ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 450 e-123
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 450 e-123
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 450 e-123
4dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 450 e-123
5gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 327 2e-86
6gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 327 2e-86
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
8dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
9dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 327 2e-86
11dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
12dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
13ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.42
14ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.42
15emb|X80052.1|NCFOX2 N.crassa fox-2 gene 44 0.42
16gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of... 42 1.7
17dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.7
18gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.7
19gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MG... 40 6.5
20ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA ... 40 6.5
21gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.5
22ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA 40 6.5
23gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.5
24dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.5
25dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 6.5
26gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 6.5
27gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Ho... 40 6.5
28dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.5
29gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1... 40 6.5
30gb|AY103647.1| Zea mays PCO142084 mRNA sequence 40 6.5
31gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.5
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.5
33dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds 40 6.5 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  450 bits (227), Expect = e-123
 Identities = 299/323 (92%)
 Strand = Plus / Plus

                                                                       
Query: 148 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305

                                                                       
Query: 208 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 267
           |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 365

                                                                       
Query: 268 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 327
            |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 366 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 425

                                                                       
Query: 328 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 387
           ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 426 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 485

                                                                       
Query: 388 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 447
           ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 486 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 545

                                  
Query: 448 catctgccagaatctccgcaaca 470
           |||||||||||| ||||||||||
Sbjct: 546 catctgccagaacctccgcaaca 568
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  450 bits (227), Expect = e-123
 Identities = 299/323 (92%)
 Strand = Plus / Minus

                                                                            
Query: 148      cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
                |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919

                                                                            
Query: 208      cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 267
                |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 10025859

                                                                            
Query: 268      ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 327
                 |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 10025858 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 10025799

                                                                            
Query: 328      caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 387
                ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 10025798 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 10025739

                                                                            
Query: 388      ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 447
                ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 10025738 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 10025679

                                       
Query: 448      catctgccagaatctccgcaaca 470
                |||||||||||| ||||||||||
Sbjct: 10025678 catctgccagaacctccgcaaca 10025656
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  450 bits (227), Expect = e-123
 Identities = 299/323 (92%)
 Strand = Plus / Minus

                                                                          
Query: 148    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201

                                                                          
Query: 208    cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 267
              |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 106141

                                                                          
Query: 268    ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 327
               |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 106140 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 106081

                                                                          
Query: 328    caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 387
              ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 106080 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 106021

                                                                          
Query: 388    ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 447
              ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 106020 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 105961

                                     
Query: 448    catctgccagaatctccgcaaca 470
              |||||||||||| ||||||||||
Sbjct: 105960 catctgccagaacctccgcaaca 105938
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  450 bits (227), Expect = e-123
 Identities = 299/323 (92%)
 Strand = Plus / Minus

                                                                          
Query: 148    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 207
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412

                                                                          
Query: 208    cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 267
              |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 120352

                                                                          
Query: 268    ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 327
               |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 120351 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 120292

                                                                          
Query: 328    caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 387
              ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 120291 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 120232

                                                                          
Query: 388    ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 447
              ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 120231 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 120172

                                     
Query: 448    catctgccagaatctccgcaaca 470
              |||||||||||| ||||||||||
Sbjct: 120171 catctgccagaacctccgcaaca 120149
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score =  327 bits (165), Expect = 2e-86
 Identities = 291/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Minus

                                                                         
Query: 158   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
             |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373

                                                                         
Query: 218   aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
             || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 21313

                                                                         
Query: 278   cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
             |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 21312 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 21253

                                                                         
Query: 338   cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
             ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 21252 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 21193

                                                                         
Query: 398   atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
             ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 21192 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 21133

                                            
Query: 455   cagaatctccgcaac-acctgcagcacccca 484
             ||||| ||||||||| |||| ||||||||||
Sbjct: 21132 cagaacctccgcaacaacctccagcacccca 21102
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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score =  327 bits (165), Expect = 2e-86
 Identities = 291/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Minus

                                                                          
Query: 158    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
              |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838

                                                                          
Query: 218    aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
              || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 170778

                                                                          
Query: 278    cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
              |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 170777 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 170718

                                                                          
Query: 338    cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
              ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 170717 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 170658

                                                                          
Query: 398    atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
              ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 170657 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 170598

                                             
Query: 455    cagaatctccgcaac-acctgcagcacccca 484
              ||||| ||||||||| |||| ||||||||||
Sbjct: 170597 cagaacctccgcaacaacctccagcacccca 170567
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  327 bits (165), Expect = 2e-86
 Identities = 291/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Minus

                                                                           
Query: 158     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701

                                                                           
Query: 218     aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
               || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3653641

                                                                           
Query: 278     cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
               |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 3653640 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3653581

                                                                           
Query: 338     cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
               ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 3653580 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3653521

                                                                           
Query: 398     atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
               ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 3653520 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3653461

                                              
Query: 455     cagaatctccgcaac-acctgcagcacccca 484
               ||||| ||||||||| |||| ||||||||||
Sbjct: 3653460 cagaacctccgcaacaacctccagcacccca 3653430
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>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score =  327 bits (165), Expect = 2e-86
 Identities = 291/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134

                                                                       
Query: 218 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 194

                                                                       
Query: 278 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 195 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 254

                                                                       
Query: 338 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 255 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 314

                                                                       
Query: 398 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 315 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 374

                                          
Query: 455 cagaatctccgcaac-acctgcagcacccca 484
           ||||| ||||||||| |||| ||||||||||
Sbjct: 375 cagaacctccgcaacaacctccagcacccca 405
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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score =  327 bits (165), Expect = 2e-86
 Identities = 291/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201

                                                                       
Query: 218 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 261

                                                                       
Query: 278 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 262 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 321

                                                                       
Query: 338 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 322 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 381

                                                                       
Query: 398 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 382 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 441

                                          
Query: 455 cagaatctccgcaac-acctgcagcacccca 484
           ||||| ||||||||| |||| ||||||||||
Sbjct: 442 cagaacctccgcaacaacctccagcacccca 472
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  327 bits (165), Expect = 2e-86
 Identities = 291/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Minus

                                                                           
Query: 158     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395

                                                                           
Query: 218     aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
               || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3662335

                                                                           
Query: 278     cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
               |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 3662334 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3662275

                                                                           
Query: 338     cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
               ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 3662274 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3662215

                                                                           
Query: 398     atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
               ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 3662214 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3662155

                                              
Query: 455     cagaatctccgcaac-acctgcagcacccca 484
               ||||| ||||||||| |||| ||||||||||
Sbjct: 3662154 cagaacctccgcaacaacctccagcacccca 3662124
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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score =  319 bits (161), Expect = 5e-84
 Identities = 290/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                                                       
Query: 218 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230

                                                                       
Query: 278 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290

                                                                       
Query: 338 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350

                                                                       
Query: 398 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410

                                          
Query: 455 cagaatctccgcaac-acctgcagcacccca 484
           | ||| ||||||||| |||| ||||||||||
Sbjct: 411 ctgaacctccgcaacaacctccagcacccca 441
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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score =  319 bits (161), Expect = 5e-84
 Identities = 290/331 (87%), Gaps = 4/331 (1%)
 Strand = Plus / Plus

                                                                       
Query: 158 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 217
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                                                       
Query: 218 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 277
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230

                                                                       
Query: 278 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 337
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290

                                                                       
Query: 338 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 397
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350

                                                                       
Query: 398 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 454
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410

                                          
Query: 455 cagaatctccgcaac-acctgcagcacccca 484
           | ||| ||||||||| |||| ||||||||||
Sbjct: 411 ctgaacctccgcaacaacctccagcacccca 441
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>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 192  tcgacaagggctccgccgccat 213
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183
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>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 192  tcgacaagggctccgccgccat 213
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183
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>emb|X80052.1|NCFOX2 N.crassa fox-2 gene
          Length = 3401

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 192  tcgacaagggctccgccgccat 213
            ||||||||||||||||||||||
Sbjct: 2665 tcgacaagggctccgccgccat 2686
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>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete
           genome
          Length = 10324

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 231 cggatctggagggcagcgacgtcgccgcc 259
           |||||||| ||||| ||||||||||||||
Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 236 ctggagggcagcgacgtcgccgcc 259
           ||||||||| ||||||||||||||
Sbjct: 508 ctggagggcggcgacgtcgccgcc 531
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 292     cctcctcaatggcgagaccctgccg 316
               |||||||||||||||||| ||||||
Sbjct: 7448022 cctcctcaatggcgagactctgccg 7448046
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 252     tcgccgccaaggtcgaggcca 272
               |||||||||||||||||||||
Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194
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>gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MGC:91516
           IMAGE:7097177), complete cds
          Length = 2635

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 aggaccacaccatccagaag 376
           ||||||||||||||||||||
Sbjct: 886 aggaccacaccatccagaag 905
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>ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA synthetase,
           (PC001076.02.0) partial mRNA
          Length = 1623

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   tacaactatttttcagttgg 21
           ||||||||||||||||||||
Sbjct: 163 tacaactatttttcagttgg 144
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 254     gccgccaaggtcgaggccat 273
               ||||||||||||||||||||
Sbjct: 2893165 gccgccaaggtcgaggccat 2893146
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>ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 aggaccacaccatccagaag 376
           ||||||||||||||||||||
Sbjct: 845 aggaccacaccatccagaag 864
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    cgccgtcgccctccggcgcg 138
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     ccaaggtcgaggccatgaag 277
               ||||||||||||||||||||
Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    ccaaggtcgaggccatgaag 277
              ||||||||||||||||||||
Sbjct: 728522 ccaaggtcgaggccatgaag 728541
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     tcctcaatggcgagaccctg 313
               ||||||||||||||||||||
Sbjct: 4156014 tcctcaatggcgagaccctg 4156033
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     gatcaaggcggatctggagg 242
               ||||||||||||||||||||
Sbjct: 1763887 gatcaaggcggatctggagg 1763868
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>gb|AC131405.5| Rattus norvegicus  BAC CH230-179I7 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 217197

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    aggaccacaccatccagaag 376
              ||||||||||||||||||||
Sbjct: 142948 aggaccacaccatccagaag 142929
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     cgtcgccgccaaggtcgagg 269
               ||||||||||||||||||||
Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327
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>gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1) mRNA, complete
           cds
          Length = 2440

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 cgtcgtccgctacgtcctcc 350
           ||||||||||||||||||||
Sbjct: 265 cgtcgtccgctacgtcctcc 284
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>gb|AY103647.1| Zea mays PCO142084 mRNA sequence
          Length = 2598

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 415  tgccgctggccgcgtcctcc 434
            ||||||||||||||||||||
Sbjct: 1826 tgccgctggccgcgtcctcc 1807
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    ccaaggtcgaggccatgaag 277
              ||||||||||||||||||||
Sbjct: 759001 ccaaggtcgaggccatgaag 759020
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 246     gcgacgtcgccgccaaggtc 265
               ||||||||||||||||||||
Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017
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>dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 aggaccacaccatccagaag 376
           ||||||||||||||||||||
Sbjct: 845 aggaccacaccatccagaag 864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,955,990
Number of Sequences: 3902068
Number of extensions: 2955990
Number of successful extensions: 55275
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54315
Number of HSP's gapped (non-prelim): 952
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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