ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 147 4e-32
2dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
4dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
5ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 115 1e-22
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
7dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
8ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 84 5e-13
9dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
10ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
15gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 46 0.10
16ref|XM_754661.1| Ustilago maydis 521 hypothetical protein (UM036... 44 0.40
17gb|DQ103310.1| Phytophthora ramorum clone F07,11A microsatellite... 44 0.40
18gb|DQ103308.1| Phytophthora ramorum clone D07,7A microsatellite ... 44 0.40
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.40
21dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
22emb|CT573025.12| Mouse DNA sequence from clone RP23-36H17 on chr... 44 0.40
23gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
24emb|BX059458.1|CNS09I1I Single read from an extremity of a full-... 42 1.6
25emb|BX059457.1|CNS09I1H Single read from an extremity of a full-... 42 1.6
26emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T pl... 42 1.6
27gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.6
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
29ref|XM_307687.2| Anopheles gambiae str. PEST ENSANGP00000017104 ... 42 1.6
30gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.6
31gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
32gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
33gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete se... 40 6.2
34emb|Z68315.1|CEF28C6 Caenorhabditis elegans Cosmid F28C6, comple... 40 6.2
35gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 40 6.2
36emb|BX294150.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.2
37gb|AE005942.1| Caulobacter crescentus CB15 section 268 of 359 of... 40 6.2
38ref|NM_063421.2| Caenorhabditis elegans Cleavage and Polyadenyla... 40 6.2
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
40gb|AC107304.5| Homo sapiens 3 BAC RP11-598F17 (Roswell Park Canc... 40 6.2
41dbj|AP006524.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
42dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
43dbj|AK109974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
44gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
45emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chr... 40 6.2
46gb|AC092957.6| Homo sapiens 3 BAC RP11-635I10 (Roswell Park Canc... 40 6.2
47dbj|D12511.1|MRUPUO M.rubens gene for putrescine oxidase, comple... 40 6.2 
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  147 bits (74), Expect = 4e-32
 Identities = 257/318 (80%)
 Strand = Plus / Plus

                                                                       
Query: 140 ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 199
           |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 117 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 176

                                                                       
Query: 200 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 259
           ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 177 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 236

                                                                       
Query: 260 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 319
            ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 237 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 296

                                                                       
Query: 320 ggtgtcccccggggacgtgcacttcgcccccaagggctccgcccaggtgttactccctgt 379
           ||| |||||||||| ||| || |||   ||| | ||| |||  |||| | | | ||| | 
Sbjct: 297 ggtctcccccgggggcgtccagttcaagccccatggcgccgagcaggagctgcacccagc 356

                                                                       
Query: 380 ggaggttaccagtgcactggaggatgagatcttgattattcgcttcaatgaagtgcttcc 439
           ||||||||||| ||  |  |||||||||||| ||||||| ||||||||||| || |||||
Sbjct: 357 ggaggttaccaatgtgccagaggatgagatcctgattatccgcttcaatgaggttcttcc 416

                             
Query: 440 tctgggggagggaacttt 457
           | | ||||||||||||||
Sbjct: 417 tgtaggggagggaacttt 434
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
           insert sequence
          Length = 3020

 Score =  147 bits (74), Expect = 4e-32
 Identities = 257/318 (80%)
 Strand = Plus / Plus

                                                                       
Query: 140 ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 199
           |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 117 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 176

                                                                       
Query: 200 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 259
           ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 177 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 236

                                                                       
Query: 260 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 319
            ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 237 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 296

                                                                       
Query: 320 ggtgtcccccggggacgtgcacttcgcccccaagggctccgcccaggtgttactccctgt 379
           ||| |||||||||| ||| || |||   ||| | ||| |||  |||| | | | ||| | 
Sbjct: 297 ggtctcccccgggggcgtccagttcaagccccatggcgccgagcaggagctgcacccagc 356

                                                                       
Query: 380 ggaggttaccagtgcactggaggatgagatcttgattattcgcttcaatgaagtgcttcc 439
           ||||||||||| ||  |  |||||||||||| ||||||| ||||||||||| || |||||
Sbjct: 357 ggaggttaccaatgtgccagaggatgagatcctgattatccgcttcaatgaggttcttcc 416

                             
Query: 440 tctgggggagggaacttt 457
           | | ||||||||||||||
Sbjct: 417 tgtaggggagggaacttt 434
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                           
Query: 140     ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 199
               |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 6598438 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 6598497

                                                                           
Query: 200     gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 259
               ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 6598498 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 6598557

                                                                           
Query: 260     ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 319
                ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 6598558 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 6598617

                             
Query: 320     ggtgtcccccgggg 333
               ||| ||||||||||
Sbjct: 6598618 ggtctcccccgggg 6598631



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                          
Query: 399     gaggatgagatcttgattattcgcttcaatgaagtgcttcctctgggggagggaacttt 457
               |||||||||||| ||||||| ||||||||||| || |||||| | ||||||||||||||
Sbjct: 6599279 gaggatgagatcctgattatccgcttcaatgaggttcttcctgtaggggagggaacttt 6599337
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                         
Query: 140   ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 199
             |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 32813 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 32872

                                                                         
Query: 200   gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 259
             ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 32873 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 32932

                                                                         
Query: 260   ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 319
              ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 32933 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 32992

                           
Query: 320   ggtgtcccccgggg 333
             ||| ||||||||||
Sbjct: 32993 ggtctcccccgggg 33006



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 399   gaggatgagatcttgattattcgcttcaatgaagtgcttcctctgggggagggaacttt 457
             |||||||||||| ||||||| ||||||||||| || |||||| | ||||||||||||||
Sbjct: 33654 gaggatgagatcctgattatccgcttcaatgaggttcttcctgtaggggagggaacttt 33712
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score =  115 bits (58), Expect = 1e-22
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                       
Query: 165 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
           |||||||||||||||||| | |||||||| |||||||||||||| || |  |||  ||||
Sbjct: 28  gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 87

                                                                       
Query: 225 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
           |||||||||||||||   ||| | |||  || ||| ||  ||||||||||| ||||||||
Sbjct: 88  gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 147

                                             
Query: 285 acgcgtttcctcgtgctcaacgccgccgacctcg 318
           || || |||||||| |||||||||||||||||||
Sbjct: 148 acccgcttcctcgtcctcaacgccgccgacctcg 181
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  115 bits (58), Expect = 1e-22
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                            
Query: 165      gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
                |||||||||||||||||| | |||||||| |||||||||||||| || |  |||  ||||
Sbjct: 11799304 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 11799363

                                                                            
Query: 225      gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
                |||||||||||||||   ||| | |||  || ||| ||  ||||||||||| ||||||||
Sbjct: 11799364 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 11799423

                                                  
Query: 285      acgcgtttcctcgtgctcaacgccgccgacctcg 318
                || || |||||||| |||||||||||||||||||
Sbjct: 11799424 acccgcttcctcgtcctcaacgccgccgacctcg 11799457



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                            
Query: 165      gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
                ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 11790120 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 11790179

                                                                            
Query: 225      gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
                ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 11790180 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 11790239

                                                  
Query: 285      acgcgtttcctcgtgctcaacgccgccgacctcg 318
                || || |||||||| |||||||||||||||||||
Sbjct: 11790240 acccgcttcctcgtcctcaacgccgccgacctcg 11790273
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score =  115 bits (58), Expect = 1e-22
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                         
Query: 165   gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
             |||||||||||||||||| | |||||||| |||||||||||||| || |  |||  ||||
Sbjct: 42122 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 42181

                                                                         
Query: 225   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
             |||||||||||||||   ||| | |||  || ||| ||  ||||||||||| ||||||||
Sbjct: 42182 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 42241

                                               
Query: 285   acgcgtttcctcgtgctcaacgccgccgacctcg 318
             || || |||||||| |||||||||||||||||||
Sbjct: 42242 acccgcttcctcgtcctcaacgccgccgacctcg 42275



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                         
Query: 165   gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
             ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 32938 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 32997

                                                                         
Query: 225   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
             ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 32998 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 33057

                                               
Query: 285   acgcgtttcctcgtgctcaacgccgccgacctcg 318
             || || |||||||| |||||||||||||||||||
Sbjct: 33058 acccgcttcctcgtcctcaacgccgccgacctcg 33091
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                       
Query: 165 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
           ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 23  gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 82

                                                                       
Query: 225 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
           ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 83  gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 142

                                             
Query: 285 acgcgtttcctcgtgctcaacgccgccgacctcg 318
           || || |||||||| |||||||||||||||||||
Sbjct: 143 acccgcttcctcgtcctcaacgccgccgacctcg 176
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
           insert sequence
          Length = 2985

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                       
Query: 165 gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 224
           ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 24  gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 83

                                                                       
Query: 225 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
           ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 84  gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 143

                                             
Query: 285 acgcgtttcctcgtgctcaacgccgccgacctcg 318
           || || |||||||| |||||||||||||||||||
Sbjct: 144 acccgcttcctcgtcctcaacgccgccgacctcg 177
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
           ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 88  gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 147

                                             
Query: 285 acgcgtttcctcgtgctcaacgccgccgacctcg 318
           || || |||||||| |||||||||||||| ||||
Sbjct: 148 acccgattcctcgtcctcaacgccgccgagctcg 181
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                            
Query: 225      gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
                ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 19014761 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 19014820

                                                  
Query: 285      acgcgtttcctcgtgctcaacgccgccgacctcg 318
                || || |||||||| |||||||||||||| ||||
Sbjct: 19014821 acccgattcctcgtcctcaacgccgccgagctcg 19014854
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 225   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
             ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 99681 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 99740

                                               
Query: 285   acgcgtttcctcgtgctcaacgccgccgacctcg 318
             || || |||||||| |||||||||||||| ||||
Sbjct: 99741 acccgattcctcgtcctcaacgccgccgagctcg 99774
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>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
           insert sequence
          Length = 2975

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
           ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 187 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 246

                                             
Query: 285 acgcgtttcctcgtgctcaacgccgccgacctcg 318
           || || |||||||| |||||||||||||| ||||
Sbjct: 247 acccgattcctcgtcctcaacgccgccgagctcg 280
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 225   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 284
             ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 39548 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 39607

                                               
Query: 285   acgcgtttcctcgtgctcaacgccgccgacctcg 318
             || || |||||||| |||||||||||||| ||||
Sbjct: 39608 acccgattcctcgtcctcaacgccgccgagctcg 39641
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 118   aggcgaccatggcggcggagctggagc 144
             |||||||| ||||||||||||||||||
Sbjct: 86379 aggcgaccgtggcggcggagctggagc 86353
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>ref|XM_754661.1| Ustilago maydis 521 hypothetical protein (UM03607.1) partial mRNA
          Length = 5148

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 105 ccaccgacggccgaggcgaccatggc 130
           ||||||||||||||| ||||||||||
Sbjct: 539 ccaccgacggccgagtcgaccatggc 514
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>gb|DQ103310.1| Phytophthora ramorum clone F07,11A microsatellite 97 sequence
          Length = 312

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 300 ctcaacgccgccgacctcgagg 321
           ||||||||||||||||||||||
Sbjct: 226 ctcaacgccgccgacctcgagg 205
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>gb|DQ103308.1| Phytophthora ramorum clone D07,7A microsatellite 97 sequence
          Length = 303

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 300 ctcaacgccgccgacctcgagg 321
           ||||||||||||||||||||||
Sbjct: 214 ctcaacgccgccgacctcgagg 193
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 140      ggagcagagcgccgagcacttcagggggcaggcg 173
                |||||||||||| ||||| |||||||| ||||||
Sbjct: 12319124 ggagcagagcgcggagcagttcaggggccaggcg 12319091



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 244      tcgctggctcggtgtcggtc 263
                ||||||||||||||||||||
Sbjct: 18027635 tcgctggctcggtgtcggtc 18027616
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 109     cgacggccgaggcgaccatggc 130
               ||||||||||||||||||||||
Sbjct: 5315985 cgacggccgaggcgaccatggc 5316006



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 108     ccgacggccgaggcgaccatggcgg 132
               |||||||||||||||||| ||||||
Sbjct: 2745308 ccgacggccgaggcgaccctggcgg 2745332
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>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 140   ggagcagagcgccgagcacttcagggggcaggcg 173
             |||||||||||| ||||| |||||||| ||||||
Sbjct: 35584 ggagcagagcgcggagcagttcaggggccaggcg 35551
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>emb|CT573025.12| Mouse DNA sequence from clone RP23-36H17 on chromosome 14, complete
             sequence
          Length = 116550

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 22    tttttggttaaagtatataatc 43
             ||||||||||||||||||||||
Sbjct: 75063 tttttggttaaagtatataatc 75042
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088M05, complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 269   cgacgtcgccgcgcccacgcgtttcctcg 297
             |||||||||||||||| |||| |||||||
Sbjct: 97286 cgacgtcgccgcgccctcgcggttcctcg 97258
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>emb|BX059458.1|CNS09I1I Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC4BC04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 920

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  tctctccttccctcacactcc 106
           |||||||||||||||||||||
Sbjct: 405 tctctccttccctcacactcc 425
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>emb|BX059457.1|CNS09I1H Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC4BC04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 925

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 86  tctctccttccctcacactcc 106
           |||||||||||||||||||||
Sbjct: 922 tctctccttccctcacactcc 902
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>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome
          Length = 101016

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 305  cgccgccgacctcgaggtgtc 325
            |||||||||||||||||||||
Sbjct: 1808 cgccgccgacctcgaggtgtc 1788
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 295     tcgtgctcaacgccgccgacctcga 319
               |||||||||||| ||||||||||||
Sbjct: 4430018 tcgtgctcaacgacgccgacctcga 4430042
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 269      cgacgtcgccgcgcccacgcgtttcctcg 297
                |||||||||||||||| |||| |||||||
Sbjct: 18304074 cgacgtcgccgcgccctcgcggttcctcg 18304046
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>ref|XM_307687.2| Anopheles gambiae str. PEST ENSANGP00000017104
           (ENSANGG00000014615), partial mRNA
          Length = 672

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 86  tctctccttccctcacactcc 106
           |||||||||||||||||||||
Sbjct: 474 tctctccttccctcacactcc 454
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    gcggctgccgggcttcgcggc 193
              |||||||||||||||||||||
Sbjct: 373692 gcggctgccgggcttcgcggc 373712
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>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07
              map S790A, complete sequence
          Length = 178523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ctggctcggtgtcggtctcc 266
              ||||||||||||||||||||
Sbjct: 165172 ctggctcggtgtcggtctcc 165191
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>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0095J10 map near S6115, complete sequence
          Length = 123717

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ctggctcggtgtcggtctcc 266
             ||||||||||||||||||||
Sbjct: 90805 ctggctcggtgtcggtctcc 90786
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>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence
          Length = 378763

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     tctctccttccctcacactc 105
              ||||||||||||||||||||
Sbjct: 193567 tctctccttccctcacactc 193548
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>emb|Z68315.1|CEF28C6 Caenorhabditis elegans Cosmid F28C6, complete sequence
          Length = 24032

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   ggcggcggagctggagcaga 147
             ||||||||||||||||||||
Sbjct: 13359 ggcggcggagctggagcaga 13378
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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    gaccatggcggcggagctgg 141
              ||||||||||||||||||||
Sbjct: 394720 gaccatggcggcggagctgg 394739
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>emb|BX294150.1| Pirellula sp. strain 1 complete genome; segment 18/24
          Length = 283050

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     agcatccgacgcttgcaaat 86
              ||||||||||||||||||||
Sbjct: 121403 agcatccgacgcttgcaaat 121422
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>gb|AE005942.1| Caulobacter crescentus CB15 section 268 of 359 of the complete genome
          Length = 10254

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  gcaggcgcggctgccgggct 186
            ||||||||||||||||||||
Sbjct: 4986 gcaggcgcggctgccgggct 4967
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>ref|NM_063421.2| Caenorhabditis elegans Cleavage and Polyadenylation Factor family
           member (cpf-1) (cpf-1) mRNA, complete cds
          Length = 1312

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 ggcggcggagctggagcaga 147
           ||||||||||||||||||||
Sbjct: 131 ggcggcggagctggagcaga 112
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 247      ctggctcggtgtcggtctcc 266
                ||||||||||||||||||||
Sbjct: 13018908 ctggctcggtgtcggtctcc 13018889
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>gb|AC107304.5| Homo sapiens 3 BAC RP11-598F17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179532

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     aaagtgctttttggttaaag 34
              ||||||||||||||||||||
Sbjct: 137237 aaagtgctttttggttaaag 137256
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>dbj|AP006524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0077M23
          Length = 167264

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcgctggctcggtgtcggtc 263
             ||||||||||||||||||||
Sbjct: 23285 tcgctggctcggtgtcggtc 23266
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>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0071G09
          Length = 169148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcgctggctcggtgtcggtc 263
             ||||||||||||||||||||
Sbjct: 93941 tcgctggctcggtgtcggtc 93922
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>dbj|AK109974.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C09, full
           insert sequence
          Length = 4771

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 108 ccgacggccgaggcgaccatggcg 131
           |||||||||||| |||||||||||
Sbjct: 78  ccgacggccgagtcgaccatggcg 55
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 247      ctggctcggtgtcggtctcc 266
                ||||||||||||||||||||
Sbjct: 13099087 ctggctcggtgtcggtctcc 13099068
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>emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chromosome X, complete
             sequence
          Length = 173365

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    atctctccttccctcacact 104
             ||||||||||||||||||||
Sbjct: 47304 atctctccttccctcacact 47323
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>gb|AC092957.6| Homo sapiens 3 BAC RP11-635I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161585

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    aaagcaaagtgctttttggttaaa 33
             |||||||||||||||||| |||||
Sbjct: 50127 aaagcaaagtgctttttgtttaaa 50150
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>dbj|D12511.1|MRUPUO M.rubens gene for putrescine oxidase, complete cds
          Length = 2386

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  gaccatggcggcggagctgg 141
            ||||||||||||||||||||
Sbjct: 1195 gaccatggcggcggagctgg 1214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,136,338
Number of Sequences: 3902068
Number of extensions: 3136338
Number of successful extensions: 68899
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67938
Number of HSP's gapped (non-prelim): 953
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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