ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197157.1| Oryza sativa (japonica cultivar-group) putative signal tranduction protein (OSJNBa0041P03.2), mRNA Length = 2871 Score = 101 bits (51), Expect = 7e-19 Identities = 87/99 (87%) Strand = Plus / Plus Query: 79 ggcggccaacgtcatgctggcgatccacgataagaaggccgcggccgtcgacctctaccg 138 |||||| ||||| ||||||||||||||||| |||| | || | || |||||||||||| Sbjct: 9 ggcggcgaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccg 68 Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| |||||||||||||||||||||||||| Sbjct: 69 cccgctccgcctctacatcgcctccgcctactcggagcg 107
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 101 bits (51), Expect = 7e-19 Identities = 87/99 (87%) Strand = Plus / Plus Query: 79 ggcggccaacgtcatgctggcgatccacgataagaaggccgcggccgtcgacctctaccg 138 |||||| ||||| ||||||||||||||||| |||| | || | || |||||||||||| Sbjct: 23276 ggcggcgaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccg 23335 Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| |||||||||||||||||||||||||| Sbjct: 23336 cccgctccgcctctacatcgcctccgcctactcggagcg 23374
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 101 bits (51), Expect = 7e-19 Identities = 87/99 (87%) Strand = Plus / Minus Query: 79 ggcggccaacgtcatgctggcgatccacgataagaaggccgcggccgtcgacctctaccg 138 |||||| ||||| ||||||||||||||||| |||| | || | || |||||||||||| Sbjct: 18327494 ggcggcgaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccg 18327435 Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| |||||||||||||||||||||||||| Sbjct: 18327434 cccgctccgcctctacatcgcctccgcctactcggagcg 18327396
>dbj|AK103856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148O10, full insert sequence Length = 3011 Score = 101 bits (51), Expect = 7e-19 Identities = 87/99 (87%) Strand = Plus / Plus Query: 79 ggcggccaacgtcatgctggcgatccacgataagaaggccgcggccgtcgacctctaccg 138 |||||| ||||| ||||||||||||||||| |||| | || | || |||||||||||| Sbjct: 129 ggcggcgaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccg 188 Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| |||||||||||||||||||||||||| Sbjct: 189 cccgctccgcctctacatcgcctccgcctactcggagcg 227
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 101 bits (51), Expect = 7e-19 Identities = 87/99 (87%) Strand = Plus / Minus Query: 79 ggcggccaacgtcatgctggcgatccacgataagaaggccgcggccgtcgacctctaccg 138 |||||| ||||| ||||||||||||||||| |||| | || | || |||||||||||| Sbjct: 18337147 ggcggcgaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccg 18337088 Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| |||||||||||||||||||||||||| Sbjct: 18337087 cccgctccgcctctacatcgcctccgcctactcggagcg 18337049
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 136 ccgcccgctccgccagtacatcgcctccgcctactcggagcg 177 |||||||||||||| ||||||||||||||||||||||||| Sbjct: 18973453 ccgcccgctccgcctccacatcgcctccgcctactcggagcg 18973494
>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22 Length = 68256 Score = 60.0 bits (30), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 136 ccgcccgctccgccagtacatcgcctccgcctactcggagcg 177 |||||||||||||| ||||||||||||||||||||||||| Sbjct: 28774 ccgcccgctccgcctccacatcgcctccgcctactcggagcg 28815
>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0018H09, complete sequence Length = 155329 Score = 54.0 bits (27), Expect = 2e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| ||||||||||||||||||||||||| Sbjct: 129615 cccgctccgcctccacatcgcctccgcctactcggagcg 129653
>gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692E03, complete sequence Length = 74462 Score = 54.0 bits (27), Expect = 2e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| ||||||||||||||||||||||||| Sbjct: 608 cccgctccgcctccacatcgcctccgcctactcggagcg 646
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 2e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 139 cccgctccgccagtacatcgcctccgcctactcggagcg 177 ||||||||||| ||||||||||||||||||||||||| Sbjct: 11227361 cccgctccgcctccacatcgcctccgcctactcggagcg 11227399
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.002 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccgctccgccagtacatcgcctccgcctactcggagc 176 |||||||||| |||||| |||||||||||||||||| Sbjct: 310752 ccgctccgcctctacatcacctccgcctactcggagc 310716
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0009C08, complete sequence Length = 137033 Score = 50.1 bits (25), Expect = 0.002 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccgctccgccagtacatcgcctccgcctactcggagc 176 |||||||||| |||||| |||||||||||||||||| Sbjct: 38280 ccgctccgcctctacatcacctccgcctactcggagc 38244
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.002 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccgctccgccagtacatcgcctccgcctactcggagc 176 |||||||||| |||||| |||||||||||||||||| Sbjct: 310750 ccgctccgcctctacatcacctccgcctactcggagc 310714
>emb|AJ810091.1| Streptomyces fradiae p3 gene for serine protease 3 Length = 3919 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaggccgcggccgtcgacc 131 ||||||||||||||||||||| Sbjct: 829 agaaggccgcggccgtcgacc 849
>emb|Y13432.1|RMPRMNT40 Rhizobium meliloti plasmid pRmNT40 DNA Length = 3748 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgatggcggccaacgtcatg 94 |||||||||||||||||||| Sbjct: 2530 cgatggcggccaacgtcatg 2511
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gcggccaacgtcatgctggcgatc 103 ||||||||||||||||||| |||| Sbjct: 665921 gcggccaacgtcatgctggagatc 665898
>ref|NM_193301.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 342 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 gccgcggccgtcgacctct 134 ||||||||||||||||||| Sbjct: 291 gccgcggccgtcgacctct 309
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aagaaggccgcggccgtcg 128 ||||||||||||||||||| Sbjct: 548397 aagaaggccgcggccgtcg 548415
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aagaaggccgcggccgtcg 128 ||||||||||||||||||| Sbjct: 1867684 aagaaggccgcggccgtcg 1867702
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aagaaggccgcggccgtcg 128 ||||||||||||||||||| Sbjct: 915615 aagaaggccgcggccgtcg 915597
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 gccgcggccgtcgacctct 134 ||||||||||||||||||| Sbjct: 19985250 gccgcggccgtcgacctct 19985268
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 gccgcggccgtcgacctct 134 ||||||||||||||||||| Sbjct: 88159 gccgcggccgtcgacctct 88177
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 ccgatggcggccaacgtca 92 ||||||||||||||||||| Sbjct: 5280264 ccgatggcggccaacgtca 5280246 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 613,125 Number of Sequences: 3902068 Number of extensions: 613125 Number of successful extensions: 37468 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36646 Number of HSP's gapped (non-prelim): 817 length of query: 182 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 160 effective length of database: 17,147,199,772 effective search space: 2743551963520 effective search space used: 2743551963520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
