ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel al... 30 2.6
2SP3_MOUSE (O70494) Transcription factor Sp3 29 5.8
3ALA1_CANAL (O13368) Agglutinin-like protein ALA1 precursor (Aggl... 29 5.8
4IL7RA_MOUSE (P16872) Interleukin-7 receptor alpha chain precurso... 28 9.9

>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -1

Query: 425  PP*RNESLENXAE-GSSSSMAHPPALRNRTHSP-----AWQSARLSPETATRGPETR 273
            P  R  S    AE G++  M  PP+ R+  HSP     +W S R S  +  R P  +
Sbjct: 1064 PASRRTSSSGSAEPGAAHEMKSPPSARSSPHSPWSAASSWTSRRSSRNSLGRAPSLK 1120



to top

>SP3_MOUSE (O70494) Transcription factor Sp3|
          Length = 783

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 339 AFTCVAVGPPQPGDGDARA 283
           A TC  +GPP PGD D  A
Sbjct: 62  AATCSKIGPPSPGDDDEEA 80



to top

>ALA1_CANAL (O13368) Agglutinin-like protein ALA1 precursor (Agglutinin-like|
           adhesin)
          Length = 1419

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 410 ESLENXAEGSSSSMAHPPALRNRTHSPAWQSARLSPETATRGPE 279
           E++ N  EG+ S +   P     T +  W  +  + ET T GPE
Sbjct: 560 ETITNKPEGTDSVIVKEPYNPTVTTTEFWSESYATTETITNGPE 603



to top

>IL7RA_MOUSE (P16872) Interleukin-7 receptor alpha chain precursor (IL-7R-alpha)|
           (CD127 antigen)
          Length = 459

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 368 AHPPALRNRTHSPAWQSARLSPETATRGPET 276
           A P  L  + H  A  SA  SPET+   PET
Sbjct: 330 AQPEELETQGHRAAVHSANRSPETSVSPPET 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,562,819
Number of Sequences: 219361
Number of extensions: 455857
Number of successful extensions: 1538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top