + + R Sbjct: 50 GDKFWRMPECYIRGNTIKYLRVPDEVI-------DKVQEETSKSRSDR--RPPGVGRGRG 100 Query: 103 RARALTDPPGAGTPGRAGEECGAHWLSMGGGFR 5 R T P G G GR ++ G S GGG R Sbjct: 101 RGDIGTKPGGRGI-GRGQDDGG----SKGGGGR 128
>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1| kinase) (SAD1A) Length = 794 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -2 Query: 184 AEKSQEQASKSRQDRGKSSPLLLKPRTRARALTDPPGAGTPGRAG 50 A+ SQ S S G SS L PR+ + + PGAG R G Sbjct: 440 AQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEARGG 484
>KCNC4_RAT (Q63734) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) (Raw3) Length = 625 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = -2 Query: 130 SPLLLKPRTRARALTDPPGAGTPGRAGEECGAHWLSMGGG 11 S L P TR L DP G G P G G+ S GGG Sbjct: 52 STLRTLPGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGG 91
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 29.3 bits (64), Expect = 4.2 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 12/74 (16%) Frame = -2 Query: 199 HGSIQAE----KSQEQASKSRQDRGKSSPLLLKPRTRARALTDPPGAGTPGRA------- 53 H ++ AE + Q+Q + +Q + S+ L L P R LT PG PG Sbjct: 3313 HTNLMAEYRNKQQQQQQQQQQQQQQHSAVLALSPSQSPRLLTKLPGQLLPGHGLQPPQGP 3372 Query: 52 -GEECGAHWLSMGG 14 G + G L+ GG Sbjct: 3373 PGGQAGGLRLTPGG 3386
>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) Length = 628 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = -2 Query: 130 SPLLLKPRTRARALTDPPGAGTPGRAGEECGAHWLSMGGG 11 S L P TR L DP G G P G G+ S GGG Sbjct: 52 STLRTLPGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGG 91
>RPA1_YEAST (P10964) DNA-directed RNA polymerase I 190 kDa polypeptide (EC| 2.7.7.6) (A190) Length = 1664 Score = 29.3 bits (64), Expect = 4.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 340 PQTGRSTRGLKDDHLVASIW*M*RGSKFTR 251 P +G RGL DH+ A +W + S FTR Sbjct: 660 PTSGSPVRGLIQDHISAGVWLTSKDSFFTR 689
>CHEB_IDILO (Q5QZQ3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 386 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -2 Query: 178 KSQEQASKSRQDRGKSSPLLLKPRTRARALTDPPGAGTPGRAGE 47 +++++A K+ QDR + RT ARA T PP A P R+ E Sbjct: 113 RNRDEAVKTLQDRVIAIARQPVSRTSARASTPPPVAKQPERSSE 156
>TRA2_CAEEL (P34709) Sex-determining transformer protein 2 precursor (Ce-Tra-2)| Length = 1475 Score = 25.0 bits (53), Expect(2) = 5.1 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 13/39 (33%) Frame = -1 Query: 383 SAAWNVPGSAPTTRTT-------------DWEEHEGPEG 306 SAAWN PGS D++EH+G EG Sbjct: 1216 SAAWNGPGSTLEQNMNALEECFELGVDEYDFDEHDGDEG 1254 Score = 22.3 bits (46), Expect(2) = 5.1 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = -2 Query: 193 SIQAEKSQEQASKSRQDRGKSSPLLLKPRTRARALTDPP 77 ++ EKS+E+ S+S++++ S P T A D P Sbjct: 1292 NLDKEKSEEKISESKKNQDDSIESPNLPGTPANLPVDEP 1330
>PERT_CANFA (Q8HYB7) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 933 Score = 28.9 bits (63), Expect = 5.5 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Frame = -3 Query: 261 SSPGGKQEXXXXXXXPTTSSGTGRSKRRNLKNRLANHGKIEESPRLCSSSRA-----RAP 97 ++P + +T G+ + + L+N + G + + R + RA R P Sbjct: 308 ANPRQQMNGLTSFLDASTVYGSSPALEKQLRNWTSAEGLLRVNTRHWDAGRAHLPFMRPP 367 Query: 96 AP*QIHPVPGRRGELGRSVELTG 28 AP P PG RG G L G Sbjct: 368 APLACVPEPGTRGTAGAPCFLAG 390
>RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1| Length = 893 Score = 28.9 bits (63), Expect = 5.5 Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = +2 Query: 218 GSQGSKGSCFPPGELTT--SLHSPDRCYQVIILQAPRAPPSLWSGLWVLIQGRSTPPTCR 391 GS G GS PP E+TT L S R Q P PP W L+ R PP Sbjct: 348 GSLG--GSLAPPREVTTFKELRSRSRA------QPPPVPPRDPPAGWALVPPRPPPPPVP 399 Query: 392 SRQAK 406 R+ K Sbjct: 400 PRRKK 404
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 12 PPPILSQ*APHSSPARPGVPAP 77 PPP L PH+ P PGVP P Sbjct: 561 PPPPLYPPPPHTLPLPPGVPPP 582
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 12 PPPILSQ*APHSSPARPGVPAP 77 PPP L PH+ P PGVP P Sbjct: 560 PPPPLYPPPPHTLPLPPGVPPP 581
>BXE_CLOBO (Q00496) Botulinum neurotoxin type E precursor (EC 3.4.24.69)| (BoNT/E) (Bontoxilysin E) [Contains: Botulinum neurotoxin E light chain; Botulinum neurotoxin E heavy chain] Length = 1250 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -2 Query: 214 NYLIRHGSIQAEKSQEQASKSRQDRGKSSPLLLKPRTRARAL 89 NY+I+HGSI E QE S S P L T + L Sbjct: 794 NYIIQHGSILGESQQELNSMVTDTLNNSIPFKLSSYTDDKIL 835
>ZN575_MACFA (Q9GM03) Zinc finger protein 575| Length = 260 Score = 28.5 bits (62), Expect = 7.2 Identities = 20/52 (38%), Positives = 23/52 (44%) Frame = -1 Query: 221 CPQLPHQARVDPSGEISRTG*QITAR*RKVLASAPQAAHARPRPDRSTRCRD 66 CP PHQ P + S++ TA ASAP RP P R RC D Sbjct: 39 CPPAPHQG---PLQKPSQSAPGPTAS-----ASAPPRPRRRPPPQRPHRCPD 82
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 295 PSDHPSGPSCSSQSVVRVVGADPGTFHAADLPESAGQGPVDLVPP 429 PS S P+ SS S GTF A + + + GP+ PP Sbjct: 532 PSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPPP 576
>PHYL_DROME (Q27934) Protein phyllopod| Length = 400 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -2 Query: 262 KFTRWKARTFASLAAPNYLIRHGSIQAEKSQEQASKSRQDRGKSSPLLLKPRTRAR 95 KF F + N+LI S+QA S E S+S+ + +L + RT+ R Sbjct: 60 KFQPLNEDKFLCFSCNNWLINWHSLQAVNSNEAESQSQSPSHMGNSVLQQERTKLR 115
>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 263 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -2 Query: 415 PQDLGLPTPASRRRGTSLDQHPQPGPQTGRST 320 P+ + A + T + + PQPGPQ+GR T Sbjct: 208 PETIKQVLSALKESVTDVSKAPQPGPQSGRQT 239
>Y231_METTH (O26333) Putative methyltransferase MTH231 (EC 2.1.1.-)| Length = 242 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -3 Query: 69 GRRGELGRSVELTGSVWVGDF 7 GRRG+LGRS E+ S+ G+F Sbjct: 127 GRRGDLGRSPEVDRSIHEGEF 147
>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 581 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = -2 Query: 244 ARTFASLAAPNYLIRHGSIQAEKSQEQASKSRQDRGKSSPLLLKPRTRARALTDPPGAGT 65 ART ++ A+P G+ S QAS ++ + P P + A T PPG + Sbjct: 12 ARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGT-PPGRAS 70 Query: 64 PGRA 53 PGRA Sbjct: 71 PGRA 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,764,833 Number of Sequences: 219361 Number of extensions: 1619023 Number of successful extensions: 5684 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5682 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
