ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31a06 |
|---|---|
| Clone Library Name | barley_pub |
>HOX1A_MAIZE (P46605) Homeobox protein HOX1A| Length = 719 Score = 37.7 bits (86), Expect = 0.014 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +2 Query: 317 RGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPLRSA 457 RG+KGSQ + Y S++S RVLRSTS K+ + +P++ A Sbjct: 57 RGKKGSQGLTGQAYTLMSSNSDVRVLRSTSSSKTTSTEHVQAPVQPA 103
>YJY1_SCHPO (Q9USN8) Hypothetical protein C132.01c in chromosome III| Length = 1021 Score = 32.3 bits (72), Expect = 0.61 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = +2 Query: 284 NDSSSPPTKG--------KRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 418 N+ S+P T G KRG+KGS++ +KK + + R R T+ ++S Sbjct: 751 NNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEES 803
>VE2_HPV38 (Q80910) Regulatory protein E2| Length = 441 Score = 32.3 bits (72), Expect = 0.61 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Frame = +2 Query: 167 P*VSQDWPISSRREGRSAVIIYMDKTSASGL---VQENKKVGNDSSSPPTKGKRGRKGSQ 337 P S P+ + S + TS S Q ++ G +SSP T +R RKG + Sbjct: 197 PVTSSTPPVGDSTDSASRAALPEPSTSVSPERPPSQTARRYGRKASSPSTTSRRQRKGQR 256 Query: 338 ITASKKYLRRSAHSSARVLRSTSKD--KSKTPNEPVSPLR 451 T + RR + S +R +D +S + VSP R Sbjct: 257 ETTGTQ-RRRKSRSRSRSTNRGGRDTRRSSSRGSSVSPTR 295
>VAC7_YEAST (P53950) Vacuolar segregation protein 7| Length = 1165 Score = 32.0 bits (71), Expect = 0.79 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%) Frame = +2 Query: 188 PISSRREGRSAVIIYMDKTSASGLVQENKKVGNDSSSPPTKG----KRGRKG-----SQI 340 P SS R +S++++ + AS + KK S++ PT + R S Sbjct: 143 PSSSLRNKKSSLLVASNPAFASDVELSKKKPAVISNNMPTSNIALYQTARSANIHGPSST 202 Query: 341 TASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPLRS 454 +ASK + + SA S+ +++ S TP P+ PL S Sbjct: 203 SASKAFRKASAFSNNTAPSTSNNIGSNTPPAPLLPLPS 240
>CCNL2_MOUSE (Q9JJA7) Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced| expression protein) (PCEE) Length = 518 Score = 32.0 bits (71), Expect = 0.79 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Frame = +2 Query: 236 DKTSASGLVQENKKVGNDSSSPPTKGKRGR--KGSQITASKK-----YLRRSAHSSARVL 394 D S SG + + + S SPP + RG KGS++ S+K YL + H S Sbjct: 404 DSGSTSGGSKSQSRSRSRSDSPPRQVHRGAPYKGSEVRGSRKSKDCKYLTQKPHKSRS-- 461 Query: 395 RSTSKDKSKT 424 RS+S+ +S++ Sbjct: 462 RSSSRSRSRS 471
>VE2_HPV47 (P22420) Regulatory protein E2| Length = 506 Score = 31.2 bits (69), Expect = 1.3 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 4/97 (4%) Frame = +2 Query: 176 SQDWPISSRREGRSAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKK 355 S+ +SRR GR + + S S + + GN +G++GR GS ++ Sbjct: 311 SRSTSTTSRRGGRGSSTRQRSR-SPSTYTSKRSREGNTRGRG--RGRQGRAGSSGGREQR 367 Query: 356 YLRRS----AHSSARVLRSTSKDKSKTPNEPVSPLRS 454 RRS SS RV R + K + +P+E LRS Sbjct: 368 RRRRSFSTSPDSSKRVRRESPKYRGVSPSEVGKQLRS 404
>RED2_HUMAN (Q9NS39) Double-stranded RNA-specific editase B2 (EC 3.5.-.-)| (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) Length = 739 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +2 Query: 242 TSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYL 361 +++S V+EN+ VGN ++ PP G R R G+ K+ L Sbjct: 63 STSSAEVKENRNVGNLAARPPPSGDRARGGAPGAKRKRPL 102
>PGLRX_COCCA (Q00359) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)| (Galacturan 1,4-alpha-galacturonidase) (Poly(1,4-alpha-D-galacturonide)galacturonohydrolase) Length = 446 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -2 Query: 221 PPTDLLCGN**ASPG-RLRVSLVELLSGGEDDPVNFFRSIEMCRGLAAASAPRAWRF 54 PP L G + PG R + +++ L GG+DD N +++ C P+ +F Sbjct: 36 PPVPFLPGKASSVPGSRNKTCMLKALGGGKDDSANILSAVKQCNNGGHVVFPKGQQF 92
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)| [Contains: Micronuclear linker histone-alpha; Micronuclear linker histone-beta; Micronuclear linker histone-delta; Micronuclear linker histone-gamma] Length = 633 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = +2 Query: 239 KTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 418 K+S+ G ++N K S S + RK + + SKK + RS SK KS Sbjct: 493 KSSSKG--KKNSKSNTRSKSKSKSASKSRKNA--SKSKKDTTNHGRQTRSKSRSESKSKS 548 Query: 419 KTPNEP 436 + PN+P Sbjct: 549 EAPNKP 554
>TWST2_RAT (P97831) Twist-related protein 2| Length = 160 Score = 30.4 bits (67), Expect = 2.3 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = +2 Query: 206 EGRSAVIIYMDK--TSASGLVQENKKVG--------NDSSSPPTKGKRGRKGSQITASKK 355 EG S+ + +D TS L ++ K+ G + PT GKRG+KGS S + Sbjct: 3 EGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFE 62 Query: 356 YLRRSAHSSARVLRST-SKDKSKTPNEPVSPLR 451 L+ S R+L + + ++++ NE + LR Sbjct: 63 ELQ-----SQRILANVRERQRTQSLNEAFAALR 90
>TWST2_MOUSE (Q9D030) Twist-related protein 2 (Dermis expressed protein 1)| (Dermo-1) Length = 160 Score = 30.4 bits (67), Expect = 2.3 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = +2 Query: 206 EGRSAVIIYMDK--TSASGLVQENKKVG--------NDSSSPPTKGKRGRKGSQITASKK 355 EG S+ + +D TS L ++ K+ G + PT GKRG+KGS S + Sbjct: 3 EGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFE 62 Query: 356 YLRRSAHSSARVLRST-SKDKSKTPNEPVSPLR 451 L+ S R+L + + ++++ NE + LR Sbjct: 63 ELQ-----SQRILANVRERQRTQSLNEAFAALR 90
>TWST2_HUMAN (Q8WVJ9) Twist-related protein 2 (Dermis expressed protein 1)| (Dermo-1) Length = 160 Score = 30.4 bits (67), Expect = 2.3 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = +2 Query: 206 EGRSAVIIYMDK--TSASGLVQENKKVG--------NDSSSPPTKGKRGRKGSQITASKK 355 EG S+ + +D TS L ++ K+ G + PT GKRG+KGS S + Sbjct: 3 EGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFE 62 Query: 356 YLRRSAHSSARVLRST-SKDKSKTPNEPVSPLR 451 L+ S R+L + + ++++ NE + LR Sbjct: 63 ELQ-----SQRILANVRERQRTQSLNEAFAALR 90
>YR871_MIMIV (Q5UP41) Hypothetical protein R871| Length = 561 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 284 NDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 418 N SSS RGR + +SKK+ H S++ +S+ +DKS Sbjct: 122 NKSSSKDKSPSRGRSPKRHKSSKKHKSSKKHKSSKHDKSSKRDKS 166
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 30.0 bits (66), Expect = 3.0 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +2 Query: 179 QDWPISSRREGR-SAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKK 355 Q+ ++SRR R SA K+ + ++K + S +KGK + S+++ S++ Sbjct: 320 QEEEVTSRRGSRRSAPTKAKGKSKTASKTSKSKSKASSKSKSKSKGKGQARASKLSKSRR 379 Query: 356 YLRRSAHSSARVLRSTSKDKSKTPNEP 436 Y+ V S+ ++ PN+P Sbjct: 380 YVN-------AVDSSSEEESDYDPNKP 399
>VE2_HPV09 (P36780) Regulatory protein E2| Length = 461 Score = 30.0 bits (66), Expect = 3.0 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = +2 Query: 197 SRREGRSAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQ--ITASKKYLRRS 370 SR +GR+ +T G + + + S+ PT +RGR G + T S+ R Sbjct: 279 SRSKGRT-------ETERGGERRRRGRSSSADSTTPTDRRRGRGGGRGPTTRSQSRSRSR 331 Query: 371 AHSSARVLRSTSKDKSKTPNEPVSPLRS 454 +HS +R T+ +P+E + +RS Sbjct: 332 SHSRSRSRGGTASRVGVSPDEVGTRVRS 359
>YBL7_YEAST (P38213) Protein YBR007C| Length = 736 Score = 30.0 bits (66), Expect = 3.0 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +2 Query: 245 SASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSKT 424 S++ + + + ND S PPT + K S K L +S R+ +K+K Sbjct: 337 SSTSTITKTNTMTNDISLPPTPPYKAHKKKTSLNSLKKLFKSP-------RTRAKNKKDL 389 Query: 425 PNEPVSPLRSA 457 +E SP+RSA Sbjct: 390 ESEGSSPIRSA 400
>MSH6_YEAST (Q03834) MutS protein homolog 6| Length = 1242 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +2 Query: 332 SQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEP-VSPLRS 454 ++ T+ KK+ ++HSS+ R+ S+D SK + P +P RS Sbjct: 211 AETTSKKKFSYNTSHSSSPFTRNISRDNSKKKSRPNQAPSRS 252
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 236 DKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSK 409 D +SA QE+ + PPT+G+ R+G + A RRSA R R+ S+ Sbjct: 245 DNSSAQAPRQEDSRPARARPGPPTRGR--RRGRRPAAPGPASRRSARLRRRQPRTNSR 300
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 236 DKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSK 409 D +SA QE+ + PPT+G+ R+G + A RRSA R R+ S+ Sbjct: 245 DNSSAQAPRQEDSRPARARPGPPTRGR--RRGRRPAAPGPASRRSARLRRRQPRTNSR 300
>SFRS8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Suppressor of| white apricot protein homolog) Length = 951 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 344 ASKKYLR-RSAHSSARVLRSTSKDKSKTPNEPVSPLRSA 457 AS+K R RS H + RS S+ KSK ++ VSP + A Sbjct: 837 ASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQA 875
>GYRA_RICPR (P41080) DNA gyrase subunit A (EC 5.99.1.3)| Length = 905 Score = 29.3 bits (64), Expect = 5.1 Identities = 23/88 (26%), Positives = 42/88 (47%) Frame = +3 Query: 114 KKVNWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKLGMIH 293 K+V + S+K+ K R+GLS+ E + + F+ + H ++ F I K+ + Sbjct: 541 KRVPLSSYRSQKRGGKG-----RSGLSMRDEDITTQV-FVGSTHTPMLFFSNIGKVYSLK 594 Query: 294 HLLLPRGKGEGKGPRLQQVKSISGDLHI 377 LP +GKG + + S+ + HI Sbjct: 595 LYKLPLSNPQGKGRPMVNILSLQENEHI 622
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 29.3 bits (64), Expect = 5.1 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Frame = +2 Query: 248 ASGLVQENKKVGNDS--SSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRST---SKD 412 ASG QE KK G+DS PTK K+ R + S + + + A ++A + S D Sbjct: 255 ASGSDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKAPAAADIFGDADDISDD 314 Query: 413 KSKT-PNEPVSPLRS 454 + + P SP+RS Sbjct: 315 EDEAGPAARKSPVRS 329
>YOJ4_CAEEL (P34627) Hypothetical protein ZK353.4| Length = 305 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = +2 Query: 239 KTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 418 K S + L E K+ N SSS + G +I + KY + + + T+ ++ Sbjct: 159 KNSLTDLKNEATKMANTSSSA---NRTGEISVEIVSPSKYFQCLLPTHNLIPEPTTAVQA 215 Query: 419 KTPNEPVSPLRSA 457 TP +P+S SA Sbjct: 216 STPEKPMSSAESA 228
>CJ047_HUMAN (Q86WR7) Protein C10orf47| Length = 435 Score = 28.9 bits (63), Expect = 6.7 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Frame = +3 Query: 3 SPSCSRRRSREGVLEAAKSPGARCRGRGEAPAHFYRPKKVNWVIFPSRKQFNKAYPKSPR 182 SP+ R R G + G R G P+H +PK FPS + PR Sbjct: 212 SPTSPFREGRPGEWRTPAARGPRSGDPGPGPSHPAQPKAPR---FPSNIIVTNGAAREPR 268 Query: 183 TGLSVPAEKV-GRRSSFIWTKH 245 LS A V RR+ + T H Sbjct: 269 RTLSRAAVSVQERRAQVLATIH 290
>MOXR_PARDE (P29901) Protein moxR| Length = 339 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = -2 Query: 218 PTDLLCGN**ASPGRLRVSLVELLSGGEDDPVNFFRSIEMCR 93 PTDL+ A GR R+ +L GED V FF I R Sbjct: 79 PTDLIYSTHIAEDGRPRIEPGPVLEQGEDMAVFFFNEINRAR 120
>H14_MOUSE (P43274) Histone H1.4 (H1 VAR.2) (H1e)| Length = 218 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/72 (25%), Positives = 31/72 (43%) Frame = +2 Query: 242 TSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSK 421 T ASG + NKK + + P K K + + K +++A ++ + K K Sbjct: 98 TGASGSFKLNKKAASGEAKPKAKRAGAAKAKKPAGAAKKPKKAAGTA-----TAKKSTKK 152 Query: 422 TPNEPVSPLRSA 457 TP + P +A Sbjct: 153 TPKKAKKPAAAA 164
>TTKA_DROME (P42282) Protein tramtrack, alpha isoform (Tramtrack p88)| (Repressor protein fushi tarazu) Length = 813 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = +2 Query: 230 YMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSS 382 Y + + QE+ +++PP + G+KG++ ++ +RR A S+ Sbjct: 531 YQGNEAEATPAQEDSPAAETATAPPPAPRSGKKGAKRPIQRRRVRRKAQST 581
>VE2_HPV5B (P26545) Regulatory protein E2| Length = 514 Score = 28.5 bits (62), Expect = 8.7 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%) Frame = +2 Query: 194 SSRREGRSAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSA 373 S RR RS T +S Q +++ + SP T+G RG +GS+ + LRR Sbjct: 327 SPRRRSRSP------STYSSCTTQRSQRAR--AESPTTRGARGSRGSRGGSRGGRLRRRG 378 Query: 374 HSSA-------RVLRSTSKDKSKTPNEPVSPLRS 454 SS+ R ++K + +P E LRS Sbjct: 379 RSSSSSSPAHKRSRGGSAKLRGVSPGEVGGSLRS 412
>UNC87_CAEEL (P37806) Uncoordinated protein 87 (Protein unc-87)| Length = 576 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +3 Query: 84 GEAPAHFYRPKKVNWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSFIW 236 GE P Y KV+ I PS+ +NK + T P + G+ IW Sbjct: 514 GELP---YEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDVKGKHLKRIW 561
>DBP2_KLULA (Q6CIV2) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 554 Score = 28.5 bits (62), Expect = 8.7 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%) Frame = +2 Query: 179 QDWPISSRREGRSAVIIYMDKTSASGL-------VQENKKVGNDSSSPPTKGKRGRKGSQ 337 +DW ++ R GRS +++ D +A G+ V GN G+ GR GS Sbjct: 399 RDWVLAEFRSGRSPIMVATD-VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGST 457 Query: 338 ITASKKYLRRSAHSSARVLRSTSKDKSKTPNE 433 TA + + A +++ + K P E Sbjct: 458 GTAISFFTEGNKSLGAALIKIMREAKQDIPEE 489 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,882,310 Number of Sequences: 219361 Number of extensions: 1590959 Number of successful extensions: 4254 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4092 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4249 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
