Clone Information

BLAST Search Result

Clone Name	bastl31b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/S...	35	0.099
2	BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 prec...	33	0.29
3	CEBPA_HUMAN (P49715) CCAAT/enhancer-binding protein alpha (C/EBP...	27	0.45
4	DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)	33	0.49
5	RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated pro...	32	0.64
6	RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated p...	32	0.64
7	RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated p...	32	0.64
8	ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)	32	0.64
9	LAS17_YEAST (Q12446) Proline-rich protein LAS17	32	0.83
10	GPR64_HUMAN (Q8IZP9) G-protein coupled receptor 64 precursor (Ep...	32	1.1
11	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	31	1.9
12	RCOR2_RAT (Q5FWT8) REST corepressor 2	30	2.4
13	RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)	30	2.4
14	RCOR2_HUMAN (Q8IZ40) REST corepressor 2	30	2.4
15	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	30	2.4
16	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	30	2.4
17	Y369_TREPA (O83384) Hypothetical protein TP0369 precursor	30	3.2
18	Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region	30	3.2
19	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	30	4.1
20	ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing prote...	30	4.1
21	WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)	30	4.1
22	WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family mem...	30	4.1
23	BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO d...	30	4.1
24	SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Fo...	24	4.9
25	SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-a...	29	5.4
26	CAP2_DICDI (P34122) CABP1-related protein p31/p34	29	5.4
27	CAPU_DROME (Q24120) Protein cappuccino	25	6.5
28	PRP28_ASPFU (Q4WPE9) Pre-mRNA splicing ATP-dependent RNA helicas...	29	7.1
29	GPNMB_MOUSE (Q99P91) Transmembrane glycoprotein NMB precursor (D...	29	7.1
30	ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atr...	29	7.1
31	VPS54_YEAST (Q12071) Vacuolar protein sorting protein 54 (CPF1 g...	29	7.1
32	MURD_XANCP (Q8P775) UDP-N-acetylmuramoylalanine--D-glutamate lig...	29	7.1
33	MURD_XANC8 (Q4UWX9) UDP-N-acetylmuramoylalanine--D-glutamate lig...	29	7.1
34	WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family mem...	29	7.1
35	CN155_HUMAN (Q5H9T9) Protein C14orf155	29	7.1
36	SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-a...	29	7.1
37	ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr...	29	7.1
38	CIC_MOUSE (Q924A2) Protein capicua homolog	23	8.1
39	SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) ...	28	9.2
40	ZYX_MOUSE (Q62523) Zyxin	28	9.2
41	Y310_HALSA (Q9HSB6) UPF0245 protein Vng0310c	28	9.2
42	RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated p...	28	9.2
43	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	28	9.2
44	PRD10_HUMAN (Q9NQV6) PR domain zinc finger protein 10 (PR domain...	28	9.2
45	PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)	28	9.2
46	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	28	9.2
47	PDCD7_HUMAN (Q8N8D1) Programmed cell death protein 7 (ES18) (HES18)	28	9.2
48	ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: ...	28	9.2
49	TIMP4_MOUSE (Q9JHB3) Metalloproteinase inhibitor 4 precursor (TI...	28	9.2
50	PDC1_MAIZE (P28516) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1...	28	9.2
51	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	9.2
52	SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) ...	28	9.2
53	PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D...	28	9.2

>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex|
           component SNF5) (Transcription factor TYE4)
          Length = 905

 Score = 35.0 bits (79), Expect = 0.099
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*T-LAPPPIGLQPAL 140
           P  S P   + A  TPPPP    + HPQ+    LAP PI L P +
Sbjct: 84  PQQSQPIANQSATSTPPPPPAPHNLHPQIGQVPLAPAPINLPPQI 128

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>BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 precursor|
          Length = 1584

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +3

Query: 3    RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPA 137
            R P +  P  A PAQ  PPPP     P   L     PPP  L+PA
Sbjct: 1396 RQPPSGGPPEAPPAQPPPPPPPPPPPPQQPL-----PPPPNLEPA 1435

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>CEBPA_HUMAN (P49715) CCAAT/enhancer-binding protein alpha (C/EBP alpha)|
          Length = 358

 Score = 26.6 bits (57), Expect(2) = 0.45
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 39  PAQITPPPPENFRSPHPQLA*TLAP 113
           P Q  PPPP +   PHP  A   AP
Sbjct: 180 PYQPPPPPPPSHPHPHPPPAHLAAP 204



 Score = 25.0 bits (53), Expect(2) = 0.45
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 104 PSPSPHRPPAGASFGLPHGG 163
           P PSPH  PA  + GLP  G
Sbjct: 231 PVPSPHPAPALGAAGLPGPG 250

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>DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)|
          Length = 830

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 6   HPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           HP+  SP + RPA   P PP   ++P P      APPP G++P
Sbjct: 759 HPSGPSP-VPRPA---PAPPGGRQAPMPPRGGPGAPPPPGMRP 797

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>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
          Length = 240

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           A +PT   P + TPPPP    +P P +   +APPP G++P +
Sbjct: 162 AGAPTQYPPGRGTPPPPVGRATPPPGI---MAPPP-GMRPPM 199

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>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           A +PT   P + TPPPP    +P P +   +APPP G++P +
Sbjct: 162 AGAPTQYPPGRGTPPPPVGRATPPPGI---MAPPP-GMRPPM 199

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>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           A +PT   P + TPPPP    +P P +   +APPP G++P +
Sbjct: 162 AGAPTQYPPGRGTPPPPVGRATPPPGI---MAPPP-GMRPPM 199

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>ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)|
          Length = 572

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA 98
           P A    + R  +I PPPPE+F  P P LA
Sbjct: 50  PGAQRAQMGRVGEIPPPPPEDFPLPPPPLA 79

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>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 24  PTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPA 137
           PT+       PPPP  F +  PQ     APPP    PA
Sbjct: 493 PTLPSTTSAAPPPPPAFLTQQPQSGGAPAPPPPPQMPA 530

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>GPR64_HUMAN (Q8IZP9) G-protein coupled receptor 64 precursor|
           (Epididymis-specific protein 6) (He6 receptor)
          Length = 1017

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPI 122
           P  S+P  + PA   PP  E   SP PQ   +  PPP+
Sbjct: 304 PQPSAPIASSPAIDMPPQSETISSPMPQTHVSGTPPPV 341

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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQL----A*TLAPPP 119
           P  + P+I R A + PPPP+N + P P      A + APPP
Sbjct: 270 PVGNRPSIHREA-VPPPPPQNNKPPVPSTPRPSASSQAPPP 309

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>RCOR2_RAT (Q5FWT8) REST corepressor 2|
          Length = 523

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           R P  ++PT+ R     PPP +  R   P+LA    PPP+ ++PAL
Sbjct: 454 RPPLPTAPTLLRQ----PPPLQQGRFLQPRLAPNQPPPPL-IRPAL 494

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>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)|
          Length = 523

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           R P  ++PT+ R     PPP +  R   P+LA    PPP+ ++PAL
Sbjct: 454 RPPLPTAPTLLRQ----PPPLQQGRFLQPRLAPNQPPPPL-IRPAL 494

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>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           R P  ++PT+ R     PPP +  R   P+LA    PPP+ ++PAL
Sbjct: 454 RPPLPTAPTLLRQ----PPPLQQGRFLQPRLAPNQPPPPL-IRPAL 494

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           P  + PT + P     PPP  +  P P L  T +PPP    P
Sbjct: 402 PLPAPPTYSPPPPTYSPPPPTYAQP-PPLPPTYSPPPPAYSP 442



 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           RH   S     +P   +PPPP   +SP P  + T +PPP    P
Sbjct: 250 RHLPPSPRRQPQPPTYSPPPPAYAQSPQP--SPTYSPPPPTYSP 291



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +3

Query: 3   RHPAASSPTIARPAQ---ITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           R P   +PT  +P      +PPPP    SP P       P P   QP
Sbjct: 518 RQPRPPTPTYGQPPSPPTFSPPPPRQIHSPPPPHWQPRTPTPTYGQP 564



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           P   SP    P   +PPPP    SP P    T +PPP    P
Sbjct: 286 PPTYSPPPPSPIY-SPPPPAYSPSPPPTPTPTFSPPPPAYSP 326

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 74  PIASSAARVNPSPSPHRPPAGASFGLPHGGPR 169
           P +S+A+ +   P+P RPPA    G P  GPR
Sbjct: 162 PFSSTASGMGTRPTP-RPPASGGTGAPRPGPR 192

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>Y369_TREPA (O83384) Hypothetical protein TP0369 precursor|
          Length = 516

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           PA  +PT  RP + +PPP     S   Q A   +PPP    P
Sbjct: 125 PAPPAPTAPRPHRPSPPPVSPSASKPKQRAVPPSPPPASEPP 166

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>Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region|
          Length = 194

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
 Frame = -3

Query: 431 TAPIDGDRAEV-----VQPSRLILVDGPALGLRHLHALRGILGAIGAERGVGDGAPLLAR 267
           T P D D  E        P  L  + G  L  R L   RG   + G + G G   P  AR
Sbjct: 2   TGPFDDDGPEEDAPVPAPPDHLAGLRGIDLVRRTLEEARGAARSQGKDVGRGRSGP--AR 59

Query: 266 RRGLHFASLAGSGPAPTAPD--------RDLAAGLGFS 177
           R G +      SGP P A D        +DLA   G+S
Sbjct: 60  RVGGNRRRRTWSGPGPDARDPQLLGAVTQDLAKSRGWS 97

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 21  SPTIARPAQITPPPPENFRSP-HPQLA*TLAPPPIGLQPALR 143
           SP+ A P    PPPP   RSP  P    T +PPP    P+ R
Sbjct: 572 SPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPR 613



 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9   PAASSPTIA-RPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPALRSGFLT 158
           P+AS P    RP+    PPP+   SP PQ +       + + P   SG +T
Sbjct: 388 PSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVT 438

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>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 3   RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPALRSGFLTAGLAA 173
           +HP+ ++PT+ +      P   ++   +P+ +   APPP   QP  +S    AG AA
Sbjct: 410 QHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP--QSQAAAAGAAA 464

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>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +3

Query: 21  SPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPALRSGFLTAGL 167
           +P I  P  + PPP    R P P       PPP G  P LR   L + L
Sbjct: 369 APPITGPPPLGPPPAPPMRPPGPPSGPPPGPPP-GAPPFLRPPGLPSAL 416

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>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4|
           (WASP-family protein member 4)
          Length = 625

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIG 125
           P +S P  A P    PPPP     P P       PPPIG
Sbjct: 437 PPSSKPGFAPPPAPPPPPPPMIGIPPP-------PPPIG 468

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>BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 1076

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPA 137
           P A+ P + + +   PPPP     PH Q +    PPP    PA
Sbjct: 843 PPAALPGVRQTSNSGPPPPPPL--PHQQASYQQQPPPAAAAPA 883

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>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression|
            inhibition of growth A)
          Length = 1790

 Score = 23.9 bits (50), Expect(2) = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 110  PSPHRPPAGASFGLPHGGP 166
            P P  PP G +FG+P   P
Sbjct: 1097 PPPPPPPPGGAFGVPPPPP 1115



 Score = 23.9 bits (50), Expect(2) = 4.9
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 6    HPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGL 128
            HP  S      P    PPPP    +P P       PPP GL
Sbjct: 1026 HPGLSGAAPPPPPPPPPPPPGAGAAPPPPPP-PPPPPPGGL 1065

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>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           A  P + RP    PPP  N   P P L  +L PPP G  P
Sbjct: 225 AGPPGVKRP----PPPLMNGLPPRPPLPESLPPPPPGGLP 260

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>CAP2_DICDI (P34122) CABP1-related protein p31/p34|
          Length = 287

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 15  ASSPTIARPA----QITPPPPENFRSPHPQLA*TLAPPP 119
           +S+P ++ P     Q  PPPP N ++P P      APPP
Sbjct: 21  SSTPGVSNPNPQANQFLPPPPSNTQAPRPGFP-PSAPPP 58

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>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 25.4 bits (54), Expect(2) = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 36  RPAQITPPPPENFRSPHPQLA*TLAPPP 119
           +P  + PPPP     P P L   +APPP
Sbjct: 479 KPHAVAPPPP----PPPPPLHAFVAPPP 502



 Score = 21.9 bits (45), Expect(2) = 6.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 104 PSPSPHRPPAGASFGLPHGGP 166
           P P P  PP  A++G P   P
Sbjct: 504 PPPPPPPPPPLANYGAPPPPP 524

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>PRP28_ASPFU (Q4WPE9) Pre-mRNA splicing ATP-dependent RNA helicase prp28 (EC|
           3.6.1.-)
          Length = 796

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 30  IARPAQITPPPPENFRSPHPQLA*TLAPPP 119
           + RP    PPPPE+  +P P    ++ PPP
Sbjct: 22  LERPPTPPPPPPEDSAAPPPPPDTSVPPPP 51

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>GPNMB_MOUSE (Q99P91) Transmembrane glycoprotein NMB precursor (Dendritic|
           cell-associated transmembrane protein) (DC-HIL)
          Length = 574

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 39  PAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           P+  TPPPP    SP P    TL+ P   L P
Sbjct: 326 PSPSTPPPPSTPPSPPPSPLPTLSTPSPSLMP 357

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>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPI--GLQPALRSG 149
           ASSP   + A    PPP   R+P P    T  PP    G  P+ R+G
Sbjct: 618 ASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTG 664

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>VPS54_YEAST (Q12071) Vacuolar protein sorting protein 54 (CPF1 genetically|
           interacting protein 1) (Temperature-sensitive clathrin
           synthetic mutation protein 3)
          Length = 889

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 306 RTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDDIL 452
           ++ G + AA R K+   EG      +SG      S TI+G   L+DD+L
Sbjct: 10  KSQGLQKAAGRPKIVVPEGSPSRNSDSG------SFTIEGDTSLNDDLL 52

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>MURD_XANCP (Q8P775) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 468

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -3

Query: 341 HALRGILGAIGAERGV---GDGAPLLAR-----RRGLHFASLAGSGPA 222
           HA++    A+GA+ GV     GAP          RG HFA LAG  PA
Sbjct: 410 HAMQLARSALGAQGGVLLLSPGAPSFGVYSDYVARGRHFAQLAGFDPA 457

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>MURD_XANC8 (Q4UWX9) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 468

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -3

Query: 341 HALRGILGAIGAERGV---GDGAPLLAR-----RRGLHFASLAGSGPA 222
           HA++    A+GA+ GV     GAP          RG HFA LAG  PA
Sbjct: 410 HAMQLARSALGAQGGVLLLSPGAPSFGVYSDYVARGRHFAQLAGFDPA 457

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>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +3

Query: 6   HPAASSPTIARPAQITPPP--PENFRSPHPQLA*TLAPPPIGLQPA 137
           HP         P    PPP  P   R   P     LA PP GL PA
Sbjct: 413 HPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVAVAALAHPPSGLHPA 458

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>CN155_HUMAN (Q5H9T9) Protein C14orf155|
          Length = 837

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 12  AASSPTIARPAQITPPPPENFRSPHPQLA*TLAPP-----PIGLQPALRSGFL 155
           A  SP+   PA+I PPP E  +SP  +L   +  P     PI +QP    G L
Sbjct: 355 AEESPSEEPPAEILPPPAE--KSPSVELLGEIRSPSAQKAPIEVQPLPAEGAL 405

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>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           A  P + RP    PPP  N   P P L   L PPP G  P
Sbjct: 215 AGPPGVKRP----PPPLMNGLPPRPPLPDALPPPPPGGLP 250

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>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPI--GLQPALRSG 149
           ASSP   + A    PPP   R+P P    T  PP    G  P+ R+G
Sbjct: 617 ASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTG 663

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>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 23.5 bits (49), Expect(2) = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 104  PSPSPHRPPAGASFGLPHGGPRR 172
            PSP+P   P+G+S G   G   R
Sbjct: 1289 PSPAPATGPSGSSSGSSEGSSGR 1311



 Score = 23.5 bits (49), Expect(2) = 8.1
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 3    RHPAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPI 122
            R PAA  P      Q TPP P       P  A +  PPP+
Sbjct: 1211 REPAA--PESELEGQPTPPAPPPPTETWPPTARSSPPPPL 1248

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>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian
           branch point-binding protein mBBP) (BBP)
          Length = 639

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 6   HPAASSPTIARPAQITPPPPENFRSPHP 89
           HP   +P    P  + PPPP   + PHP
Sbjct: 411 HPMQHNPNGPPPPWMQPPPPPMNQGPHP 438

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>ZYX_MOUSE (Q62523) Zyxin|
          Length = 564

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
 Frame = +3

Query: 9   PAASSPTIARPAQ---------ITPPPPENFRSPHPQL 95
           P  S P +A  AQ         I PPPPE+F  P P L
Sbjct: 41  PGDSEPPVAAGAQRAQMGRVGEIPPPPPEDFPLPPPPL 78

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>Y310_HALSA (Q9HSB6) UPF0245 protein Vng0310c|
          Length = 387

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 291 PDAPLRTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDD 446
           PD   RT    DAA+R  +A S       +E+G  D  C   +D    L+DD
Sbjct: 190 PDEIRRTVSVRDAADREHLALSTATITTIEEAGSADRVC---VDTGSLLADD 238

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>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 15  ASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPAL 140
           A +PT   P +  PPPP +  +P P +   + PPP G++P +
Sbjct: 162 AGAPTQYTPGRGGPPPPMSRGAPPPGM---MGPPP-GMRPPM 199

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9   PAASSPTIA-RPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPALRSGFLT 158
           P+AS P    RP+    PPP+   SP PQ +       + + P   SG +T
Sbjct: 390 PSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVT 440

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>PRD10_HUMAN (Q9NQV6) PR domain zinc finger protein 10 (PR domain-containing|
           protein 10)
          Length = 1061

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 6   HPAAS-SPTIARPAQITPPPPENFRSPHPQLA*TLAPPPI 122
           HP A   P+I +     P  P+   S H QL  T+A PP+
Sbjct: 709 HPGAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTIATPPV 748

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>PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)|
          Length = 249

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 54  PPPPENFRSPHPQLA*TLAPPPIGLQPALRS 146
           PPPP     P P      APPP G  PA+RS
Sbjct: 63  PPPPGGSYPPPPPSTGAYAPPPPG--PAIRS 91

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 9   PAASSPTIARPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPALRSG 149
           P    P +  P  + PPPP  + S  P +     PPP    PA  SG
Sbjct: 334 PPPPPPGMRYPGGMPPPPPPRYPSAGPGM---YPPPPPSRPPAPPSG 377

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>PDCD7_HUMAN (Q8N8D1) Programmed cell death protein 7 (ES18) (HES18)|
          Length = 485

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 39  PAQITPPPPENFRSPHPQLA*TLAPPPIGLQP 134
           P    PPPP  F  P P L     PPP+  +P
Sbjct: 14  PPPPQPPPPAPFGCPPPPLPSPAFPPPLPQRP 45

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>ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 421

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 24  PTIARPAQITPPPPENFRSPHPQLA*TLAPPP 119
           P   RP    PPPP +   P P  A  L PPP
Sbjct: 334 PLPPRPPAAQPPPPPSPPPPPPPPASPLPPPP 365

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>TIMP4_MOUSE (Q9JHB3) Metalloproteinase inhibitor 4 precursor (TIMP-4) (Tissue|
           inhibitor of metalloproteinases-4)
          Length = 224

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 369 WPCPRTAPSSCAPRHPRRHW 310
           WP  R    SCAP HP++H+
Sbjct: 22  WPPGRGEACSCAPAHPQQHF 41

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>PDC1_MAIZE (P28516) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)|
          Length = 610

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 413 DRAEVVQPSRLILVDGPALG 354
           ++A +VQP R+++ DGPA G
Sbjct: 349 EKAVIVQPDRMVVGDGPAFG 368

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9   PAASSPTIA-RPAQITPPPPENFRSPHPQLA*TLAPPPIGLQPALRSGFLT 158
           P+AS P    RP+    PPP+   SP PQ +       + + P   SG +T
Sbjct: 390 PSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVT 440

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>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 6   HPAASSPTIARPAQITPPPPENFRSPHP 89
           HP   +P    P  + PPPP   + PHP
Sbjct: 411 HPMQHNPNGPPPPWMQPPPPPMNQGPHP 438

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>PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D (Protein|
           phosphatase 1, regulatory subunit 6) (Protein
           phosphatase 1-binding subunit R6)
          Length = 299

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 387 PTHPGRWPCPRTAPSSCAPR 328
           P  PGR P P  APS C PR
Sbjct: 44  PGSPGRAPPPTPAPSGCDPR 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.118    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,462,801
Number of Sequences: 219361
Number of extensions: 1044730
Number of successful extensions: 5796
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 4540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5648
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result