>TLL1_CHICK (Q9DER7) Tolloid-like protein 1 precursor (EC 3.4.24.-) (Chicken|
            tolloid-like protein 1) (Metalloprotease colloid)
          Length = 1008

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = +3

Query: 159  INQGNDCG-----CFDGESARRGALGRV-GASVWRPYILTGLKLDFHYVGLEDYYCLTRL 320
            I Q  +C       FDGES +   LGR+ G+ +  P I TG K+   ++  +        
Sbjct: 816  IEQHQECAYDHLEVFDGESEKSPILGRLCGSKIPEPLIATGNKMFLRFIS-DASVQRKGF 874

Query: 321  LKKRSWELGGMTHLDTKP 374
                S E GG    +TKP
Sbjct: 875  QATHSTECGGRLKAETKP 892

>CG12_CANAL (P43062) G1/S-specific cyclin CLN2|
          Length = 465

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 285 VGLEDYYCLTRLLKKRSWELGGMTHL 362
           V L D YC TR++KK+ ++L G+T L
Sbjct: 99  VNLIDRYCSTRIVKKQHYQLLGLTSL 124

>UNC5B_HUMAN (Q8IZJ1) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5|
           homolog 2) (p53-regulated receptor for death and life
           protein 1)
          Length = 945

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 186 FDGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKKRSWELGGMTHLD 365
           F GES  R A+ R+  +V+ P + T L+       LED     + + +    LGG    +
Sbjct: 682 FTGESYSRSAVKRLQLAVFAPALCTSLEYSLRVYCLEDTPVALKEVLELERTLGGYLVEE 741

Query: 366 TKPI 377
            KP+
Sbjct: 742 PKPL 745

>TOP1_ECOLI (P06612) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 865

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 190 MVNRLGEEPWGEWELQFGVL 249
           +VNR+G +PW  WE  + VL
Sbjct: 67  LVNRMGVDPWHNWEAHYEVL 86

>USP_BOMMO (P49700) Protein ultraspiracle homolog (RXR type hormone receptor|
           CF1) (BmCF1)
          Length = 462

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 141 PKAGFRYRHRAAAASQC--GRKEGRKAAAWERGRERPGRVEIDDRM 10
           P++G   ++RA  +S C  G K+      W R     G++EIDD++
Sbjct: 233 PESGVPAKYRAPVSSLCQIGNKQIAALIVWARDIPHFGQLEIDDQI 278

>YET4_YEAST (P40063) Hypothetical 24.4 kDa protein in SSA4-NUP157 intergenic|
           region
          Length = 208

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 24/93 (25%), Positives = 37/93 (39%)
 Frame = +3

Query: 150 WSPINQGNDCGCFDGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKK 329
           +S  N  +D  CFD    +   L R G S  R      L+              TR L +
Sbjct: 2   YSNHNLNSDDCCFDWNEEKAAELQRTGVSFDRSLTPQSLRTS------------TRRLSE 49

Query: 330 RSWELGGMTHLDTKPISIGGSPIMTNHLKRPQE 428
            + +  G  H+DT P  +  S I+++   R Q+
Sbjct: 50  ENKQQSGTMHIDTSPSVV--SDIISSRRDRSQD 80

>C13A3_CAEEL (Q27517) Putative cytochrome P450 CYP13A3 (EC 1.14.-.-)|
          Length = 520

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 189 DGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKKRSWELGGMTHLDT 368
           D ++  +GA    G     P I  G++L +    +E+   L ++LKK S E    TH+  
Sbjct: 445 DEQAVAKGAYLPFGLG---PRICIGMRLAY----MEEKMLLAQILKKYSLETTFETHIPL 497

Query: 369 KPISIGGSPIMTNHLK-RPQELD 434
           K + I  +     HLK +P+  D
Sbjct: 498 KLVGIATTAPTNVHLKLKPRHSD 520

>UNC5B_MOUSE (Q8K1S3) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5|
           homolog 2)
          Length = 945

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 186 FDGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKKRSWELGGMTHLD 365
           F GES  R A+ R+  +++ P + T L+       LED     + + +    LGG    +
Sbjct: 682 FMGESYSRSAVKRLQLAIFAPALCTSLEYSLRVYCLEDTPVALKEVLELERTLGGYLVEE 741

Query: 366 TKPI 377
            KP+
Sbjct: 742 PKPL 745

>TOP1_SALTY (P0A2I1) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 865

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 190 MVNRLGEEPWGEWELQFGVL 249
           +VNR+G +PW  W+  + VL
Sbjct: 67  LVNRMGVDPWHNWDAHYEVL 86

>TOP1_SALTI (P0A2I2) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 865

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 190 MVNRLGEEPWGEWELQFGVL 249
           +VNR+G +PW  W+  + VL
Sbjct: 67  LVNRMGVDPWHNWDAHYEVL 86

>RPE_CHLPN (Q9Z8Z9) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)|
           (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E)
          Length = 229

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 14  LSSISTRPGLSLPRSHAAAFLPSFLPHCDAAAALCRY 124
           +     + GL+     +  FLPSFLP CD    +  Y
Sbjct: 108 IKKCGVQAGLAFSPDTSIEFLPSFLPFCDVVVLMSVY 144

>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)|
          Length = 1002

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 18  RRFPRARASPSHAPTPPLFFLPSFHIATPP 107
           R FP       H P PP+   P  H+  PP
Sbjct: 195 REFPAHHEPGEHMPPPPMHHKPGEHMPPPP 224

>TAB3_MOUSE (Q571K4) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 3 (TAK1-binding protein 3)
          Length = 716

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 27  PRARASPSHAPTPPLFFLPSFHIATPPRP 113
           P   +SP H   PP    PS H+  PP P
Sbjct: 301 PSPFSSPQHQVQPPQLGHPSSHVFMPPSP 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,422,382
Number of Sequences: 219361
Number of extensions: 1320461
Number of successful extensions: 3805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3804
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)