Clone Information

BLAST Search Result

Clone Name	bastl31b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)	34	0.088
2	CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding...	33	0.26
3	KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription fact...	31	0.97
4	DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)	30	1.3
5	CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding...	30	1.3
6	CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding p...	30	1.3
7	DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)	30	1.7
8	LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatas...	30	1.7
9	LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase ...	30	1.7
10	CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CS...	30	1.7
11	CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin)...	30	2.2
12	MINC_XANAC (Q8PN47) Probable septum site-determining protein minC	29	2.8
13	CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal doma...	29	2.8
14	TEGU_EBV (P03186) Large tegument protein	29	3.7
15	FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved ...	29	3.7
16	XKR6_HUMAN (Q5GH73) XK-related protein 6	29	3.7
17	XKR6_RAT (Q5GH57) XK-related protein 6	29	3.7
18	CRDL1_HUMAN (Q9BU40) Chordin-like protein 1 precursor (Neuralin)...	29	3.7
19	EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-l...	28	4.8
20	EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear a...	28	4.8
21	CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2	28	4.8
22	EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear ...	28	4.8
23	POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p...	28	6.3
24	BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)	28	6.3
25	MINC_XANCP (Q8PBJ4) Probable septum site-determining protein minC	28	6.3
26	ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	6.3
27	PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate p...	28	6.3
28	DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)	28	6.3
29	EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-...	28	6.3
30	ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	6.3
31	Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase sl...	28	6.3
32	VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane an...	28	8.2
33	POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p...	28	8.2
34	CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity fa...	28	8.2
35	CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity fa...	28	8.2
36	CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity fa...	28	8.2
37	SFTA2_HUMAN (Q8IWL1) Pulmonary surfactant-associated protein A2 ...	28	8.2
38	RPP38_HUMAN (P78345) Ribonuclease P protein subunit p38 (EC 3.1....	28	8.2
39	PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate p...	28	8.2
40	ZN553_MOUSE (Q3US17) Zinc finger protein 553	28	8.2

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 213 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 118
           PP PN  +PTS+ T PP    P+   SIH  F
Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725

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>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
 Frame = +1

Query: 1   KHSSIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPR 156
           K  S+P PPP  P  AA   PG RG+        RG   E   ++  E L  R D     
Sbjct: 23  KLESVPPPPP-SPSAAAAGAPGARGSEPRDPGSPRG--SEEPGKKRHERLFHRQD----- 74

Query: 157 AAGWSCTCASGTDGIRP 207
            A W  T ++GT G  P
Sbjct: 75  -ALWISTSSAGTGGAEP 90

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>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 26/74 (35%), Positives = 30/74 (40%)
 Frame = +1

Query: 13  IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 192
           +P  PP  P G  P  PG+ GA        S   SEP  + A    P  AG      SG 
Sbjct: 97  LPPAPPAPPPGPEPASPGQAGAPAA---PPSPAWSEP--EAALEQEPGPAG------SGE 145

Query: 193 DGIRPRREDGRQAA 234
            G+R R   GR  A
Sbjct: 146 PGLRQRGRRGRSRA 159

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>DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 145

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +1

Query: 67  RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR 210
           R+G R  W  AA    +EPLVD   + R RA G   T A+G  G + R
Sbjct: 86  RKGRRPTWNAAAPGDVAEPLVDEV-VARLRALG--ATVATGRFGAQMR 130

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>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
           (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = +1

Query: 1   KHSSIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPR 156
           K  S+P PPP  P  AA   PG RG+        RG   E   ++  E L  R D     
Sbjct: 23  KLESVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD----- 74

Query: 157 AAGWSCTCASGTDGIRP 207
            A W  T ++G  G  P
Sbjct: 75  -ALWISTSSAGAGGAEP 90

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>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = +1

Query: 1   KHSSIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPR 156
           K  S+P PPP  P  AA   PG RG+        RG   E   ++  E L  R D     
Sbjct: 23  KLESVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD----- 74

Query: 157 AAGWSCTCASGTDGIRP 207
            A W  T ++G  G  P
Sbjct: 75  -ALWISTSSAGAGGAEP 90

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>DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 141

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 67  RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR---REDGRQAAL 237
           R+G R  W  AA    +EPLVD   + + RA G   T A+G  G + R     DG    L
Sbjct: 82  RKGRRPTWNAAAPGDVAEPLVDEV-VAQLRALG--ATVATGRFGAQMRVSLTNDGPFTVL 138

Query: 238 VAV 246
           V V
Sbjct: 139 VEV 141

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>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1043

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 120
           ++PS  P DP GA     GR G RG W  A  + S +
Sbjct: 372 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 405

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>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1192

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 120
           ++PS  P DP GA     GR G RG W  A  + S +
Sbjct: 522 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 555

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>CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CSRP2-binding|
           protein) (CRP2BP) (CRP2-binding partner)
          Length = 782

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 22  PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADIN 147
           PPP   + + P + GR+  RG  Q     +S E   DR DI+
Sbjct: 386 PPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 427

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>CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)|
          Length = 447

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   KHSSIPSP---PPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWS 171
           +HS + SP   PP    G  P+ PG R  RG   +  SQQ+S  +V +  IN     G  
Sbjct: 198 RHSYLRSPYDPPPNRQAGGLPRFPGSRSHRGAVID--SQQASGTIV-QIVINNKHKHGQV 254

Query: 172 C 174
           C
Sbjct: 255 C 255

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>MINC_XANAC (Q8PN47) Probable septum site-determining protein minC|
          Length = 249

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 10  SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 144
           S P PPP  P  A P  P  R A G  Q  A +   +   +  D+
Sbjct: 119 SPPPPPPPPPARAEPAPPAARPAPGRMQRTAVRSGQQLYAENCDL 163

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>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +1

Query: 10  SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRP 153
           S PSPP RDP G   Q PG   + G+ + A     SE    R D  RP
Sbjct: 353 SEPSPPVRDPEGVT-QAPGVEPSNGLEKPARELNGSEAATPR-DSPRP 398

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 16  PSPPPRDPLGAAPQLPGRRGARG 84
           PS PPR   GAAPQ P R+   G
Sbjct: 397 PSTPPRASSGAAPQTPKRKKGLG 419

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>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)|
          Length = 413

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = +1

Query: 4   HSSIPS---------PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEP 123
           H  +PS         P PRD   A PQ PGR  A G+   AA+ +   P
Sbjct: 22  HEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP 70

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>XKR6_HUMAN (Q5GH73) XK-related protein 6|
          Length = 641

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 13  IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 132
           IP PP  +P+  AP++PG RG +     A ++Q  +   D
Sbjct: 520 IPLPPDVEPM--APEIPGYRGTQVTPTRAVTEQQEDLTAD 557

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>XKR6_RAT (Q5GH57) XK-related protein 6|
          Length = 638

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 13  IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 132
           IP PP  +P+  APQ PG RG +     A ++Q  +   D
Sbjct: 517 IPLPPDVEPM--APQTPGYRGTQVTPTRAVTEQQEDLTAD 554

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>CRDL1_HUMAN (Q9BU40) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)|
          Length = 450

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 4   HSSIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSC 174
           H S   PPP    G   + PG R  RG   +  SQQ+S  +V +  IN     G  C
Sbjct: 201 HRSHYDPPPSRQAGGLSRFPGARSHRGALMD--SQQASGTIV-QIVINNKHKHGQVC 254

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>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)|
            (Restrictedly overexpressed proliferation-associated
            protein) (Ropp 120)
          Length = 981

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 7    SSIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAG 165
            S+ P+PPP  PL    +   R  +     E + +Q+ EP  D ++      +G
Sbjct: 895  SNTPTPPPSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEESEEGSG 947

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>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2)
          Length = 487

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 225 PSIFPPRPNAISPT--STCTGPPRCTRP 148
           P + PPRP   +P   +T T PPR TRP
Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220

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>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2|
          Length = 1202

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  IPSPPPRDPLGAAPQLPGRRGARG 84
           IPSPPP  P   AP  P  R  RG
Sbjct: 462 IPSPPPSPPPSPAPLEPSSRVGRG 485

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>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2) (EBNA2)
          Length = 451

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 225 PSIFPPRPNAISPT--STCTGPPRCTRP 148
           P + PPRP   +P   +T T PPR TRP
Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186

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>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 246 DGDEGRLPSIFPPRPNAISPTSTCTGPPRCTRP 148
           DGD       +PPRP  I P  T  GP  C  P
Sbjct: 480 DGDMRPYCWHYPPRPCGIVPARTVCGPVYCFTP 512

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>BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)|
          Length = 544

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   HSSIPSPPPRDPLGAAPQL-PGRRGARGVWQEAASQQSSE 120
           HS+  SPPPR P   +P L PG    R V  ++ SQ   E
Sbjct: 502 HSASASPPPRPPSTPSPTLNPGSPPGRSV--DSCSQSDDE 539

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>MINC_XANCP (Q8PBJ4) Probable septum site-determining protein minC|
          Length = 249

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 10  SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 144
           S P PPP  P  A P  P  R A G  Q  A +   +   +  D+
Sbjct: 119 SPPPPPPPPPARAEPAAPVARPAPGRMQRNAVRSGQQLYAENCDL 163

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>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -2

Query: 225  PSIFPPRPNAISPTSTCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTARTSPA 64
            P ++ P    I   +    PP   +P  +SS       H++  A+ AC  LP+   TSP+
Sbjct: 1036 PHVYSP---VIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYACPKLPYNKETSPS 1092

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>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 130  DRADINRPRAAGWSCTCASGTDGIR 204
            D   +NRP   G++C C  G  G+R
Sbjct: 3213 DATCVNRPDGRGYTCRCHLGRSGVR 3237

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>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)|
          Length = 1121

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 22  PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 132
           PPP + L   P +  RRG R VW   A       ++D
Sbjct: 568 PPPPEMLDPLPPICSRRGGRLVWTNEALYDEVVTVID 604

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>EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-inducible|
           factor prolyl hydroxylase 1) (HIF-prolyl hydroxylase 1)
           (HIF-PH1) (HPH-3) (Prolyl hydroxylase domain-containing
           protein 1) (PHD1) (Estrogen-induced tag 6)
          Length = 407

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 43  GAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 192
           GA P+ P R+ A       A   S  P   + +    R  G SC+C+SG+
Sbjct: 111 GARPEAPKRKWAEDGGD--APSPSKRPWARQENQEAEREGGMSCSCSSGS 158

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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
            (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -2

Query: 225  PSIFPPRPNAISPTSTCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTARTSPA 64
            P ++ P    I   +    PP   +P  +SS       H++  A+ AC  LP+   TSP+
Sbjct: 1062 PHVYSP---VIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPS 1118

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>Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase slr1673 (EC|
           2.1.1.-)
          Length = 274

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 221 PSSRLGRMPSVPLAHVQDHPAARGLFISARSTKGSELCWLAASCHTPRAPR 69
           P +RLG +    L  +QD P   G  +   +  G E  WL A C  P +P+
Sbjct: 117 PHARLGLV----LERLQD-PGNLGTILRTAAATGVEGIWLTADCVDPTSPK 162

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>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)|
          Length = 907

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 225 PSIFPPRPNAISPTSTCTGP-PRCTRP 148
           P++  P PNA SPT   T P P  T P
Sbjct: 525 PAVTTPTPNATSPTPAVTTPTPNATSP 551

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>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 216 FPPRPNAISPTSTCTGPPRCTRP 148
           +PPRP  I P  T  GP  C  P
Sbjct: 490 YPPRPCGIVPAQTVCGPVYCFTP 512

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>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 225 PSIFPPRPNAISPTSTCTGPP 163
           P+ FPP  N+  PTS   GPP
Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379

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>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6|
           (Cleavage and polyadenylation specificity factor 68 kDa
           subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor
           Im 68-kDa subunit) (Protein HPBRII-4/7)
          Length = 551

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 225 PSIFPPRPNAISPTSTCTGPP 163
           P+ FPP  N+  PTS   GPP
Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379

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>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6|
          Length = 552

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 225 PSIFPPRPNAISPTSTCTGPP 163
           P+ FPP  N+  PTS   GPP
Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379

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>SFTA2_HUMAN (Q8IWL1) Pulmonary surfactant-associated protein A2 precursor|
           (SP-A2) (SP-A) (PSP-A) (PSPA) (Alveolar proteinosis
           protein) (35 kDa pulmonary surfactant-associated
           protein)
          Length = 248

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 16  PSPPPRDPLGAAPQLPGRRGARG 84
           P PP  + L  AP +PG RG +G
Sbjct: 67  PCPPGNNGLPGAPGVPGERGEKG 89

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>RPP38_HUMAN (P78345) Ribonuclease P protein subunit p38 (EC 3.1.26.5) (RNaseP|
           protein p38)
          Length = 283

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 40  LGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWS 171
           + AAPQ PGR           S + + PLV +  +N P    WS
Sbjct: 1   MAAAPQAPGR----------GSLRKTRPLVVKTSLNNPYIIRWS 34

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>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 130  DRADINRPRAAGWSCTCASGTDGIR 204
            D   +NRP   G++C C  G  G+R
Sbjct: 3896 DATCVNRPDGRGYTCRCHLGRSGLR 3920

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>ZN553_MOUSE (Q3US17) Zinc finger protein 553|
          Length = 591

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
 Frame = +1

Query: 13  IPSPPPRDPLGAAPQLPGRR---------GARGVWQEAASQQSSEP 123
           IPSPPP  PLG +P L  R          G  G+  E    Q+ EP
Sbjct: 369 IPSPPP-PPLGTSPSLTPRSPSHSSDGPFGLPGLEPEPGGPQAGEP 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,978,569
Number of Sequences: 219361
Number of extensions: 772186
Number of successful extensions: 3140
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3127
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result