ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30g01 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 96.3 bits (238), Expect = 4e-20 Identities = 43/58 (74%), Positives = 51/58 (87%) Frame = +3 Query: 315 EHAYSNILTSLPKPGGGEYGKFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQLPR 488 E+ + LTSLPKPGGGE+GK+YSLP+LNDPR D+LPYSIRILLESAIRNCD FQ+ + Sbjct: 4 ENPFKENLTSLPKPGGGEFGKYYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKK 61
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 89.4 bits (220), Expect = 5e-18 Identities = 41/57 (71%), Positives = 49/57 (85%) Frame = +3 Query: 312 TEHAYSNILTSLPKPGGGEYGKFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQL 482 +E+ + +IL +L KP GGE+G +YSLPALNDPR DKLPYSIRILLESAIRNCD FQ+ Sbjct: 3 SENPFRSILKALEKPDGGEFGNYYSLPALNDPRIDKLPYSIRILLESAIRNCDEFQV 59
>IREB2_RAT (Q62751) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 52.4 bits (124), Expect = 7e-07 Identities = 22/43 (51%), Positives = 31/43 (72%) Frame = +3 Query: 360 GGEYGKFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQLPR 488 G KF+++P L + D LPYSIR+LLE+A+RNCDGF + + Sbjct: 19 GSSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKK 61
>IREB2_MOUSE (Q811J3) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 52.4 bits (124), Expect = 7e-07 Identities = 22/43 (51%), Positives = 31/43 (72%) Frame = +3 Query: 360 GGEYGKFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQLPR 488 G KF+++P L + D LPYSIR+LLE+A+RNCDGF + + Sbjct: 19 GNSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKK 61
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +3 Query: 375 KFYSLPALNDPRTDKLPYSIRILLESAIRNCDGF 476 KF++L L D R +LP+SIR+LLE+AIRNCD F Sbjct: 20 KFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEF 53
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 47.0 bits (110), Expect = 3e-05 Identities = 20/34 (58%), Positives = 27/34 (79%) Frame = +3 Query: 375 KFYSLPALNDPRTDKLPYSIRILLESAIRNCDGF 476 KF++L L D R +LP+SIR+LLE+A+RNCD F Sbjct: 20 KFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEF 53
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 47.0 bits (110), Expect = 3e-05 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +3 Query: 375 KFYSLPALNDPRTDKLPYSIRILLESAIRNCDGF 476 KF++L L D R +LP+SIR+LLE+AIRNCD F Sbjct: 20 KFFNLSKLEDVRYARLPFSIRVLLEAAIRNCDEF 53
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 45.8 bits (107), Expect = 6e-05 Identities = 19/34 (55%), Positives = 27/34 (79%) Frame = +3 Query: 375 KFYSLPALNDPRTDKLPYSIRILLESAIRNCDGF 476 +F++L L D R +LP+SIR+LLE+A+RNCD F Sbjct: 20 RFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEF 53
>ACOC_CAEEL (Q23500) Probable aconitate hydratase, cytoplasmic (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 887 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/54 (40%), Positives = 36/54 (66%) Frame = +3 Query: 321 AYSNILTSLPKPGGGEYGKFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQL 482 A++N++ +L G K++ L LND R ++LP SI+ LLE+A+R+CD F + Sbjct: 2 AFNNLIRNLAI--GDNVYKYFDLNGLNDARYNELPISIKYLLEAAVRHCDEFHV 53
>IREB1_RABIT (Q01059) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/34 (55%), Positives = 27/34 (79%) Frame = +3 Query: 375 KFYSLPALNDPRTDKLPYSIRILLESAIRNCDGF 476 KF++L L+ R +LP+SIR+LLE+A+RNCD F Sbjct: 20 KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKF 53
>IREB2_HUMAN (P48200) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 43.9 bits (102), Expect = 2e-04 Identities = 20/38 (52%), Positives = 28/38 (73%) Frame = +3 Query: 375 KFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQLPR 488 KF+ + L + D LPYSIR+LLE+A+RNCDGF + + Sbjct: 24 KFFDVSKLGT-KYDVLPYSIRVLLEAAVRNCDGFLMKK 60
>ACON_BACSU (P09339) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 908 Score = 42.0 bits (97), Expect = 9e-04 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGFQLPR 488 G+ +YSL AL D + KLPYSI++LLES +R DGF + + Sbjct: 22 GKTYHYYSLKALEDSGIGKVSKLPYSIKVLLESVLRQVDGFVIKK 66
>ACON_FRATH (Q2A1K3) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 937 Score = 36.6 bits (83), Expect = 0.038 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +3 Query: 336 LTSLPKPGGGEYGKFYSLPALNDPR---TDKLPYSIRILLESAIRNCDGFQL 482 +T L G+ YSL L+ +LPYSIR+LLE+ +RN DG+++ Sbjct: 7 ITKLQIEDKGKKYSLYSLKKLSQELGKDVTRLPYSIRVLLENQLRNIDGYKV 58
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 35.8 bits (81), Expect = 0.064 Identities = 17/43 (39%), Positives = 28/43 (65%) Frame = +3 Query: 360 GGEYGKFYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQLPR 488 G + + Y L A+ P T+KLPYS+++L E+ +RN DG + + Sbjct: 44 GDKSYQIYRLDAV--PNTEKLPYSLKVLAENLLRNEDGSNITK 84
>ACON_STAAR (Q6GH55) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 34.7 bits (78), Expect = 0.14 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L A+ + + KLPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLKAVEEQGITKVSKLPYSIRVLLESLLRQEDDF 57
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L L + + KLPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLQTLEEKGLAKISKLPYSIRVLLESVLRQEDDF 57
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L L + + KLPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLQTLEEKGLAKISKLPYSIRVLLESVLRQEDDF 57
>ACON_STAAW (P63434) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 32.7 bits (73), Expect = 0.54 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L A+ + + LPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDF 57
>ACON_STAAS (Q6G9K9) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 32.7 bits (73), Expect = 0.54 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L A+ + + LPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDF 57
>ACON_STAAN (P99148) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 32.7 bits (73), Expect = 0.54 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L A+ + + LPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDF 57
>ACON_STAAM (P63433) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 32.7 bits (73), Expect = 0.54 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L A+ + + LPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDF 57
>ACON_STAAC (Q5HG69) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 32.7 bits (73), Expect = 0.54 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 363 GEYGKFYSLPALNDP---RTDKLPYSIRILLESAIRNCDGF 476 G+ +Y L A+ + + LPYSIR+LLES +R D F Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDF 57
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = +3 Query: 378 FYSLPALND---PRTDKLPYSIRILLESAIRNCDG 473 +YSLP KLPYS+++LLE+ +RN DG Sbjct: 22 YYSLPTAEKNGLKGISKLPYSMKVLLENLLRNEDG 56
>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)| Length = 936 Score = 32.0 bits (71), Expect = 0.93 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 378 FYSLPALNDPRTDKLPYSIRILLESAIRNCDGFQLPR 488 +++L A+ P +KLPYS+++L E+ +RN DG + R Sbjct: 23 YFALDAV--PGMEKLPYSLKVLGENLLRNEDGKNITR 57
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = +3 Query: 378 FYSLPALNDPRTDKLPYSIRILLESAIRNCDG 473 +Y+L A+ P +KLPYS+++L E+ +R DG Sbjct: 23 YYALSAV--PGMEKLPYSLKVLGENLLRTEDG 52
>UBP30_HUMAN (Q70CQ3) Ubiquitin carboxyl-terminal hydrolase 30 (EC 3.1.2.15)| (Ubiquitin thioesterase 30) (Ubiquitin-specific-processing protease 30) (Deubiquitinating enzyme 30) Length = 517 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +1 Query: 349 LSPGVVNMGNSTAFLH*MIQGPISCP 426 L PG+VN+GN T F++ ++QG +CP Sbjct: 66 LVPGLVNLGN-TCFMNSLLQGLSACP 90
>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 888 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 402 DPRTDKLPYSIRILLESAIRNCD 470 D D LPY+I+ILLES +R D Sbjct: 28 DIELDSLPYTIKILLESLLRKHD 50
>HYIN1_BRAJA (P59385) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 524 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 423 AAYRSLDHLVQEGCRISHIHHPRA*GGWSKYC 328 A R+ DHL + G R+S + P G W +C Sbjct: 334 ALRRAADHLERSGYRVSEVEVPDINGVWQTWC 365 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,145,530 Number of Sequences: 219361 Number of extensions: 760434 Number of successful extensions: 1914 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1870 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1914 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
