Clone Name | bastl31a10 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009444.1| Triticum aestivum clone wlmk8.pk0004.f6:fis, full insert mRNA sequence Length = 1858 Score = 280 bits (141), Expect = 2e-72 Identities = 177/188 (94%), Gaps = 7/188 (3%) Strand = Plus / Plus Query: 22 cttctctgcat--accaagaagtcgcctccgttgctttcctccagcagtgcgcgcccctc 79 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cttctctgcatccaccaagaagtcgcctccgttgctttcctccagcagtgcgcgcccctc 60 Query: 80 ccctcctctcgagatcttctccgagttgctgagatctggttgtaagcagccaagatggtg 139 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 61 c-----tctcgagatcttctccgagttcctgagatctggttgtaagcagccaagatggtg 115 Query: 140 aagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcattgccatc 199 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 116 aagatctgctgcatcggagctggctacgtcggcggcccaaccatggctgtcattgccatc 175 Query: 200 aagtgccc 207 |||||||| Sbjct: 176 aagtgccc 183
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 119 bits (60), Expect = 4e-24 Identities = 75/80 (93%) Strand = Plus / Plus Query: 130 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgt 189 |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || Sbjct: 141722 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccgaccatggccgt 141781 Query: 190 cattgccatcaagtgcccag 209 ||||||| |||||||||||| Sbjct: 141782 cattgccctcaagtgcccag 141801
>gb|AY103689.1| Zea mays PCO113568 mRNA sequence Length = 1967 Score = 111 bits (56), Expect = 9e-22 Identities = 74/80 (92%) Strand = Plus / Plus Query: 130 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgt 189 |||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 169 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 228 Query: 190 cattgccatcaagtgcccag 209 ||||||| | |||||||||| Sbjct: 229 cattgccctaaagtgcccag 248
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 105 bits (53), Expect = 5e-20 Identities = 80/89 (89%) Strand = Plus / Plus Query: 121 gtaagcagccaagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgac 180 |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct: 14938859 gtaagcaggaaagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaac 14938918 Query: 181 aatggctgtcattgccatcaagtgcccag 209 ||||||||||||||| |||| ||||||| Sbjct: 14938919 catggctgtcattgccctcaaatgcccag 14938947 Score = 93.7 bits (47), Expect = 2e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct: 14932993 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 14933052 Query: 191 attgccatcaagtgcccag 209 |||||| |||| ||||||| Sbjct: 14933053 attgccctcaaatgcccag 14933071
>dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A09, full insert sequence Length = 1774 Score = 105 bits (53), Expect = 5e-20 Identities = 80/89 (89%) Strand = Plus / Plus Query: 121 gtaagcagccaagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgac 180 |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct: 94 gtaagcaggaaagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaac 153 Query: 181 aatggctgtcattgccatcaagtgcccag 209 ||||||||||||||| |||| ||||||| Sbjct: 154 catggctgtcattgccctcaaatgcccag 182
>dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023C02, full insert sequence Length = 1824 Score = 105 bits (53), Expect = 5e-20 Identities = 80/89 (89%) Strand = Plus / Plus Query: 121 gtaagcagccaagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgac 180 |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct: 223 gtaagcaggaaagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaac 282 Query: 181 aatggctgtcattgccatcaagtgcccag 209 ||||||||||||||| |||| ||||||| Sbjct: 283 catggctgtcattgccctcaaatgcccag 311
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 105 bits (53), Expect = 5e-20 Identities = 80/89 (89%) Strand = Plus / Plus Query: 121 gtaagcagccaagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgac 180 |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct: 14893142 gtaagcaggaaagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaac 14893201 Query: 181 aatggctgtcattgccatcaagtgcccag 209 ||||||||||||||| |||| ||||||| Sbjct: 14893202 catggctgtcattgccctcaaatgcccag 14893230 Score = 93.7 bits (47), Expect = 2e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct: 14887276 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 14887335 Query: 191 attgccatcaagtgcccag 209 |||||| |||| ||||||| Sbjct: 14887336 attgccctcaaatgcccag 14887354
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 174521 Score = 105 bits (53), Expect = 5e-20 Identities = 80/89 (89%) Strand = Plus / Minus Query: 121 gtaagcagccaagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgac 180 |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct: 142988 gtaagcaggaaagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaac 142929 Query: 181 aatggctgtcattgccatcaagtgcccag 209 ||||||||||||||| |||| ||||||| Sbjct: 142928 catggctgtcattgccctcaaatgcccag 142900 Score = 93.7 bits (47), Expect = 2e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct: 148854 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 148795 Query: 191 attgccatcaagtgcccag 209 |||||| |||| ||||||| Sbjct: 148794 attgccctcaaatgcccag 148776
>gb|BT016824.1| Zea mays clone Contig657 mRNA sequence Length = 1951 Score = 103 bits (52), Expect = 2e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 |||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||| Sbjct: 170 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggccgtcatt 229 Query: 194 gccatcaagtgcccag 209 ||| |||||||||||| Sbjct: 230 gccctcaagtgcccag 245
>dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E05, full insert sequence Length = 1865 Score = 93.7 bits (47), Expect = 2e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct: 118 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 177 Query: 191 attgccatcaagtgcccag 209 |||||| |||| ||||||| Sbjct: 178 attgccctcaaatgcccag 196
>dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H11, full insert sequence Length = 1852 Score = 93.7 bits (47), Expect = 2e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct: 118 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 177 Query: 191 attgccatcaagtgcccag 209 |||||| |||| ||||||| Sbjct: 178 attgccctcaaatgcccag 196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 3e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||| ||| Sbjct: 17586539 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 17586598 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 17586599 atcgccctcaagtgccc 17586615 Score = 81.8 bits (41), Expect = 8e-13 Identities = 68/77 (88%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 31012611 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 31012670 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 31012671 atcgccctcaagtgccc 31012687 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || || Sbjct: 22450946 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 22450887 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 22450886 gcgctcaagtgccc 22450873 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gtgcgcgcccctcccctcct 86 |||||||||||||||||||| Sbjct: 7921245 gtgcgcgcccctcccctcct 7921264
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 89.7 bits (45), Expect = 3e-15 Identities = 69/77 (89%) Strand = Plus / Minus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||| ||| Sbjct: 68538 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 68479 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 68478 atcgccctcaagtgccc 68462
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 3e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 ||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||| ||| Sbjct: 17580080 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 17580139 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 17580140 atcgccctcaagtgccc 17580156 Score = 81.8 bits (41), Expect = 8e-13 Identities = 68/77 (88%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 31103134 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 31103193 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 31103194 atcgccctcaagtgccc 31103210 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || || Sbjct: 22443975 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 22443916 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 22443915 gcgctcaagtgccc 22443902 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gtgcgcgcccctcccctcct 86 |||||||||||||||||||| Sbjct: 7919080 gtgcgcgcccctcccctcct 7919099
>ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1446 Score = 83.8 bits (42), Expect = 2e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 |||||||||||||||||| |||| || ||||| |||||||||||||| ||||| ||||| Sbjct: 1 atggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtcatc 60 Query: 194 gccatcaagtgccc 207 ||| |||||||||| Sbjct: 61 gccctcaagtgccc 74
>ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2058 Score = 81.8 bits (41), Expect = 8e-13 Identities = 68/77 (88%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 205 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 264 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 265 atcgccctcaagtgccc 281
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 81.8 bits (41), Expect = 8e-13 Identities = 68/77 (88%) Strand = Plus / Minus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 83453 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 83394 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 83393 atcgccctcaagtgccc 83377
>dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F12, full insert sequence Length = 1946 Score = 81.8 bits (41), Expect = 8e-13 Identities = 68/77 (88%) Strand = Plus / Plus Query: 131 aagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtc 190 |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 110 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 169 Query: 191 attgccatcaagtgccc 207 || ||| |||||||||| Sbjct: 170 atcgccctcaagtgccc 186
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || || Sbjct: 46193 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 46134 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 46133 gcgctcaagtgccc 46120
>gb|AY496079.1| Cinnamomum osmophloeum UDP-glucose dehydrogenase (UDPGDH) mRNA, complete cds Length = 1443 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| ||||||||||| ||||| || || || |||||||| |||||||||||| Sbjct: 1 atggtgaagatatgctgcatcggagctggatatgttggtggcccgaccatggctgtcatt 60 Query: 194 gc 195 || Sbjct: 61 gc 62
>gb|AY466400.1| Populus tomentosa UDP-glucose dehydrogenase (ugdh) mRNA, complete cds Length = 1819 Score = 60.0 bits (30), Expect = 3e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 |||||||||||||| ||||| || || || || |||||||| || |||||||||||||| Sbjct: 78 atggtgaagatctgttgcattggagcagggtatgtcggcgggcctacaatggctgtcatc 137 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 138 gcactcaagtgccc 151
>ref|XM_428078.1| PREDICTED: Gallus gallus similar to UDP-glucose 6-dehydrogenase (LOC430523), partial mRNA Length = 555 Score = 56.0 bits (28), Expect = 4e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggctacgtcggcgg 174 |||||||||||| |||||||||||||| |||||||| Sbjct: 408 gaagatctgctgtatcggtgctggctatgtcggcgg 443
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 56.0 bits (28), Expect = 4e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 142 gatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgt 189 ||||||||||||||| || ||||| || ||||||||||| |||||||| Sbjct: 203891 gatctgctgcatcggcgccggctatgtgggcggcccgaccatggctgt 203938
>emb|AJ851561.1| Gallus gallus mRNA for hypothetical protein, clone 7d7 Length = 3956 Score = 56.0 bits (28), Expect = 4e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggctacgtcggcgg 174 |||||||||||| |||||||||||||| |||||||| Sbjct: 164 gaagatctgctgtatcggtgctggctatgtcggcgg 199
>gb|AY222335.1| Colocasia esculenta UDP-glucose dehydrogenase (UDPGDH) mRNA, complete cds Length = 1443 Score = 56.0 bits (28), Expect = 4e-05 Identities = 64/76 (84%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| ||||| ||||| |||||||| ||||| || || || |||||||| || Sbjct: 1 atggtgaagatttgctgtatcggagctggctatgtcggggggccaactatggctgtgatc 60 Query: 194 gccatcaagtgcccag 209 || |||||||||||| Sbjct: 61 gcactcaagtgcccag 76
>gb|AY110924.1| Zea mays CL298_3 mRNA sequence Length = 679 Score = 56.0 bits (28), Expect = 4e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 158 gctggctacgtcggcggcccgacaatggctgtcattgccatcaagtgcccag 209 |||||||| ||||| ||||| || ||||| ||||||||| |||||||||||| Sbjct: 190 gctggctatgtcggtggcccaaccatggccgtcattgccctcaagtgcccag 241
>ref|NM_001012581.1| Gallus gallus UDP-glucose dehydrogenase (UGDH), mRNA Length = 3956 Score = 56.0 bits (28), Expect = 4e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggctacgtcggcgg 174 |||||||||||| |||||||||||||| |||||||| Sbjct: 164 gaagatctgctgtatcggtgctggctatgtcggcgg 199
>gb|AC119411.16| Medicago truncatula clone mth2-23c14, complete sequence Length = 106790 Score = 52.0 bits (26), Expect = 7e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| |||||||| ||||| || || ||||| || || |||||||| |||||| Sbjct: 71914 atggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcatt 71973 Query: 194 gc 195 || Sbjct: 71974 gc 71975
>gb|AF053973.1| Populus tremula x Populus tremuloides UDP-glucose dehydrogenase gene (ugdh), complete cds Length = 1824 Score = 52.0 bits (26), Expect = 7e-04 Identities = 62/74 (83%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 |||||||||||||| ||||| || || || || ||||| || || |||||||||||||| Sbjct: 78 atggtgaagatctgttgcattggagcagggtatgtcggtgggcctacaatggctgtcatc 137 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 138 gcactcaagtgccc 151
>gb|AY619948.1| Nicotiana tabacum putative UDP-glucose dehydrogenase 1 mRNA, complete cds Length = 1823 Score = 52.0 bits (26), Expect = 7e-04 Identities = 62/74 (83%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| ||||| || |||||||| || || || ||||| || ||||||||||| Sbjct: 89 atggtgaagatttgctgtataggtgctggatatgttgggggccccaccatggctgtcata 148 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 149 gcactcaagtgccc 162
>ref|NM_031325.1| Rattus norvegicus UDP-glucose dehydrogenase (Ugdh), mRNA Length = 2318 Score = 48.1 bits (24), Expect = 0.011 Identities = 33/36 (91%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggctacgtcggcgg 174 ||||||||| ||||| ||||| |||||||||||||| Sbjct: 125 gaagatctgttgcattggtgcgggctacgtcggcgg 160
>dbj|AB013732.1| Rattus norvegicus mRNA for UDP-glucose dehydrogeanse, complete cds Length = 2318 Score = 48.1 bits (24), Expect = 0.011 Identities = 33/36 (91%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggctacgtcggcgg 174 ||||||||| ||||| ||||| |||||||||||||| Sbjct: 125 gaagatctgttgcattggtgcgggctacgtcggcgg 160
>ref|NM_174211.2| Bos taurus UDP-glucose dehydrogenase (UGDH), mRNA Length = 2871 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggcta 165 ||||||||||||||||||||| ||||| Sbjct: 141 gaagatctgctgcatcggtgcaggcta 167
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 46.1 bits (23), Expect = 0.043 Identities = 32/35 (91%) Strand = Plus / Minus Query: 152 atcggtgctggctacgtcggcggcccgacaatggc 186 ||||| || ||||| |||||||||||||||||||| Sbjct: 647600 atcggcgccggctatgtcggcggcccgacaatggc 647566
>gb|AF095792.1|AF095792 Bos taurus UDP-glucose dehydrogenase (UDPGDH) mRNA, complete cds Length = 2871 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggcta 165 ||||||||||||||||||||| ||||| Sbjct: 141 gaagatctgctgcatcggtgcaggcta 167
>gb|U53418.1|GMU53418 Glycine max UDP-glucose dehydrogenase mRNA, complete cds Length = 1714 Score = 46.1 bits (23), Expect = 0.043 Identities = 62/75 (82%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| |||||||| |||||||| || || || || || || ||||| |||||| Sbjct: 13 atggtgaagatttgctgcattggtgctggatatgtggggggtcctactatggcagtcatt 72 Query: 194 gccatcaagtgccca 208 || | ||||||||| Sbjct: 73 gcacttaagtgccca 87
>ref|NM_121553.2| Arabidopsis thaliana UDP-glucose 6-dehydrogenase AT5G15490 mRNA, complete cds Length = 1778 Score = 44.1 bits (22), Expect = 0.17 Identities = 52/62 (83%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| |||||||| || ||||| || || || || || || |||||||||||| Sbjct: 103 atggtgaagatttgctgcattggagctggatatgttggtggtccaaccatggctgtcatt 162 Query: 194 gc 195 || Sbjct: 163 gc 164
>gb|BT015794.1| Arabidopsis thaliana At5g15490 mRNA, complete cds Length = 1443 Score = 44.1 bits (22), Expect = 0.17 Identities = 52/62 (83%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| |||||||| || ||||| || || || || || || |||||||||||| Sbjct: 1 atggtgaagatttgctgcattggagctggatatgttggtggtccaaccatggctgtcatt 60 Query: 194 gc 195 || Sbjct: 61 gc 62
>gb|AY212254.1| Synthetic construct Homo sapiens uridine diphosphoglucose dehydrogenase mRNA, complete cds Length = 1512 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 143 atctgctgcatcggtgctggctacgt 168 ||||||||||||||||| |||||||| Sbjct: 45 atctgctgcatcggtgccggctacgt 70
>gb|AY056200.1| Arabidopsis thaliana putative UDP-glucose dehydrogenase (At5g15490) mRNA, complete cds Length = 1793 Score = 44.1 bits (22), Expect = 0.17 Identities = 52/62 (83%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| |||||||| || ||||| || || || || || || |||||||||||| Sbjct: 103 atggtgaagatttgctgcattggagctggatatgttggtggtccaaccatggctgtcatt 162 Query: 194 gc 195 || Sbjct: 163 gc 164
>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24 Length = 340750 Score = 44.1 bits (22), Expect = 0.17 Identities = 34/38 (89%) Strand = Plus / Plus Query: 149 tgcatcggtgctggctacgtcggcggcccgacaatggc 186 ||||||||||| ||||||||||| || ||||| ||||| Sbjct: 308724 tgcatcggtgccggctacgtcggtggtccgacgatggc 308761
>emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project) Length = 90176 Score = 44.1 bits (22), Expect = 0.17 Identities = 52/62 (83%) Strand = Plus / Minus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| |||||||| || ||||| || || || || || || |||||||||||| Sbjct: 35092 atggtgaagatttgctgcattggagctggatatgttggtggtccaaccatggctgtcatt 35033 Query: 194 gc 195 || Sbjct: 35032 gc 35031
>gb|AC146785.12| Medicago truncatula clone mth2-4h4, complete sequence Length = 149005 Score = 44.1 bits (22), Expect = 0.17 Identities = 52/62 (83%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| || ||||| || |||||||| || || || || ||||||||||| ||| Sbjct: 69389 atggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggctgtgatt 69448 Query: 194 gc 195 || Sbjct: 69449 gc 69450
>gb|AY619949.1| Nicotiana tabacum putative UDP-glucose dehydrogenase 2 mRNA, complete cds Length = 1768 Score = 44.1 bits (22), Expect = 0.17 Identities = 61/74 (82%) Strand = Plus / Plus Query: 134 atggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgtcatt 193 ||||||||||| ||||| || |||||||| || || || || || || ||||||||||| Sbjct: 80 atggtgaagatttgctgtataggtgctggatatgttggggggcccaccatggctgtcata 139 Query: 194 gccatcaagtgccc 207 || |||||||||| Sbjct: 140 gcactcaagtgccc 153
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 0.67 Identities = 39/45 (86%) Strand = Plus / Plus Query: 142 gatctgctgcatcggtgctggctacgtcggcggcccgacaatggc 186 |||||||||||||||||| ||||| || || || ||||| ||||| Sbjct: 198914 gatctgctgcatcggtgcgggctatgtgggtggtccgaccatggc 198958
>gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete sequence Length = 118017 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 atggtgaagatctgctgcatcggtg 158 ||||||||||| ||||||||||||| Sbjct: 40852 atggtgaagatttgctgcatcggtg 40828
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 gcagtgcgcgcccctcccctcctc 87 |||||||| ||||||||||||||| Sbjct: 134190 gcagtgcgtgcccctcccctcctc 134167
>gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, complete sequence Length = 216410 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 cttcttctctgcataccaagaagt 42 ||||||||||||||||| |||||| Sbjct: 25018 cttcttctctgcatacctagaagt 25041
>gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosome 7, complete sequence Length = 238433 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ttgctttcctccagcagtgc 70 |||||||||||||||||||| Sbjct: 207477 ttgctttcctccagcagtgc 207496
>ref|NM_019919.2| Mus musculus latent transforming growth factor beta binding protein 1 (Ltbp1), transcript variant 1, mRNA Length = 6712 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 142 cgcgcccctcccctcctctc 161
>gb|AY194919.1| Tachyglossus aculeatus clone TaG2FL4 interferon-alpha gene, complete cds Length = 1654 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aagatggtgaagatctgctg 150 |||||||||||||||||||| Sbjct: 1155 aagatggtgaagatctgctg 1136
>ref|XM_568166.1| Cryptococcus neoformans var. neoformans JEC21 UDP-glucose 6-dehydrogenase (CNL06460) partial mRNA Length = 1646 Score = 40.1 bits (20), Expect = 2.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 139 gaagatctgctgcatcggtgctggctacgtcggcgg 174 |||||||||||| ||||| ||||| || |||||||| Sbjct: 75 gaagatctgctgtatcggcgctggttatgtcggcgg 110
>gb|AC126550.3| Mus musculus BAC clone RP24-405L5 from chromosome 17, complete sequence Length = 171820 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 137154 cgcgcccctcccctcctctc 137135
>ref|NM_021587.1| Rattus norvegicus latent transforming growth factor beta binding protein 1 (Ltbp1), mRNA Length = 6244 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 119 cgcgcccctcccctcctctc 138
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ctgctgcatcggtgctggct 164 |||||||||||||||||||| Sbjct: 933150 ctgctgcatcggtgctggct 933131
>ref|XM_503520.1| Yarrowia lipolytica CLIB122, YALI0E03938g predicted mRNA Length = 489 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tcgcctccgttgctttcctc 61 |||||||||||||||||||| Sbjct: 14 tcgcctccgttgctttcctc 33
>ref|XM_796838.1| PREDICTED: Strongylocentrotus purpuratus similar to protein-tyrosine kinase fyn isoform c, transcript variant 3 (LOC577286), mRNA Length = 1944 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcagcttcttctctgcat 32 |||||||||||||||||||| Sbjct: 482 cagcagcttcttctctgcat 463
>ref|XM_796789.1| PREDICTED: Strongylocentrotus purpuratus similar to protein-tyrosine kinase fyn isoform c, transcript variant 2 (LOC577286), mRNA Length = 2073 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcagcttcttctctgcat 32 |||||||||||||||||||| Sbjct: 482 cagcagcttcttctctgcat 463
>ref|XM_775015.1| PREDICTED: Strongylocentrotus purpuratus similar to protein-tyrosine kinase fyn isoform c, transcript variant 1 (LOC577286), mRNA Length = 2100 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcagcttcttctctgcat 32 |||||||||||||||||||| Sbjct: 482 cagcagcttcttctctgcat 463
>emb|X57144.1|HHRNAPOP H. halobium RNA polymerase subunit operon Length = 11208 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 agatcttctccgagttgctg 110 |||||||||||||||||||| Sbjct: 6914 agatcttctccgagttgctg 6933
>ref|NM_011980.2| Mus musculus zinc finger protein 146 (Zfp146), mRNA Length = 2032 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ttgctttcctccagcagtgc 70 |||||||||||||||||||| Sbjct: 442 ttgctttcctccagcagtgc 423
>gb|AF346434.1|F346434S01 Mus musculus latent transforming growth factor beta binding protein (Ltbp1) gene, exon 1 Length = 1840 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 701 cgcgcccctcccctcctctc 720
>dbj|AK047696.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030013F13 product:zinc finger protein 146, full insert sequence Length = 2032 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ttgctttcctccagcagtgc 70 |||||||||||||||||||| Sbjct: 442 ttgctttcctccagcagtgc 423
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gtgcgcgcccctcccctcct 86 |||||||||||||||||||| Sbjct: 106843 gtgcgcgcccctcccctcct 106862
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cgttgctttcctccagcagt 68 |||||||||||||||||||| Sbjct: 126570 cgttgctttcctccagcagt 126589
>gb|AE005138.1| Halobacterium sp. NRC-1 section 169 of 170 of the complete genome Length = 10529 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 agatcttctccgagttgctg 110 |||||||||||||||||||| Sbjct: 4919 agatcttctccgagttgctg 4900
>gb|AC154616.2| Mus musculus BAC clone RP23-319O9 from 14, complete sequence Length = 179927 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 cttcttctctgcataccaagaagt 42 ||||||||||||||||| |||||| Sbjct: 178755 cttcttctctgcatacctagaagt 178778
>gb|AF022889.1|AF022889 Mus musculus latent TGF beta binding protein (LTBP-1) mRNA, complete cds Length = 6240 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 107 cgcgcccctcccctcctctc 126
>gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, complete sequence Length = 191399 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 2151 cgcgcccctcccctcctctc 2132
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tcgcctccgttgctttcctc 61 |||||||||||||||||||| Sbjct: 438347 tcgcctccgttgctttcctc 438328
>gb|M55431.1|RATTGFB Rat transforming growth factor-beta (TGF-beta) masking protein large subunit, complete cds Length = 6244 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgcgcccctcccctcctctc 89 |||||||||||||||||||| Sbjct: 119 cgcgcccctcccctcctctc 138 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,947,925 Number of Sequences: 3902068 Number of extensions: 1947925 Number of successful extensions: 170814 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 169933 Number of HSP's gapped (non-prelim): 880 length of query: 209 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 187 effective length of database: 17,147,199,772 effective search space: 3206526357364 effective search space used: 3206526357364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)