>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence
          Length = 2841

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 190 actgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtc 246
           |||||||||||| |||||||| ||||||||||||||| | ||||| |||||| ||||
Sbjct: 212 actgatggcatttggccgaggtgggaagatggacggccgccggccgtcgtcgtcgtc 268

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 192      tgatggcattcggccgaggcgggaagatggacggcaggcgg 232
                |||||||||| |||||||||  |||||||||||||||||||
Sbjct: 38384272 tgatggcatttggccgaggctcgaagatggacggcaggcgg 38384232

>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 192    tgatggcattcggccgaggcgggaagatggacggcaggcgg 232
              |||||||||| |||||||||  |||||||||||||||||||
Sbjct: 145097 tgatggcatttggccgaggctcgaagatggacggcaggcgg 145057

>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full
           insert sequence
          Length = 2826

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 192 tgatggcattcggccgaggcgggaagatggacggcaggcgg 232
           |||||||||| |||||||||  |||||||||||||||||||
Sbjct: 137 tgatggcatttggccgaggctcgaagatggacggcaggcgg 177

>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full
           insert sequence
          Length = 2988

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 192 tgatggcattcggccgaggcgggaagatggacggcaggcgg 232
           |||||||||| |||||||||  |||||||||||||||||||
Sbjct: 303 tgatggcatttggccgaggctcgaagatggacggcaggcgg 343

>ref|XM_463541.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 194 atggcattcggccgaggcgggaagatggacggcaggcgg 232
           |||||||| |||||||||  |||||||||||||||||||
Sbjct: 1   atggcatttggccgaggctcgaagatggacggcaggcgg 39

>gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205638

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 60     ccccggccggcgaggtgcgcgcgg 83
              ||||||||||||||||||||||||
Sbjct: 108108 ccccggccggcgaggtgcgcgcgg 108085

>emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surrounding NotI site, clone
          NB1-803R
          Length = 460

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ccccggccggcgaggtgcgcgcgg 83
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68

>emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surrounding NotI site, clone
          NL1-GA3RS
          Length = 667

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ccccggccggcgaggtgcgcgcgg 83
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68

>emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surrounding NotI site, clone
          NL1-FL23RS
          Length = 557

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ccccggccggcgaggtgcgcgcgg 83
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68

>emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-194R
          Length = 724

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ccccggccggcgaggtgcgcgcgg 83
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68

>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence
          Length = 108051

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   cccagctccccggccggcgag 73
            |||||||||||||||||||||
Sbjct: 7532 cccagctccccggccggcgag 7512

>emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-TG13RS
          Length = 600

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 59 tccccggccggcgaggtgcgcgcgg 83
          |||||||||||||||| ||||||||
Sbjct: 45 tccccggccggcgaggggcgcgcgg 69

>gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence
          Length = 118935

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    ggtgtgtggcaggaagcagcaagc 105
             |||| |||||||||||||||||||
Sbjct: 48288 ggtgggtggcaggaagcagcaagc 48311

>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 216792

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    agcagcaagccagcaaagct 115
             ||||||||||||||||||||
Sbjct: 16209 agcagcaagccagcaaagct 16228

>dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper chaperon,
           ortho-aminophenol oxidase, complete cds
          Length = 1530

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 ggccgcgtgcagcggggtgg 168
           ||||||||||||||||||||
Sbjct: 367 ggccgcgtgcagcggggtgg 348

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     ggcaggcggccctcgtcgcc 243
               ||||||||||||||||||||
Sbjct: 1787592 ggcaggcggccctcgtcgcc 1787573

>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104150

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgtacatgtgctagtgggac 191
             ||||||||||||||||||||
Sbjct: 37641 tgtacatgtgctagtgggac 37622

>ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripartite
          motif-containing 65 (LOC303684), mRNA
          Length = 1384

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ggagccgcgccccagctccc 62
          ||||||||||||||||||||
Sbjct: 28 ggagccgcgccccagctccc 47

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     ccggcgaggtgcgcgcggtg 85
              ||||||||||||||||||||
Sbjct: 157990 ccggcgaggtgcgcgcggtg 157971

>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0415D04
          Length = 176627

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    ggcaggcggccctcgtcgcc 243
              ||||||||||||||||||||
Sbjct: 174164 ggcaggcggccctcgtcgcc 174145

>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1227_D07
          Length = 118358

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   ggcaggcggccctcgtcgcc 243
             ||||||||||||||||||||
Sbjct: 26254 ggcaggcggccctcgtcgcc 26235

>emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-CF19RS
          Length = 674

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 60 ccccggccggcgaggtgcgcgcgg 83
          |||||| |||||||||||||||||
Sbjct: 45 ccccggacggcgaggtgcgcgcgg 68

>emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-ED2RS
          Length = 586

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 64 ggccggcgaggtgcgcgcgg 83
          ||||||||||||||||||||
Sbjct: 49 ggccggcgaggtgcgcgcgg 68

>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
            sequence
          Length = 84361

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   cggccggcgaggtgcgcgcg 82
            ||||||||||||||||||||
Sbjct: 9240 cggccggcgaggtgcgcgcg 9259

>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete
              sequence
          Length = 115564

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     cggccggcgaggtgcgcgcg 82
              ||||||||||||||||||||
Sbjct: 104187 cggccggcgaggtgcgcgcg 104206

>gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) gene, multicopy
            single-stranded DNA (msDNA) and RNA (msdRNA) genes,
            complete cds
          Length = 1640

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 64   ggccggcgaggtgcgcgcggtgtg 87
            ||||| ||||||||||||||||||
Sbjct: 1485 ggccgtcgaggtgcgcgcggtgtg 1462

>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete
              sequence
          Length = 202842

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ggagccgcgccccagctccc 62
              ||||||||||||||||||||
Sbjct: 147553 ggagccgcgccccagctccc 147534


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,743,081
Number of Sequences: 3902068
Number of extensions: 1743081
Number of successful extensions: 34072
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33910
Number of HSP's gapped (non-prelim): 162
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)