ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30g09 |
|---|---|
| Clone Library Name | barley_pub |
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 34.7 bits (78), Expect = 0.14 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 317 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGTAYDEM 469 GS+SE E + D NRYL ++D DD+DT+ RV++ K ++EM Sbjct: 10 GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTDTK--RVVKPAKDKRFEEM 63
>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 935 Score = 32.7 bits (73), Expect = 0.53 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Frame = +2 Query: 245 MASRFWGQGXXXXXXXXX-XXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTE 421 M SRF+ QG + SD+E + G K++YL D D D Sbjct: 1 MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNG----KSKYLAGGNADDSDDDDG 56 Query: 422 SHRVIRSLKGTAYDEM 469 RV++S K +DEM Sbjct: 57 QKRVVKSAKDKRFDEM 72
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 32.3 bits (72), Expect = 0.70 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 320 SDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGTAYDEM 469 S SE S AG G GS + + + D D+ D R + L+G +D + Sbjct: 694 SSSESSAAGLGALSGSPSHRTSAWLDDGDELDFSPPRCLEGLRGLDFDPL 743
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 32.0 bits (71), Expect = 0.91 Identities = 17/69 (24%), Positives = 24/69 (34%) Frame = +2 Query: 263 GQGXXXXXXXXXXXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRS 442 G S SE S G G GS + + + D DD D R + Sbjct: 697 GSCESLSSSSSSSSSSSSSSSSESSAGGLGPLSGSPSHRTSAWLDDGDDLDFSPPRCLEG 756 Query: 443 LKGTAYDEM 469 L+G +D + Sbjct: 757 LRGLDFDPL 765
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Frame = -2 Query: 473 ASSHHTLSPSTSESRGGSQYQSHHCLVYICSDNGSWTHRVPHHQLLISRYHSLVL----- 309 +S H ++P++ S Q H + + S +V HHQLL+ + + Sbjct: 283 SSIHQLIAPASY-----SPIQPHSLIKHQQIPLHSPPPKVSHHQLLLQQQQQQIQPITLQ 337 Query: 308 TRSRPHPPQSHCLPVPKN 255 + S+ PP HC+P+P + Sbjct: 338 SPSQDPPPSQHCIPLPNH 355
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -2 Query: 407 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 261 HH ++ + S S +H +P ++H ++ +P PPQ +PVP Sbjct: 47 HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89
>GCP_HALMA (P36174) Putative O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Glycoprotease) Length = 548 Score = 30.8 bits (68), Expect = 2.0 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = +2 Query: 350 GGRDGSKNRY------LNKYTQDSDDSDTESHRVIRSLKGTAYDEMKLL 478 GGRD +R L YTQ+++D + H + +SL GTA D LL Sbjct: 469 GGRDEQADRTTLIDFGLGYYTQEAEDHAMDLHVLAQSLAGTADDPETLL 517
>OAZ1_MESAU (P70112) Ornithine decarboxylase antizyme (ODC-Az)| Length = 221 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -2 Query: 485 RSAVASSHHTLSPSTSESRGGSQYQSHHCLVYICSDNG---SWTHRVPHHQLLI 333 RSA + T+ + SRGG +S ++ CS+ G W VPH L I Sbjct: 23 RSATLHASRTMPLLSQHSRGGCSSESSRAALHCCSNLGPGPRWCSYVPHPPLKI 76
>OAZ1_RAT (P54370) Ornithine decarboxylase antizyme (ODC-Az)| Length = 226 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -2 Query: 485 RSAVASSHHTLSPSTSESRGGSQYQSHHCLVYICSDNG---SWTHRVPHHQLLI 333 RSA + T+ + SRGG +S ++ CS+ G W VPH L I Sbjct: 23 RSATLHASRTMPLLSQHSRGGCSSESSRVALHCCSNLGPGPRWCSDVPHPPLKI 76
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 344 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 243 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 344 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 243 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 344 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 243 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 430 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +3 Query: 210 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 344 +QLK +K++ L+ GD +ET+T++ M+T+ +N +I K+ Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414
>ERB1_YEAST (Q04660) Eukaryotic ribosome biogenesis protein 1| Length = 807 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +2 Query: 398 DSDDSDTESHRVIRSLKGTAYDEM 469 DSDDSD E+ I ++ +AYDEM Sbjct: 145 DSDDSDAETQNTIGNIPLSAYDEM 168
>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)| (x.MCM7) Length = 720 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +2 Query: 149 NSPFSAGSEPHPLHGRDPSLKTVEGNLQAAAAMASRF 259 N+ S + +P +GR KTVE N+Q AA+ SRF Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 29.3 bits (64), Expect = 5.9 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%) Frame = -2 Query: 353 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 258 PH L +S+ HSL++TR PH P S +CLP+P+ Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274
>CT012_HUMAN (Q9NVP4) Protein C20orf12| Length = 579 Score = 29.3 bits (64), Expect = 5.9 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 344 GDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGTAYDEMK 472 GDGG GS++ +++ Y+Q + D+ E + I++ K + E K Sbjct: 385 GDGGLCGSRSSWVSDYSQSTSDT-IEKIKRIKNFKTKTFQEKK 426
>OAZ1_MOUSE (P54369) Ornithine decarboxylase antizyme (ODC-Az)| Length = 226 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Frame = -2 Query: 485 RSAVASSHHTLSPSTSESRGGSQYQSHHCLVYICSDNG---SWTHRVPHHQLLI 333 RSA + T+ + SRGG +S + CS+ G W VPH L I Sbjct: 23 RSATLHASRTMPLLSQHSRGGCSSESSRVALNCCSNLGPGPRWCSDVPHPPLKI 76
>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of| polyhomeotic 3) (Early development regulatory protein 3) Length = 983 Score = 28.9 bits (63), Expect = 7.7 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Frame = -2 Query: 473 ASSHHTLSPSTSESRGGSQYQSHHCLVYICSDNGSWTHRVPHHQLLISRYHS----LVLT 306 +S H ++P++ S Q H + + S +V HHQL++ + + L Sbjct: 286 SSIHQLIAPASY-----SPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQ 340 Query: 305 RSRPHPPQS-HCLPVPKNETP 246 S PP S HC+P+ + P Sbjct: 341 NSTQDPPPSQHCIPLQNHGLP 361 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,118,783 Number of Sequences: 219361 Number of extensions: 1115362 Number of successful extensions: 4826 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3709 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4816 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
