ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome... 111 2e-21
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 111 2e-21
4gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
5dbj|AK121330.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
7dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
8dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
9dbj|AK102596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
10ref|NM_193869.1| Oryza sativa (japonica cultivar-group), predic... 84 4e-13
11emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chro... 44 0.34
12gb|DQ407755.1| Gymnadenia conopsea unknown mRNA 42 1.3
13gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 1.3
14dbj|AP006435.1| Sus scrofa CC chemokine receptor genes (CCR3, C... 42 1.3
15dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.3
16ref|NM_103212.1| Arabidopsis thaliana unknown protein AT1G35150 ... 40 5.3
17gb|AC156036.4| Mus musculus BAC clone RP23-341B16 from chromosom... 40 5.3
18gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome... 40 5.3
19gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 40 5.3
20gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, co... 40 5.3
21gb|AC024207.1| Caenorhabditis elegans cosmid Y74E4A, complete se... 40 5.3
22gb|AC153794.6| Mus musculus BAC clone RP23-128I24 from chromosom... 40 5.3
23gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome... 40 5.3
24gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome ... 40 5.3
25ref|XM_848728.1| PREDICTED: Canis familiaris similar to myeloid/... 40 5.3
26gb|AC123808.3| Mus musculus BAC clone RP24-165O16 from chromosom... 40 5.3
27gb|AC124601.5| Mus musculus BAC clone RP23-27M3 from chromosome ... 40 5.3
28gb|AC125543.3| Mus musculus BAC clone RP23-360H5 from chromosome... 40 5.3
29gb|AC124511.4| Mus musculus BAC clone RP23-440I16 from chromosom... 40 5.3
30ref|XM_946812.1| Theileria annulata strain Ankara hypothetical p... 40 5.3
31gb|AC165350.3| Mus musculus BAC clone RP23-249A17 from chromosom... 40 5.3
32gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome... 40 5.3
33emb|AL592043.7| Human DNA sequence from clone RP11-281B1 on chro... 40 5.3
34emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chr... 40 5.3
35emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on ch... 40 5.3
36gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 40 5.3
37emb|BX323062.10| Zebrafish DNA sequence from clone DKEYP-38H2 in... 40 5.3
38gb|AC090365.7| Homo sapiens chromosome 18, clone RP11-885L22, co... 40 5.3
39gb|AC022558.9| Homo sapiens chromosome 15, clone RP11-90B9, comp... 40 5.3
40gb|AC122327.5| Mus musculus BAC clone RP23-339D20 from chromosom... 40 5.3
41gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cance... 40 5.3
42gb|AC079605.13|AC079605 Arabidopsis thaliana chromosome 1 BAC T3... 40 5.3
43gb|AC024868.1|AC024868 Caenorhabditis elegans clone Y74E4A, comp... 40 5.3
44gb|AC134462.5| Mus musculus BAC clone RP23-391L12 from chromosom... 40 5.3
45gb|AC134917.5| Mus musculus BAC clone RP23-64B3 from chromosome ... 40 5.3
46gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.3
47gb|AC134254.3| Mus musculus BAC clone RP23-474M18 from 12, compl... 40 5.3
48gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, comple... 40 5.3
49gb|AC127242.3| Mus musculus BAC clone RP24-404P19 from 12, compl... 40 5.3
50emb|CT030250.3| Mouse DNA sequence from clone RP23-285E4 on chro... 40 5.3
51gb|AC134601.4| Mus musculus BAC clone RP23-242M10 from 12, compl... 40 5.3
52gb|AC130824.4| Mus musculus BAC clone RP23-349B5 from 12, comple... 40 5.3
53gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, compl... 40 5.3
54gb|AC132607.4| Mus musculus BAC clone RP23-447F22 from 12, compl... 40 5.3
55gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome 40 5.3 
>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0549G05, complete sequence
          Length = 147182

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Plus

                                                                         
Query: 218   gactatgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaa 277
             ||||||||||||||||||| | |||||||| |  || ||||||||||||||| |||  ||
Sbjct: 73675 gactatgatggagtgcaaccgcgaagaggcctttagggccagggaaattgctttaagaaa 73734

                                                                         
Query: 278   gttggaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatt 337
             | ||||||| |||||||||  |||||||| ||||||||  ||||||||||| |  || ||
Sbjct: 73735 gatggaaaacaaagacttcaatggtgcccaaaagattgttcttaaagctcaaaagctttt 73794

                                         
Query: 338   tccagagcttgagaatatatctcagctg 365
              |||||||||||||| ||||| ||||||
Sbjct: 73795 cccagagcttgagaacatatcccagctg 73822



 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Plus

                                                                          
Query: 223    tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
              ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 107570 tgatggaatgcaacagagaggaggccttcagggccagagaaattgctgtaaagaagctgg 107629

                                                                          
Query: 283    aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
              |||||| |||||| || || ||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 107630 aaaatagagactttgtcggcgcccgcaagatcgcgattaaagctcaaaggctttttcctg 107689

                                     
Query: 343    agcttgagaatatatctcagctg 365
              |||||||||| || || ||||||
Sbjct: 107690 agcttgagaacatctcccagctg 107712



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 226   tggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaaa 285
             |||| ||||||||||||||||||   || |||||  ||||||| || |||||||||||||
Sbjct: 89891 tggaatgcaacagagaagaggctgtaagggccagataaattgcagtgaagaagttggaaa 89950

              
Query: 286   a 286
             |
Sbjct: 89951 a 89951
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Plus

                                                                            
Query: 218      gactatgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaa 277
                ||||||||||||||||||| | |||||||| |  || ||||||||||||||| |||  ||
Sbjct: 20952063 gactatgatggagtgcaaccgcgaagaggcctttagggccagggaaattgctttaagaaa 20952122

                                                                            
Query: 278      gttggaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatt 337
                | ||||||| |||||||||  |||||||| ||||||||  ||||||||||| |  || ||
Sbjct: 20952123 gatggaaaacaaagacttcaatggtgcccaaaagattgttcttaaagctcaaaagctttt 20952182

                                            
Query: 338      tccagagcttgagaatatatctcagctg 365
                 |||||||||||||| ||||| ||||||
Sbjct: 20952183 cccagagcttgagaacatatcccagctg 20952210



 Score =  109 bits (55), Expect = 7e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                            
Query: 223      tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
                ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 20700746 tgatggaatgcaacagagaggaggccttcagtgccagagaaattgctgtaaagaagctgg 20700687

                                                                            
Query: 283      aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
                |||||| |||||| || |||||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 20700686 aaaatagagactttgtcggtgcccgcaagatcgcgattaaagctcaaaggctttttcctg 20700627

                                       
Query: 343      agcttgagaatatatctcagctg 365
                |||||||||| || || ||||||
Sbjct: 20700626 agcttgagaacatctcccagctg 20700604



 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Plus

                                                                            
Query: 223      tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
                ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 20985958 tgatggaatgcaacagagaggaggccttcagggccagagaaattgctgtaaagaagctgg 20986017

                                                                            
Query: 283      aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
                |||||| |||||| || || ||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 20986018 aaaatagagactttgtcggcgcccgcaagatcgcgattaaagctcaaaggctttttcctg 20986077

                                       
Query: 343      agcttgagaatatatctcagctg 365
                |||||||||| || || ||||||
Sbjct: 20986078 agcttgagaacatctcccagctg 20986100



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                            
Query: 226      tggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaaa 285
                |||| ||||||||||||||||||   || |||||  ||||||| || |||||||||||||
Sbjct: 20968279 tggaatgcaacagagaagaggctgtaagggccagataaattgcagtgaagaagttggaaa 20968338

                 
Query: 286      a 286
                |
Sbjct: 20968339 a 20968339



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                            
Query: 226      tggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaaa 285
                |||| ||||||||||||||||||   || | |||  ||||||| || |||||||||||||
Sbjct: 20710333 tggaatgcaacagagaagaggctgtaagggtcagataaattgcagtgaagaagttggaaa 20710274

                 
Query: 286      a 286
                |
Sbjct: 20710273 a 20710273
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Plus

                                                                            
Query: 218      gactatgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaa 277
                ||||||||||||||||||| | |||||||| |  || ||||||||||||||| |||  ||
Sbjct: 21262298 gactatgatggagtgcaaccgcgaagaggcctttagggccagggaaattgctttaagaaa 21262357

                                                                            
Query: 278      gttggaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatt 337
                | ||||||| |||||||||  |||||||| ||||||||  ||||||||||| |  || ||
Sbjct: 21262358 gatggaaaacaaagacttcaatggtgcccaaaagattgttcttaaagctcaaaagctttt 21262417

                                            
Query: 338      tccagagcttgagaatatatctcagctg 365
                 |||||||||||||| ||||| ||||||
Sbjct: 21262418 cccagagcttgagaacatatcccagctg 21262445



 Score =  109 bits (55), Expect = 7e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                            
Query: 223      tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
                ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 21010981 tgatggaatgcaacagagaggaggccttcagtgccagagaaattgctgtaaagaagctgg 21010922

                                                                            
Query: 283      aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
                |||||| |||||| || |||||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 21010921 aaaatagagactttgtcggtgcccgcaagatcgcgattaaagctcaaaggctttttcctg 21010862

                                       
Query: 343      agcttgagaatatatctcagctg 365
                |||||||||| || || ||||||
Sbjct: 21010861 agcttgagaacatctcccagctg 21010839



 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Plus

                                                                            
Query: 223      tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
                ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 21296193 tgatggaatgcaacagagaggaggccttcagggccagagaaattgctgtaaagaagctgg 21296252

                                                                            
Query: 283      aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
                |||||| |||||| || || ||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 21296253 aaaatagagactttgtcggcgcccgcaagatcgcgattaaagctcaaaggctttttcctg 21296312

                                       
Query: 343      agcttgagaatatatctcagctg 365
                |||||||||| || || ||||||
Sbjct: 21296313 agcttgagaacatctcccagctg 21296335



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                            
Query: 226      tggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaaa 285
                |||| ||||||||||||||||||   || |||||  ||||||| || |||||||||||||
Sbjct: 21278514 tggaatgcaacagagaagaggctgtaagggccagataaattgcagtgaagaagttggaaa 21278573

                 
Query: 286      a 286
                |
Sbjct: 21278574 a 21278574



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                            
Query: 226      tggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaaa 285
                |||| ||||||||||||||||||   || | |||  ||||||| || |||||||||||||
Sbjct: 21020568 tggaatgcaacagagaagaggctgtaagggtcagataaattgcagtgaagaagttggaaa 21020509

                 
Query: 286      a 286
                |
Sbjct: 21020508 a 21020508
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>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0093J03, complete sequence
          Length = 200626

 Score =  109 bits (55), Expect = 7e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                        
Query: 223  tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
            ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 7807 tgatggaatgcaacagagaggaggccttcagtgccagagaaattgctgtaaagaagctgg 7748

                                                                        
Query: 283  aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
            |||||| |||||| || |||||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 7747 aaaatagagactttgtcggtgcccgcaagatcgcgattaaagctcaaaggctttttcctg 7688

                                   
Query: 343  agcttgagaatatatctcagctg 365
            |||||||||| || || ||||||
Sbjct: 7687 agcttgagaacatctcccagctg 7665



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                         
Query: 226   tggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaaa 285
             |||| ||||||||||||||||||   || | |||  ||||||| || |||||||||||||
Sbjct: 17394 tggaatgcaacagagaagaggctgtaagggtcagataaattgcagtgaagaagttggaaa 17335

              
Query: 286   a 286
             |
Sbjct: 17334 a 17334
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>dbj|AK121330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118F05, full
           insert sequence
          Length = 3759

 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Plus

                                                                       
Query: 223 tgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttgg 282
           ||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 205 tgatggaatgcaacagagaggaggccttcagggccagagaaattgctgtaaagaagctgg 264

                                                                       
Query: 283 aaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccag 342
           |||||| |||||| || || ||||| ||||| ||  |||||||||| |  || ||||| |
Sbjct: 265 aaaatagagactttgtcggcgcccgcaagatcgcgattaaagctcaaaggctttttcctg 324

                                  
Query: 343 agcttgagaatatatctcagctg 365
           |||||||||| || || ||||||
Sbjct: 325 agcttgagaacatctcccagctg 347
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                            
Query: 222      atgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttg 281
                |||||||||||||||| |||||||||   ||  |||||||| ||||||| ||||||| ||
Sbjct: 15459694 atgatggagtgcaacaaagaagaggccctcaaggccagggatattgctgcaaagaagatg 15459635

                                                                            
Query: 282      gaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttcca 341
                ||||  |||||||| |||||||||  || ||| || ||||||||||| |   | ||||||
Sbjct: 15459634 gaaagcaaagactttgttggtgccaaaaggatcgcgcttaaagctcaaaggatttttcca 15459575

                                 
Query: 342      gagcttgagaatatatc 358
                ||||||||||| |||||
Sbjct: 15459574 gagcttgagaacatatc 15459558
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>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1111C09
          Length = 156393

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                         
Query: 222   atgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttg 281
             |||||||||||||||| |||||||||   ||  |||||||| ||||||| ||||||| ||
Sbjct: 17203 atgatggagtgcaacaaagaagaggccctcaaggccagggatattgctgcaaagaagatg 17144

                                                                         
Query: 282   gaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttcca 341
             ||||  |||||||| |||||||||  || ||| || ||||||||||| |   | ||||||
Sbjct: 17143 gaaagcaaagactttgttggtgccaaaaggatcgcgcttaaagctcaaaggatttttcca 17084

                              
Query: 342   gagcttgagaatatatc 358
             ||||||||||| |||||
Sbjct: 17083 gagcttgagaacatatc 17067
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>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1045D11
          Length = 142320

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                          
Query: 222    atgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttg 281
              |||||||||||||||| |||||||||   ||  |||||||| ||||||| ||||||| ||
Sbjct: 137235 atgatggagtgcaacaaagaagaggccctcaaggccagggatattgctgcaaagaagatg 137176

                                                                          
Query: 282    gaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttcca 341
              ||||  |||||||| |||||||||  || ||| || ||||||||||| |   | ||||||
Sbjct: 137175 gaaagcaaagactttgttggtgccaaaaggatcgcgcttaaagctcaaaggatttttcca 137116

                               
Query: 342    gagcttgagaatatatc 358
              ||||||||||| |||||
Sbjct: 137115 gagcttgagaacatatc 137099
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>dbj|AK102596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098J19, full
           insert sequence
          Length = 3859

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 114/137 (83%)
 Strand = Plus / Plus

                                                                       
Query: 222 atgatggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttg 281
           |||||||||||||||| |||||||||   ||  |||||||| ||||||| ||||||| ||
Sbjct: 428 atgatggagtgcaacaaagaagaggccctcaaggccagggatattgctgcaaagaagatg 487

                                                                       
Query: 282 gaaaataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttcca 341
           ||||  |||||||| |||||||||  || ||| || ||||||||||| |   | ||||||
Sbjct: 488 gaaagcaaagactttgttggtgccaaaaggatcgcgcttaaagctcaaaggatttttcca 547

                            
Query: 342 gagcttgagaatatatc 358
           ||||||||||| |||||
Sbjct: 548 gagcttgagaacatatc 564
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>ref|NM_193869.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3024

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 111/134 (82%)
 Strand = Plus / Plus

                                                                       
Query: 225 atggagtgcaacagagaagaggcttccagagccagggaaattgctgtaaagaagttggaa 284
           ||||||||||||| |||||||||   ||  |||||||| ||||||| ||||||| |||||
Sbjct: 1   atggagtgcaacaaagaagaggccctcaaggccagggatattgctgcaaagaagatggaa 60

                                                                       
Query: 285 aataaagacttcgttggtgcccgaaagattgcacttaaagctcagatcctatttccagag 344
           |  |||||||| |||||||||  || ||| || ||||||||||| |   | |||||||||
Sbjct: 61  agcaaagactttgttggtgccaaaaggatcgcgcttaaagctcaaaggatttttccagag 120

                         
Query: 345 cttgagaatatatc 358
           |||||||| |||||
Sbjct: 121 cttgagaacatatc 134
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>emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chromosome 4, complete
             sequence
          Length = 151967

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 369   tgtgtttgcactgtgcactgtg 390
             ||||||||||||||||||||||
Sbjct: 77935 tgtgtttgcactgtgcactgtg 77914
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>gb|DQ407755.1| Gymnadenia conopsea unknown mRNA
          Length = 1810

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 61  gtttctggtcctgatgcagtaaatt 85
           ||||||||| |||||||||||||||
Sbjct: 476 gtttctggttctgatgcagtaaatt 500
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 34      cgcctgctcatcggcggccac 54
               |||||||||||||||||||||
Sbjct: 2873920 cgcctgctcatcggcggccac 2873940
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>dbj|AP006435.1| Sus scrofa  CC chemokine receptor genes (CCR3, CCR2, CCR5, CCRL2, LTF),
             complete and partial cds, clone: 0479G08
          Length = 144233

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    ttcagtcatagtgtttttgag 106
             |||||||||||||||||||||
Sbjct: 41544 ttcagtcatagtgtttttgag 41564
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 38      tgctcatcggcggccactcca 58
               |||||||||||||||||||||
Sbjct: 2778072 tgctcatcggcggccactcca 2778052
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>ref|NM_103212.1| Arabidopsis thaliana unknown protein AT1G35150 mRNA, complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 tgagaatatatctcagctgc 366
           ||||||||||||||||||||
Sbjct: 662 tgagaatatatctcagctgc 643
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>gb|AC156036.4| Mus musculus BAC clone RP23-341B16 from chromosome 12, complete
             sequence
          Length = 211424

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 11101 tgcactgtgcactgtgcagc 11120
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>gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome 12, complete sequence
          Length = 217016

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 89670 tgcactgtgcactgtgcagc 89651
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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   attttcagtcatagtgtttt 102
            ||||||||||||||||||||
Sbjct: 9638 attttcagtcatagtgtttt 9619
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>gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, complete sequence
          Length = 177623

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   ttgcactgtgcactgtgcag 393
             ||||||||||||||||||||
Sbjct: 75445 ttgcactgtgcactgtgcag 75464
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>gb|AC024207.1| Caenorhabditis elegans cosmid Y74E4A, complete sequence
          Length = 15251

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   taaattttcagtcatagtgttttt 103
            |||||||||||||||||| |||||
Sbjct: 2064 taaattttcagtcatagttttttt 2087
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>gb|AC153794.6| Mus musculus BAC clone RP23-128I24 from chromosome 12, complete sequence
          Length = 208105

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 169810 tgcactgtgcactgtgcagc 169829
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>gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome 12, complete sequence
          Length = 224632

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 36908 tgcactgtgcactgtgcagc 36927
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>gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome 14, complete sequence
          Length = 237561

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    agaagttggaaaataaagac 293
              ||||||||||||||||||||
Sbjct: 119478 agaagttggaaaataaagac 119459
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>ref|XM_848728.1| PREDICTED: Canis familiaris similar to myeloid/lymphoid or
            mixed-lineage leukemia 3 isoform 2 (LOC611094), mRNA
          Length = 4338

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  atctcagctgctatgtgttt 375
            ||||||||||||||||||||
Sbjct: 1502 atctcagctgctatgtgttt 1483
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>gb|AC123808.3| Mus musculus BAC clone RP24-165O16 from chromosome 12, complete
             sequence
          Length = 147844

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 68691 tgcactgtgcactgtgcagc 68672
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>gb|AC124601.5| Mus musculus BAC clone RP23-27M3 from chromosome 12, complete sequence
          Length = 237876

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 159836 tgcactgtgcactgtgcagc 159855
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>gb|AC125543.3| Mus musculus BAC clone RP23-360H5 from chromosome 12, complete sequence
          Length = 184081

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 37257 tgcactgtgcactgtgcagc 37238
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>gb|AC124511.4| Mus musculus BAC clone RP23-440I16 from chromosome 12, complete
             sequence
          Length = 179914

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 32708 tgcactgtgcactgtgcagc 32727
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>ref|XM_946812.1| Theileria annulata strain Ankara hypothetical protein (TA15245)
           partial mRNA
          Length = 2376

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  cggccactccaccgtttctg 67
           ||||||||||||||||||||
Sbjct: 615 cggccactccaccgtttctg 634
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>gb|AC165350.3| Mus musculus BAC clone RP23-249A17 from chromosome 12, complete sequence
          Length = 227048

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 214588 tgcactgtgcactgtgcagc 214607
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>gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome 12, complete sequence
          Length = 216041

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 36385 tgcactgtgcactgtgcagc 36366
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>emb|AL592043.7| Human DNA sequence from clone RP11-281B1 on chromosome Xp21.3-22.12
              Contains part of a novel gene, an arginine/serine-rich
              splicing factor 2 (SFRS2) pseudogene and a CpG island,
              complete sequence
          Length = 184391

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     gtttttgagaaattgatcca 117
              ||||||||||||||||||||
Sbjct: 183241 gtttttgagaaattgatcca 183222
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>emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chromosome X Contains
           part of a novel gene, complete sequence
          Length = 173828

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gtttttgagaaattgatcca 117
           ||||||||||||||||||||
Sbjct: 850 gtttttgagaaattgatcca 831
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>emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on chromosome 9, complete
             sequence
          Length = 108785

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    tttttgagaaattgatccag 118
             ||||||||||||||||||||
Sbjct: 15966 tttttgagaaattgatccag 15985
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete
             sequence
          Length = 211315

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    attttcagtcatagtgtttt 102
             ||||||||||||||||||||
Sbjct: 19765 attttcagtcatagtgtttt 19784
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>emb|BX323062.10| Zebrafish DNA sequence from clone DKEYP-38H2 in linkage group 5,
             complete sequence
          Length = 199133

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   aaattgctgtaaagaagttg 281
             ||||||||||||||||||||
Sbjct: 10953 aaattgctgtaaagaagttg 10934
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>gb|AC090365.7| Homo sapiens chromosome 18, clone RP11-885L22, complete sequence
          Length = 125792

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   ttatctgctgtgaagcttgagtca 155
             |||||||||||||||||| |||||
Sbjct: 58609 ttatctgctgtgaagctttagtca 58586
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>gb|AC022558.9| Homo sapiens chromosome 15, clone RP11-90B9, complete sequence
          Length = 186403

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   agtgcaacagagaagaggct 248
             ||||||||||||||||||||
Sbjct: 31762 agtgcaacagagaagaggct 31781
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>gb|AC122327.5| Mus musculus BAC clone RP23-339D20 from chromosome 12, complete
            sequence
          Length = 217167

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  tgcactgtgcactgtgcagc 394
            ||||||||||||||||||||
Sbjct: 7687 tgcactgtgcactgtgcagc 7706
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>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197909

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    agaaattgatccagatgtgc 124
              ||||||||||||||||||||
Sbjct: 147333 agaaattgatccagatgtgc 147314
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>gb|AC079605.13|AC079605 Arabidopsis thaliana chromosome 1 BAC T32G9 genomic sequence, complete
             sequence
          Length = 104807

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tgagaatatatctcagctgc 366
             ||||||||||||||||||||
Sbjct: 45910 tgagaatatatctcagctgc 45891
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>gb|AC024868.1|AC024868 Caenorhabditis elegans clone Y74E4A, complete sequence
          Length = 14555

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   taaattttcagtcatagtgttttt 103
            |||||||||||||||||| |||||
Sbjct: 2064 taaattttcagtcatagttttttt 2087
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>gb|AC134462.5| Mus musculus BAC clone RP23-391L12 from chromosome 12, complete sequence
          Length = 197870

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 164549 tgcactgtgcactgtgcagc 164568
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>gb|AC134917.5| Mus musculus BAC clone RP23-64B3 from chromosome 12, complete sequence
          Length = 225046

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 137922 tgcactgtgcactgtgcagc 137941
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     tgcgcatccgttatctgctg 141
               ||||||||||||||||||||
Sbjct: 6564415 tgcgcatccgttatctgctg 6564434
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>gb|AC134254.3| Mus musculus BAC clone RP23-474M18 from 12, complete sequence
          Length = 191070

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 147609 tgcactgtgcactgtgcagc 147590
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>gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, complete sequence
          Length = 187465

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    agaaattgatccagatgtgc 124
              ||||||||||||||||||||
Sbjct: 121788 agaaattgatccagatgtgc 121807
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>gb|AC127242.3| Mus musculus BAC clone RP24-404P19 from 12, complete sequence
          Length = 171990

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 151331 tgcactgtgcactgtgcagc 151312
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>emb|CT030250.3| Mouse DNA sequence from clone RP23-285E4 on chromosome 12, complete
              sequence
          Length = 177784

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 130821 tgcactgtgcactgtgcagc 130840
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>gb|AC134601.4| Mus musculus BAC clone RP23-242M10 from 12, complete sequence
          Length = 171767

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 87040 tgcactgtgcactgtgcagc 87059
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>gb|AC130824.4| Mus musculus BAC clone RP23-349B5 from 12, complete sequence
          Length = 178133

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tgcactgtgcactgtgcagc 394
              ||||||||||||||||||||
Sbjct: 122641 tgcactgtgcactgtgcagc 122660
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>gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, complete sequence
          Length = 189692

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tgcactgtgcactgtgcagc 394
             ||||||||||||||||||||
Sbjct: 31112 tgcactgtgcactgtgcagc 31093
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>gb|AC132607.4| Mus musculus BAC clone RP23-447F22 from 12, complete sequence
          Length = 194101

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ttttcagtcatagtgttttt 103
              ||||||||||||||||||||
Sbjct: 163795 ttttcagtcatagtgttttt 163776
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>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aattgatccagatgtgcgca 127
              ||||||||||||||||||||
Sbjct: 526014 aattgatccagatgtgcgca 525995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,980,453
Number of Sequences: 3902068
Number of extensions: 3980453
Number of successful extensions: 81042
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80758
Number of HSP's gapped (non-prelim): 271
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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