ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C ... 38 0.012
2I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C ... 38 0.012
3I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C ... 35 0.080
4I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C ... 35 0.080
5I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C ... 33 0.52
6YO43_CAEEL (P34681) Hypothetical protein ZK757.3 33 0.52
7I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C ... 32 0.67
8CRTI_SYNP7 (P26294) Phytoene dehydrogenase (EC 1.14.99.-) (Phyto... 29 7.5

>I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4) (Piwi/argonaute family protein
           meIF2C4)
          Length = 861

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 342 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLKYE 458
           RPG G  G PI+L+ NHF+V +   D   +HY V++K E
Sbjct: 18  RPGLGTVGKPIRLLANHFQVQIPKID--VYHYDVDIKPE 54



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>I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4)
          Length = 861

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 342 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLKYE 458
           RPG G  G PI+L+ NHF+V +   D   +HY V++K E
Sbjct: 18  RPGLGTVGKPIRLLANHFQVQIPKID--VYHYDVDIKPE 54



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>I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Piwi/argonaute family protein
           meIF2C1)
          Length = 857

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 342 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLK 452
           RPG G  G PI+L+ N+F+V +   D   +HY V++K
Sbjct: 26  RPGIGTVGKPIKLLANYFEVDIPKID--VYHYEVDIK 60



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>I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Putative RNA-binding protein
           Q99)
          Length = 857

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 342 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLK 452
           RPG G  G PI+L+ N+F+V +   D   +HY V++K
Sbjct: 26  RPGIGTVGKPIKLLANYFEVDIPKID--VYHYEVDIK 60



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>I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)|
           (eIF-2C 3) (Argonaute-3)
          Length = 860

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 315 SKPRRALIARPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLK 452
           ++P   +  RPG+G  G PI+L+ N F+V +   D +   Y V++K
Sbjct: 11  AQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYL--YEVDIK 54



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>YO43_CAEEL (P34681) Hypothetical protein ZK757.3|
          Length = 1040

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 RALIARPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLKYEDDRPVD 476
           R ++ARPG G  G  I + +N F + LK        Y+V + +   R +D
Sbjct: 84  REVVARPGLGTIGRQIPVKSNFFAMDLKNPKMVVIQYHVEIHHPGCRKLD 133



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>I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)|
           (eIF-2C 3) (Argonaute-3) (Piwi/argonaute family protein
           meIF2C3)
          Length = 860

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 342 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYYVNLK 452
           RPG+G  G PI+L+ N F+V +   D +   Y V++K
Sbjct: 20  RPGYGTMGKPIKLLANCFQVEIPKIDVYL--YEVDIK 54



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>CRTI_SYNP7 (P26294) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 474

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 430 WKNSSVVFNETLK*LVTSCIGFPLLPKPGRAIRALL 323
           WK+ S++FN+  K    S   FP +P P   + A+L
Sbjct: 79  WKSHSMIFNQPTKPGTYSRFDFPDIPAPINGVAAIL 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,235,833
Number of Sequences: 219361
Number of extensions: 907393
Number of successful extensions: 2502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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