>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (hMAdCAM-1)
          Length = 406

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 8   TFPNPKCRCGLTHSPRSPLSTRT 76
           T P P  + G TH+PRSP STRT
Sbjct: 292 TSPEPAPQQGSTHTPRSPGSTRT 314

>MSRA3_RHIME (Q92Y45) Peptide methionine sulfoxide reductase msrA 3 (EC 1.8.4.6)|
           (Protein-methionine-S-oxide reductase 3) (Peptide Met(O)
           reductase 3)
          Length = 168

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 212 PSHNNFLRKLDN---CHFAHPSWV 274
           P H N+L +  N   CHF  P+WV
Sbjct: 137 PEHQNYLERYPNGYTCHFPRPNWV 160

>MSRA2_RHOBA (Q7UJI2) Peptide methionine sulfoxide reductase msrA 2 (EC 1.8.4.6)|
           (Protein-methionine-S-oxide reductase 2) (Peptide Met(O)
           reductase 2)
          Length = 168

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 212 PSHNNFLRKLDN---CHFAHPSWV 274
           P H ++L K+ N   CHF  P+WV
Sbjct: 137 PEHQDYLEKVPNGYTCHFPRPNWV 160

>FLGI1_BRAJA (Q89I01) Flagellar P-ring protein 1 precursor (Basal body P-ring|
           protein 1)
          Length = 374

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 286 QCEVDPGRMCKMAIIQLSQEVVVGRDARIGT 194
           Q +VDP    K+ I + S  +V+GRD R+ T
Sbjct: 252 QLQVDPDLAAKIVIDERSGIIVMGRDVRVAT 282

>FLGI_RHOPA (Q6N2Y8) Flagellar P-ring protein precursor (Basal body P-ring|
           protein)
          Length = 373

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 286 QCEVDPGRMCKMAIIQLSQEVVVGRDARIGT 194
           Q +V+P +  K+ I + S  +V+GRD R+ T
Sbjct: 251 QLQVEPDQAAKIVIDERSGIIVMGRDVRVAT 281

>MCP5_SCHPO (Q9Y7J9) Meiotic coiled-coil protein 5|
          Length = 968

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 50  PRSPLSTRTHPAGEFKRKRHQREQ 121
           P +P +TRT+P  E ++ RH   Q
Sbjct: 758 PSAPKNTRTYPTAEVEKTRHDSSQ 781

>MSRA1_RHILO (Q98JV5) Peptide methionine sulfoxide reductase msrA 1 (EC 1.8.4.6)|
           (Protein-methionine-S-oxide reductase 1) (Peptide Met(O)
           reductase 1)
          Length = 172

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
 Frame = +2

Query: 212 PSHNNFLRKLDN---CHFAHPSW 271
           P H ++L K  N   CHF  P W
Sbjct: 140 PEHQDYLEKYPNGYTCHFVRPGW 162

>ETV6_MOUSE (P97360) Transcription factor ETV6 (ETS-related protein Tel1) (Tel)|
           (ETS translocation variant 6)
          Length = 485

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 38  LTHSPRSPLSTRTHPAGEFKRKRHQR 115
           L H PRSP++T   P+ + +++R QR
Sbjct: 179 LLHRPRSPITTNHRPSPDPEQQRPQR 204

>SQSTM_RAT (O08623) Sequestosome-1 (Ubiquitin-binding protein p62) (Protein|
           kinase C-zeta-interacting protein) (PKC-zeta-interacting
           protein)
          Length = 439

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 SHNNFLRKLDNCHFAHPSW 271
           SH+ +LRKL + HF  P W
Sbjct: 177 SHSRWLRKLKHGHFGWPGW 195

>SQSTM_MOUSE (Q64337) Sequestosome-1 (Ubiquitin-binding protein p62) (STONE14)|
          Length = 442

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 SHNNFLRKLDNCHFAHPSW 271
           SH+ +LRKL + HF  P W
Sbjct: 180 SHSRWLRKLKHGHFGWPGW 198

>UNG_VZVD (P09307) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 305

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 5   TTFPNPKCRCGLTHSPRSPLS 67
           TT PN +C   LTH+  SPLS
Sbjct: 255 TTQPNSRCHLVLTHAHPSPLS 275


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,185,007
Number of Sequences: 219361
Number of extensions: 361554
Number of successful extensions: 929
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)