ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30g10 |
|---|---|
| Clone Library Name | barley_pub |
>NFYB2_ORYSA (Q5QMG3) Nuclear transcription factor Y subunit B-2 (OsNF-YB-2)| (Transcriptional activator HAP3A) Length = 178 Score = 45.8 bits (107), Expect = 3e-05 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Frame = +2 Query: 167 SGSPTAGGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 SGSP G E+ FLP A+I RI +KA P NG+I ++A +Q VSEF+ Sbjct: 23 SGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFI 74
>NFYB1_ARATH (Q9SLG0) Nuclear transcription factor Y subunit B-1 (AtNF-YB-1)| (Transcriptional activator HAP3A) Length = 141 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 3/47 (6%) Frame = +2 Query: 182 AGGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 +GGS E+ +LP A+I RI +KA PPNG+I ++A VQ VSEF+ Sbjct: 15 SGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFI 61
>NFYB_MAIZE (P25209) Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box| DNA-binding protein subunit B) Length = 179 Score = 45.4 bits (106), Expect = 3e-05 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 6/55 (10%) Frame = +2 Query: 167 SGSPTAGG---SRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 SGSP GG S E+ FLP A+I RI +KA P NG+I ++A VQ VSEF+ Sbjct: 17 SGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFI 71
>NFYB4_ORYSA (Q65XK1) Nuclear transcription factor Y subunit B-4 (OsNF-YB-4)| (Transcriptional activator HAP3C) Length = 143 Score = 43.1 bits (100), Expect = 2e-04 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +2 Query: 170 GSPTAGGSRDERGAFLPFADIRRITRKATPPNGEI---DEEAVQGLVSEFV 313 G GG E+ FLP A+I RI R+A P NG+I +E+VQ VSEF+ Sbjct: 12 GGGGGGGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFI 62
>NFYB3_ORYSA (Q60EQ4) Nuclear transcription factor Y subunit B-3 (OsNF-YB-3)| (Transcriptional activator HAP3B) Length = 185 Score = 42.4 bits (98), Expect = 3e-04 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +2 Query: 170 GSPTAGGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 G GG E+ FLP A+I RI +KA P NG+I ++A VQ VSEF+ Sbjct: 28 GGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFI 78
>NFYB3_ARATH (O23310) Nuclear transcription factor Y subunit B-3 (AtNF-YB-3)| (Transcriptional activator HAP3C) Length = 161 Score = 38.9 bits (89), Expect = 0.003 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Frame = +2 Query: 167 SGSPTAGG--SRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 SG GG S E+ FLP A++ RI +KA P N +I ++A VQ VSEF+ Sbjct: 8 SGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 61
>NFYB7_ARATH (Q9SIT9) Nuclear transcription factor Y subunit B-7 (AtNF-YB-7)| Length = 215 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 8/56 (14%) Frame = +2 Query: 170 GSPTA-----GGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 GSP++ + E+ FLP A++ RI +K P NG+I ++A VQ VSEF+ Sbjct: 21 GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFI 76
>NFYB8_ARATH (Q8VYK4) Nuclear transcription factor Y subunit B-8 (AtNF-YB-8)| Length = 173 Score = 37.4 bits (85), Expect = 0.009 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%) Frame = +2 Query: 170 GSPTAGGSRD-------ERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 GS +GG + E+ FLP A+I RI ++ P NG+I ++A VQ VSEF+ Sbjct: 13 GSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFI 70
>NFYB2_ARATH (Q9FGJ3) Nuclear transcription factor Y subunit B-2 (AtNF-YB-2)| (Transcriptional activator HAP3B) Length = 190 Score = 35.8 bits (81), Expect = 0.026 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Frame = +2 Query: 200 ERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 E+ FLP A++ RI +KA P N +I ++A +Q VSEF+ Sbjct: 27 EQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFI 67
>NFYBA_ARATH (Q67XJ2) Nuclear transcription factor Y subunit B-10 (AtNF-YB-10)| Length = 176 Score = 35.4 bits (80), Expect = 0.034 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 10/58 (17%) Frame = +2 Query: 170 GSPTAGGSRD-------ERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313 GS +GG + E+ FLP A+I RI ++ P NG+I ++A +Q VSEF+ Sbjct: 12 GSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 35.0 bits (79), Expect = 0.045 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -2 Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAG--GLDMPSRRLRKGTIGQPDRNPKPLERE 49 +G N P+ + P GLP R PP P G+ G G+ +P + +G G+P P E+ Sbjct: 120 RGLNGPKGDIGP--AGLPGPRGPPGPPGIPGPAGISVPGKPGPQGPTGEPGPRGFPGEKG 177 Query: 48 AS 43 S Sbjct: 178 TS 179
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 34.7 bits (78), Expect = 0.059 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = -2 Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61 KG + PP +G+P +R +G+AG P + KG+IG P P Sbjct: 1043 KGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSP 1096
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQP 79 KG P+ P VG+P PP P G+ G L +P G +G P Sbjct: 2359 KGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFP 2406
>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor| Length = 680 Score = 31.6 bits (70), Expect = 0.50 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = -2 Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAG--GLDMPSRRLRKGTIGQPDRNPKPLERE 49 +G P+ + P GLP R PP P G+ G G+ +P + ++G G P P E+ Sbjct: 120 RGPYGPKGDVGP--AGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKG 177 Query: 48 A 46 A Sbjct: 178 A 178
>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor| Length = 680 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -2 Query: 177 GLPLMRLPPSPEGLAG--GLDMPSRRLRKGTIGQPDRNPKPLEREA 46 GLP R PP P G+ G G+ +P + ++G G P P E+ A Sbjct: 133 GLPGPRGPPGPPGIPGPAGISVPGKPGQQGLTGAPGPRGFPGEKGA 178
>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor| Length = 1603 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Frame = -2 Query: 207 PRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPK-PLEREASVGDT 31 P + LP GLP R PP P G G P + G +G P + P R+ G T Sbjct: 795 PGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQT 854
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Frame = -2 Query: 240 MRLISAKGRNAPRSSLLPPAVGLPLMRLPPSPEGL-----AGGLDMPSRRLRKGTIGQPD 76 M + AKG P+ + P +G+P + PP P GL GG +P + KG D Sbjct: 172 MGMPGAKGEIGPKGEIGP--MGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKG-----D 224 Query: 75 RNPK 64 R PK Sbjct: 225 RGPK 228
>GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR-alpha-3)| Length = 400 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 192 LPPAVGLPLMRLPPSPEGLAGGLDMPS 112 LPP V + L+ LPPSP LA G +P+ Sbjct: 10 LPPVVLMLLLLLPPSPLPLAAGDPLPT 36
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 29.3 bits (64), Expect = 2.5 Identities = 32/107 (29%), Positives = 35/107 (32%), Gaps = 14/107 (13%) Frame = -2 Query: 339 PNGDLRAAGXXXXXXXXXXXXXXSPLGGVAFLVMR-LISAKGRNAPRSSLLPPAV----- 178 P GD G PLG R L G PR S P V Sbjct: 922 PKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESG 981 Query: 177 -----GLPLMRLPPSPE---GLAGGLDMPSRRLRKGTIGQPDRNPKP 61 GL R PP P+ GLAG P R G+ G P R+ P Sbjct: 982 KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSP 1028
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = -2 Query: 228 SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLERE 49 S +G+ P PP +G + PP P G G P + ++ P P P Sbjct: 1139 SIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198 Query: 48 ASVGDTLGV 22 ++G + GV Sbjct: 1199 GTMGASSGV 1207
>STRN4_HUMAN (Q9NRL3) Striatin-4 (Zinedin)| Length = 753 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 237 RLISAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGG 127 R+ S GR+ + + P+ G P R PP P GL+GG Sbjct: 198 RVRSLLGRSLELNGAVEPSEGAP--RAPPGPAGLSGG 232
>RGS3_MOUSE (Q9DC04) Regulator of G-protein signaling 3 (RGS3) (C2PA)| Length = 966 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Frame = -2 Query: 225 AKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDM-------PSRRLRKGTIGQPDRNP 67 A +N LPP LP + P + L G D+ PS+ L G P ++P Sbjct: 423 APSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDP 482 Query: 66 KPLEREASVGDTL 28 P +E VG L Sbjct: 483 SP-SQELPVGQDL 494
>IF2_CORJK (Q4JV51) Translation initiation factor IF-2| Length = 922 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -2 Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPE-GLAGGLDMPSRRLRKGTIGQPDRNPKP 61 G APR + P + G P R P P G AG DMP R G G PKP Sbjct: 165 GGRAPRVANNPFSSGAPAERPAPRPRGGQAGPGDMPRPGSRPG--GAKKAGPKP 216
>TRA1_CAEEL (P34708) Sex-determining transformer protein 1 (Hermaphrodization| of XO animals protein 2) Length = 1110 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = -2 Query: 234 LISAKGRNAPRSSLLPPAVG---LPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPK 64 L+ A+ +P S LLPP+ + +++ PP+P +A D+ + R + P Sbjct: 513 LLGAQSLLSPFSPLLPPSRAPNVMAMLQTPPTPTSVAPMFDIMTSRAPMAPVVSAPTAPA 572 Query: 63 PL 58 PL Sbjct: 573 PL 574
>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219| Length = 722 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -2 Query: 225 AKGRNAPRSSLLPPAVGLPLMRLPPSP--EGLAG-GLDMP 115 A+GR P++ PP +P PPSP EG G GL P Sbjct: 673 ARGRRPPQADASPPYARVPSGETPPSPSQEGEEGSGLSRP 712
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = -2 Query: 201 SSLLPPAVGLP-----LMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASV 40 S+ +PPA LP ++ PP P L GG+ PS L GT P P PL A + Sbjct: 568 SAAVPPAPPLPGDSGTVIPPPPPPPPLPGGVVPPSPPLPPGTCIPP---PPPLPGGACI 623
>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor| Length = 743 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 240 MRLISAKGRNAPRSSLLPPAVGLPLMRLPPSPEGL-----AGGLDMPSRRLRKGTIGQPD 76 M + AKG P+ + P +G+P + PP P GL GG +P + KG G P Sbjct: 172 MGMPGAKGEIGPKGEIGP--MGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERG-PK 228 Query: 75 RNPKP 61 P P Sbjct: 229 GPPGP 233
>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1) Length = 663 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = -2 Query: 240 MRLISAKGRNAPR----SSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGT 91 ++L++A + P L+ PA G+PL RLPPS A + R+G+ Sbjct: 300 LKLLAALQTDGPHLGTPEPLMGPAAGIPLPRLPPSTSESAATGSEAATAAREGS 353
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -2 Query: 177 GLPLMRLPPSPEGLAGGLDMP-SRRLRKGTIGQPDRNPKP 61 GLP R PP P G+ G P + KG G+P + KP Sbjct: 261 GLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP 300
>K0084_HUMAN (Q14699) Protein KIAA0084 (HA2022) (Fragment)| Length = 648 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = -2 Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASV 40 GRN P +PL + P SP G G ++ + + K T+ P+ NP + E Sbjct: 286 GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK-TLDGPESNPLEVHEEPLS 344 Query: 39 G 37 G Sbjct: 345 G 345
>DDR1_RAT (Q63474) Epithelial discoidin domain-containing receptor 1| precursor (EC 2.7.10.1) (Epithelial discoidin domain receptor 1) (Tyrosine kinase DDR) (Discoidin receptor tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell adhesion kinase) (Protein- Length = 910 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%) Frame = -2 Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNP--------KPLEREASVGD 34 P G P P P G A L P+ RL T +P R P KP +A GD Sbjct: 484 PRPRGTPTHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAKPTNTQACSGD 543 Query: 33 TLGVER 16 + E+ Sbjct: 544 YMEPEK 549
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 17 LSTPKVSPTLASRSKGLGFRSG*PIVPLRRRREG 118 ++TPKV P A+ S GLG + G ++ R R G Sbjct: 2861 IATPKVEPAPAANSLGLGLKPGQSMMGSRDTRMG 2894
>FTHS_LACJO (Q74JC1) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 557 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 165 MRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASVGDTLGVE 19 + L P+ L G+D+ R LRK TIGQ R +E EAS T+ E Sbjct: 156 LELDPNRILLKRGIDVNDRTLRKITIGQGSRF-NGIEHEASFAITVANE 203
>BRO1_CANGA (Q6FJG8) Vacuolar protein-sorting protein BRO1 (BRO| domain-containing protein 1) Length = 888 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = -2 Query: 198 SLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61 +++PP+ LPP P + +D + + G++ P R P+P Sbjct: 723 NVIPPS-------LPPQPRNVGSSIDSQFQSMNLGSVPTPQRFPQP 761
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -2 Query: 177 GLPLMRLPPSPEGLAGGLDMP-SRRLRKGTIGQPDRNPKP 61 GLP R PP P G+ G P + KG G+P + KP Sbjct: 261 GLPGDRGPPGPPGIRGPPGPPGGMKGEKGEQGEPGKRGKP 300
>YMI3_YEAST (Q04526) Hypothetical 47.3 kDa protein in TUB1-CPR3 intergenic| region Length = 418 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 210 APRSSLLPPAVGLPLMRLPPSP 145 AP L P A+ LP ++LPPSP Sbjct: 102 APSPPLAPVAIKLPDLKLPPSP 123
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = -2 Query: 171 PLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASVGDTLGVERRRAV 4 P PP P G D P R +G +G+ + P ++E D + R RA+ Sbjct: 555 PAATQPPPPSGAGKSGDEPGRPRSRGPVGRTEPGEGP-QQEIKRRDQFPLTRSRAI 609
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 186 PAVGLP--LMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61 PAV P L+ PP PEG AG + P + G +G P P Sbjct: 388 PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPP 431
>KI21B_MOUSE (Q9QXL1) Kinesin family member 21B (Kinesin-like protein KIF6)| Length = 1668 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 246 LVMRLISAKGRNAPRSSLLPPAVGLPLMRLPPSP 145 L R+++ KGR P L PP + LP++ P P Sbjct: 1624 LPRRVLAIKGRAPPCPDLPPPPLTLPILPFPVFP 1657
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPEGLAG 130 G +PR L+P P +L P PEG AG Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAG 135
>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1796 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = -2 Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEG-----LAGGLDMPSRRLRKGTIGQP 79 KG + PR +GLP + PP P+G + G MP + KG G P Sbjct: 1485 KGPDGPRGE-----IGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLP 1532
>MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37)| (Cytosine-specific methyltransferase DsaV) (M.DsaV) Length = 351 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%) Frame = -2 Query: 135 AGGLDMPSRRLRKGTIGQPDRN--------PKPLEREASVGDTLGVE 19 A ++P +R R +G D+N PKP+E A VGD L E Sbjct: 148 ATDFNLPQKRERIFIVGFQDKNNKNLIFDFPKPIELTAKVGDLLEKE 194
>TBX22_MOUSE (Q8K402) T-box transcription factor TBX22 (T-box protein 22)| Length = 517 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 228 SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGL 136 S+ G +P +SLL P+ P++ +PPS G+ Sbjct: 324 SSGGAPSPLNSLLSPSCSPPMVYIPPSSFGM 354
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/56 (28%), Positives = 23/56 (41%) Frame = -2 Query: 228 SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61 S G+ +LP V P+ ++PPSP G LD + + P P P Sbjct: 390 SPPGKATGPRPVLPVCVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPP 445
>DDR1_MOUSE (Q03146) Epithelial discoidin domain-containing receptor 1| precursor (EC 2.7.10.1) (Epithelial discoidin domain receptor 1) (Tyrosine kinase DDR) (Discoidin receptor tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell adhesion kinase) (Protei Length = 911 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%) Frame = -2 Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNP--------KPLEREASVGD 34 P G P P P G A L P+ RL T +P R P KP +A GD Sbjct: 485 PRPRGTPPHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAKPTNTQACSGD 544 Query: 33 TLGVER 16 + E+ Sbjct: 545 YMEPEK 550
>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1| kinase) (SAD1A) Length = 794 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 161 RISGSPTAGGSRDERGAFLPFADIRRITRKATPPNGEIDEEAVQGLVS 304 +I P G + E L A RR+ ++ P NGE+D + ++ + S Sbjct: 294 QIQKHPWYLGGKHEPDPCLEPAPGRRVAMRSLPSNGELDPDVLESMAS 341
>PYRD_PSEAE (Q9HZF8) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 342 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -2 Query: 246 LVMRLISAKGRNAPRSSLLPPAVGLPLMRLP---PSPEGLAGGLD 121 L + LI A GR L P LP+ L P+P GLA GLD Sbjct: 20 LSIDLIGAGGRLGLNRLLTPKPASLPVSVLGLEFPNPVGLAAGLD 64
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/71 (25%), Positives = 27/71 (38%) Frame = -2 Query: 228 SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLERE 49 S +G P PP +G + PP P G G P + ++ P P P Sbjct: 1394 SIRGPPGPPGRQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPP 1453 Query: 48 ASVGDTLGVER 16 ++G + G R Sbjct: 1454 GAMGASAGQVR 1464
>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -2 Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRN--PKPLEREAS 43 P + G+PL PSP+ L G + + +++ + + G PD + +PLE+ S Sbjct: 446 PLSAGIPL----PSPQDLMGRILVKNKKRHRPSTGVPDSSVRKRPLEQSNS 492
>TGBR3_PIG (P35054) TGF-beta receptor type III precursor (TGFR-3)| (Transforming growth factor beta receptor III) (Betaglycan) Length = 848 Score = 27.7 bits (60), Expect = 7.2 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -2 Query: 207 PRSSLLPPAVGLPLMRLPPSPEGLA--GGLDMP----SRRLRKGTIGQPDRNPKP 61 P +L LP++ PPS EG A GGL P RR R+ G DR P+P Sbjct: 371 PELQILLDPGALPVLDHPPSGEGAARHGGLPFPFPYIPRRGRQD--GGKDRLPRP 423
>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6| Length = 278 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Frame = -2 Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPE---GLAGGLDMPSRRLRKGTIGQPDRNPKP 61 G+N RS+ P A G P + P + G AG P G GQP N +P Sbjct: 194 GQNGQRSTGTPGAAGAPGPQGPVGSDGQPGSAGAPGAPGPAGAPGVDGQPGANGQP 249
>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) (CP4) Length = 374 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 7/54 (12%) Frame = -2 Query: 219 GRNAPRSSLLPPAV-------GLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQP 79 GR PR P + GLP R P P+G G P + +G +G P Sbjct: 54 GREGPRGEKGDPGLPGPMGLSGLPGPRGPVGPKGENGSAGEPGPKGERGLVGPP 107
>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = -2 Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDR--NPKPLEREAS 43 P A G+PL PSP+ L G + + +++ + + G PD +PLE+ S Sbjct: 446 PLAPGVPL----PSPQDLMGRILVKNKKRHRPSAGGPDSAGRKRPLEQSNS 492
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 27.3 bits (59), Expect = 9.4 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%) Frame = -2 Query: 234 LISAKGRNAPRSSLLPPAVGLPLMRLP------PSPEGLAGG-LDMPSRRLRKGTIGQPD 76 L+S G PR L PP G P+ +P P P L GG L P + + D Sbjct: 334 LLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLD 393 Query: 75 RNPKPLE----REASVGDTLGVERR 13 + PL+ R+ D G+E R Sbjct: 394 QRGPPLDGRGGRDPRGIDARGMEAR 418
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 27.3 bits (59), Expect = 9.4 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%) Frame = -2 Query: 234 LISAKGRNAPRSSLLPPAVGLPLMRLP------PSPEGLAGG-LDMPSRRLRKGTIGQPD 76 L+S G PR L PP G P+ +P P P L GG L P + + D Sbjct: 334 LLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLD 393 Query: 75 RNPKPLE----REASVGDTLGVERR 13 + PL+ R+ D G+E R Sbjct: 394 QRGPPLDGRGGRDPRGIDARGMEAR 418
>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand| and one amino acid protein 2) Length = 1055 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = -2 Query: 207 PRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASVGDT 31 P + PPA P + PP P G S R G + +P+PL R AS G + Sbjct: 965 PPPGMPPPAWRQPALLAPPGPPNWLGP-PTQSGTPRGGALLLLRNSPQPLRRAASGGSS 1022 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,471,553 Number of Sequences: 219361 Number of extensions: 827761 Number of successful extensions: 3248 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 2764 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3230 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
