ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl30g07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2274 Score = 71.9 bits (36), Expect = 6e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 72 accatcacagccgcgtcgtcggcgccgctcccactgctcgcgct 115 ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 49 accatcacatccgcgtcgtcggcgccgctcccgctgctcgcgct 92
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 71.9 bits (36), Expect = 6e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 72 accatcacagccgcgtcgtcggcgccgctcccactgctcgcgct 115 ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 2764792 accatcacatccgcgtcgtcggcgccgctcccgctgctcgcgct 2764835
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 71.9 bits (36), Expect = 6e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 72 accatcacagccgcgtcgtcggcgccgctcccactgctcgcgct 115 ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 27941 accatcacatccgcgtcgtcggcgccgctcccgctgctcgcgct 27984
>ref|XM_472838.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2622 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 gtcctccctgaacgacccggccgg 151 ||||||||||||||||||| |||| Sbjct: 144 gtcctccctgaacgacccgtccgg 167
>ref|XM_363909.1| Magnaporthe grisea 70-15 hypothetical protein (MG01835.4) partial mRNA Length = 4137 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gctcgcgcttctctctctca 126 |||||||||||||||||||| Sbjct: 2266 gctcgcgcttctctctctca 2247
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ccgcgtcgtcggcgccgctcccac 105 |||| ||||||||||||||||||| Sbjct: 65221 ccgcatcgtcggcgccgctcccac 65198
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 gtcctccctgaacgacccggccgg 151 ||||||||||||||||||| |||| Sbjct: 44889 gtcctccctgaacgacccgtccgg 44912
>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence Length = 80723 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 cttctctctctcaagtcctccctg 137 ||||||||||||| |||||||||| Sbjct: 72973 cttctctctctcaggtcctccctg 72996
>ref|NM_133104.2| Drosophila melanogaster CG7282-RA (CG7282), mRNA Length = 5857 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggcgccgctcccactgctc 110 |||||||||||||||||||| Sbjct: 4443 cggcgccgctcccactgctc 4424
>gb|AY058569.1| Drosophila melanogaster LD25641 full length cDNA Length = 4905 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggcgccgctcccactgctc 110 |||||||||||||||||||| Sbjct: 3464 cggcgccgctcccactgctc 3445
>gb|AC018490.6| Drosophila melanogaster, chromosome X, region 17E-17F, BAC clone BACR25O02, complete sequence Length = 165098 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggcgccgctcccactgctc 110 |||||||||||||||||||| Sbjct: 61080 cggcgccgctcccactgctc 61061
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ccgcgtcgtcggcgccgctcccac 105 |||| ||||||||||||||||||| Sbjct: 29928469 ccgcatcgtcggcgccgctcccac 29928446 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 gtcctccctgaacgacccggccgg 151 ||||||||||||||||||| |||| Sbjct: 23602208 gtcctccctgaacgacccgtccgg 23602231
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gctcgcgcttctctctctca 126 |||||||||||||||||||| Sbjct: 9411924 gctcgcgcttctctctctca 9411943 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tgctcgcgcttctctctctc 125 |||||||||||||||||||| Sbjct: 7502434 tgctcgcgcttctctctctc 7502415
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ggccggcccgctgagcccat 165 |||||||||||||||||||| Sbjct: 22138598 ggccggcccgctgagcccat 22138579
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ggccggcccgctgagcccat 165 |||||||||||||||||||| Sbjct: 92254 ggccggcccgctgagcccat 92235
>dbj|BS000122.1| Pan troglodytes chromosome 22 clone:PTB-105K10, map 22, complete sequences Length = 82010 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ttgtgctcccgctcctcacc 74 |||||||||||||||||||| Sbjct: 14249 ttgtgctcccgctcctcacc 14268
>dbj|BS000153.1| Pan troglodytes chromosome 22 clone:RP43-069E18, map 22, complete sequences Length = 194937 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ttgtgctcccgctcctcacc 74 |||||||||||||||||||| Sbjct: 7568 ttgtgctcccgctcctcacc 7587
>gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 of 74 of the complete sequence Length = 297236 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggcgccgctcccactgctc 110 |||||||||||||||||||| Sbjct: 96307 cggcgccgctcccactgctc 96288
>dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-50B3, complete sequence Length = 157702 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 catggcctcctgcttgtgct 61 |||||||||||||||||||| Sbjct: 133213 catggcctcctgcttgtgct 133194
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gctcgcgcttctctctctca 126 |||||||||||||||||||| Sbjct: 9411809 gctcgcgcttctctctctca 9411828 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tgctcgcgcttctctctctc 125 |||||||||||||||||||| Sbjct: 7502313 tgctcgcgcttctctctctc 7502294
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 190718 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gctcgcgcttctctctctca 126 |||||||||||||||||||| Sbjct: 27131 gctcgcgcttctctctctca 27112
>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 98782 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tgctcgcgcttctctctctc 125 |||||||||||||||||||| Sbjct: 92110 tgctcgcgcttctctctctc 92091
>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence Length = 206353 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 cttctctctctcaagtcctccctg 137 |||||||||||| ||||||||||| Sbjct: 127793 cttctctctctctagtcctccctg 127816
>ref|NM_105357.1| Arabidopsis thaliana unknown protein AT1G66860 mRNA, complete cds Length = 1499 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 tctctctcaagtcctccct 136 ||||||||||||||||||| Sbjct: 76 tctctctcaagtcctccct 94
>gb|AC153558.7| Mus musculus 10 BAC RP23-367D2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207823 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ggtccccttccatggcctc 50 ||||||||||||||||||| Sbjct: 63694 ggtccccttccatggcctc 63676
>gb|AY489353.1| Strobilanthes filiformis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 673 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cgtcgtcggcgccgctccc 103 ||||||||||||||||||| Sbjct: 106 cgtcgtcggcgccgctccc 124
>gb|AY489347.1| Strobilanthes lamiifolia internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 590 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cgtcgtcggcgccgctccc 103 ||||||||||||||||||| Sbjct: 107 cgtcgtcggcgccgctccc 125
>gb|AY489346.1| Strobilanthes pluriformis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 649 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cgtcgtcggcgccgctccc 103 ||||||||||||||||||| Sbjct: 82 cgtcgtcggcgccgctccc 100
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 cagccgcgtcgtcggcgcc 97 ||||||||||||||||||| Sbjct: 5575834 cagccgcgtcgtcggcgcc 5575852
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome Length = 235645 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 233174 gccgctcccactgctcgcg 233192 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 197560 gccgctcccactgctcgcg 197542
>emb|AM056014.1| Macaca mulatta partial IGLV1 pseudogene, exons 1-2, isolate IGLV1ps1 Length = 435 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 caggtccccttccatggcc 48 ||||||||||||||||||| Sbjct: 55 caggtccccttccatggcc 37
>emb|CR396582.13| Zebrafish DNA sequence from clone DKEY-283B1 in linkage group 3, complete sequence Length = 154857 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 ttctctctctcaagtcctc 133 ||||||||||||||||||| Sbjct: 3137 ttctctctctcaagtcctc 3155
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence Length = 233739 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 224242 gccgctcccactgctcgcg 224224 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 28828 gccgctcccactgctcgcg 28846
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence Length = 229209 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 30939 gccgctcccactgctcgcg 30957
>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence Length = 234881 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 232824 gccgctcccactgctcgcg 232806 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 32463 gccgctcccactgctcgcg 32481
>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence Length = 226889 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 225204 gccgctcccactgctcgcg 225186 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 26131 gccgctcccactgctcgcg 26149
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence Length = 229700 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 30919 gccgctcccactgctcgcg 30937
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence Length = 229483 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 228836 gccgctcccactgctcgcg 228818 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 28965 gccgctcccactgctcgcg 28983
>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome Length = 231236 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 229634 gccgctcccactgctcgcg 229652 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 193809 gccgctcccactgctcgcg 193791
>emb|Z81042.1|CEC27H6 Caenorhabditis elegans Cosmid C27H6, complete sequence Length = 24775 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 gcgtcgtcggcgccgctcc 102 ||||||||||||||||||| Sbjct: 2088 gcgtcgtcggcgccgctcc 2070
>gb|BC041272.1| Xenopus laevis hypothetical protein MGC52848, mRNA (cDNA clone MGC:52848 IMAGE:4885399), complete cds Length = 1718 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 ctcctgcttgtgctcccgctcct 70 ||||||||||||||||| ||||| Sbjct: 636 ctcctgcttgtgctcccactcct 614
>gb|AF531420.1| Human papillomavirus type 92, complete genome Length = 7461 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 ctcctgcttgtgctcccgctcct 70 ||||||||| ||||||||||||| Sbjct: 3522 ctcctgcttctgctcccgctcct 3500
>emb|AL691522.4| Human DNA sequence from clone RP11-16I11 on chromosome 1, complete sequence Length = 56703 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gcacaggtccccttccatg 45 ||||||||||||||||||| Sbjct: 39846 gcacaggtccccttccatg 39864
>emb|AL445470.5| Human DNA sequence from clone RP11-421L10 on chromosome 1 Contains a novel gene, complete sequence Length = 86332 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ccatggcctcctgcttgtg 59 ||||||||||||||||||| Sbjct: 45198 ccatggcctcctgcttgtg 45180
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 cacagccgcgtcgtcggcg 95 ||||||||||||||||||| Sbjct: 4408944 cacagccgcgtcgtcggcg 4408962
>emb|AL158198.14| Human DNA sequence from clone RP11-239H6 on chromosome 6 Contains the 5' end of the gene for a novel protein, a novel gene, a pseudogene similar to tropomysin and a CpG island, complete sequence Length = 173456 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 ctgctcgcgcttctctctc 123 ||||||||||||||||||| Sbjct: 169068 ctgctcgcgcttctctctc 169050
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 agccgcgtcgtcggcgccg 98 ||||||||||||||||||| Sbjct: 706312 agccgcgtcgtcggcgccg 706330
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 gccgcgtcgtcggcgccgc 99 ||||||||||||||||||| Sbjct: 131451 gccgcgtcgtcggcgccgc 131433
>ref|XM_966429.1| PREDICTED: Tribolium castaneum similar to Probable DNA mismatch repair protein MSH6 (LOC660174), mRNA Length = 3240 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 gctcccactgctcgcgctt 116 ||||||||||||||||||| Sbjct: 2356 gctcccactgctcgcgctt 2338
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome Length = 229354 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 226897 gccgctcccactgctcgcg 226915 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 191346 gccgctcccactgctcgcg 191328
>emb|X04650.1|HEHCMVU Human cytomegalovirus (HCMV) short unique region, short repeats, and part of long repeat Length = 43275 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 41403 gccgctcccactgctcgcg 41421 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccgctcccactgctcgcg 113 ||||||||||||||||||| Sbjct: 5852 gccgctcccactgctcgcg 5834
>gb|AE005922.1| Caulobacter crescentus CB15 section 248 of 359 of the complete genome Length = 10487 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 gccgcgtcgtcggcgccgc 99 ||||||||||||||||||| Sbjct: 9925 gccgcgtcgtcggcgccgc 9907
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 38.2 bits (19), Expect = 8.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 2 ctactggaacacccctaccatggccgc 28 ||||||| ||||||| ||||||||||| Sbjct: 3399423 ctactggcacacccccaccatggccgc 3399397
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 81 gccgcgtcgtcggcgccgctccc 103 |||||||| |||||||||||||| Sbjct: 3597648 gccgcgtcctcggcgccgctccc 3597670
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 tcgtcggcgccgctcccac 105 ||||||||||||||||||| Sbjct: 10551354 tcgtcggcgccgctcccac 10551336
>gb|AC013288.7|AC013288 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence Length = 96899 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 tctctctcaagtcctccct 136 ||||||||||||||||||| Sbjct: 14627 tctctctcaagtcctccct 14609
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 137 gaacgacccggccggcccg 155 ||||||||||||||||||| Sbjct: 1288827 gaacgacccggccggcccg 1288845
>gb|AY088939.1| Arabidopsis thaliana clone 100969 mRNA, complete sequence Length = 1497 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 tctctctcaagtcctccct 136 ||||||||||||||||||| Sbjct: 76 tctctctcaagtcctccct 94
>gb|AC021636.16| Homo sapiens chromosome 8, clone RP11-637F16, complete sequence Length = 148687 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 ccttccatggcctcctgct 55 ||||||||||||||||||| Sbjct: 76073 ccttccatggcctcctgct 76055
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0057I13 Length = 156330 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 tcgtcggcgccgctcccac 105 ||||||||||||||||||| Sbjct: 3666 tcgtcggcgccgctcccac 3648
>dbj|AP005678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1116_F08 Length = 133805 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 tcgtcggcgccgctcccac 105 ||||||||||||||||||| Sbjct: 118959 tcgtcggcgccgctcccac 118941
>gb|AC116769.11| Mus musculus chromosome 15, clone RP23-415L16, complete sequence Length = 201535 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 tctcaagtcctccctgaac 140 ||||||||||||||||||| Sbjct: 110422 tctcaagtcctccctgaac 110404
>gb|AE005136.1| Halobacterium sp. NRC-1 section 167 of 170 of the complete genome Length = 10393 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ccgcgtcgtcggcgccgct 100 ||||||||||||||||||| Sbjct: 8417 ccgcgtcgtcggcgccgct 8399
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 92 ggcgccgctcccactgctcgcgc 114 ||||| ||||||||||||||||| Sbjct: 4033317 ggcgctgctcccactgctcgcgc 4033339
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 gcgccgctcccactgctcg 111 ||||||||||||||||||| Sbjct: 2320930 gcgccgctcccactgctcg 2320912
>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105 Length = 340000 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tgtgctcccgctcctcacc 74 ||||||||||||||||||| Sbjct: 275233 tgtgctcccgctcctcacc 275251
>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete sequences Length = 177933 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gaacacccctaccatggcc 26 ||||||||||||||||||| Sbjct: 140654 gaacacccctaccatggcc 140672
>gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228734 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ggtccccttccatggcctc 50 ||||||||||||||||||| Sbjct: 212341 ggtccccttccatggcctc 212323
>gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complete sequence Length = 156314 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 ctctctctcaagtcctccc 135 ||||||||||||||||||| Sbjct: 97048 ctctctctcaagtcctccc 97066
>gb|AC124180.5| Mus musculus BAC clone RP23-200I16 from 16, complete sequence Length = 199422 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 cttctctctctcaagtcct 132 ||||||||||||||||||| Sbjct: 132578 cttctctctctcaagtcct 132596
>gb|BC108795.1| Xenopus laevis cDNA clone MGC:132143 IMAGE:6958229, complete cds Length = 1713 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 ctcctgcttgtgctcccgctcct 70 ||||||||||||||||| ||||| Sbjct: 617 ctcctgcttgtgctcccactcct 595
>emb|AJ413951.1|MMU413951 Mus musculus SLC2A8 gene for glucose transporter 8 Length = 9582 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 cttccatggcctcctgctt 56 ||||||||||||||||||| Sbjct: 1721 cttccatggcctcctgctt 1739
>dbj|AP000153.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 5/16, complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tgtgctcccgctcctcacc 74 ||||||||||||||||||| Sbjct: 44650 tgtgctcccgctcctcacc 44668
>dbj|AP000011.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 4/13 Length = 100000 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tgtgctcccgctcctcacc 74 ||||||||||||||||||| Sbjct: 92305 tgtgctcccgctcctcacc 92323
>dbj|AP001437.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T596, LB7T-ERG region, complete sequence Length = 92654 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tgtgctcccgctcctcacc 74 ||||||||||||||||||| Sbjct: 74375 tgtgctcccgctcctcacc 74393
>dbj|AB070934.1| Streptomyces avermitilis carotenoid biosynthetic gene cluster Length = 14304 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 137 gaacgacccggccggcccg 155 ||||||||||||||||||| Sbjct: 4762 gaacgacccggccggcccg 4780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,669,720 Number of Sequences: 3902068 Number of extensions: 1669720 Number of successful extensions: 109019 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107604 Number of HSP's gapped (non-prelim): 1415 length of query: 167 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 145 effective length of database: 17,147,199,772 effective search space: 2486343966940 effective search space used: 2486343966940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
