ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30f11 |
|---|---|
| Clone Library Name | barley_pub |
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 167 bits (424), Expect = 7e-42 Identities = 82/115 (71%), Positives = 97/115 (84%) Frame = +2 Query: 68 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 247 +GGI+ +TG + + LKG+VVLMRKN LD NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 248 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 D NNG RGKVGAEA+LEQW L ++LP +TTGE++F VTFDW VDKLGVPGAIIVK Sbjct: 62 DPNNGNRGKVGAEASLEQW-LTSSLPSLTTGESRFGVTFDWDVDKLGVPGAIIVK 115
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 167 bits (422), Expect = 1e-41 Identities = 79/114 (69%), Positives = 96/114 (84%) Frame = +2 Query: 68 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 247 +GG++ LTG + A LKG+VVLMRKN LD NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 248 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 409 D +NGGRGKVGAEA LEQW+ T+LP +TTGE+KF +TFDW V+KLGVPGAI+V Sbjct: 63 DQDNGGRGKVGAEAELEQWV--TSLPSLTTGESKFGLTFDWEVEKLGVPGAIVV 114
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 164 bits (416), Expect = 6e-41 Identities = 80/115 (69%), Positives = 98/115 (85%) Frame = +2 Query: 68 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 247 +GGI+ LTG + A LKGS+VLMRKNALD NDFGATV+DG++E LGRGVTCQL+SS+ V Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLV 60 Query: 248 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 D NNG RG+VG EA+LEQWL T+LP +TTGE+KF VTF+W V+K+G+PGAIIVK Sbjct: 61 DPNNGNRGRVGTEASLEQWL--TSLPSLTTGESKFGVTFEWEVEKMGIPGAIIVK 113
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 115 bits (287), Expect = 5e-26 Identities = 60/115 (52%), Positives = 79/115 (68%) Frame = +2 Query: 68 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 247 +GG+ LTG G +KG VLM + LD DF A+++D V E+ G +TCQL+S+T Sbjct: 2 LGGLKDKLTGK-NGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVA 60 Query: 248 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 D NN GRG VG+EANLEQ L T+LP ++ GE+K V F+W +DK GVPGAII+K Sbjct: 61 DQNNEGRGIVGSEANLEQGL--TDLPSVSQGESKLTVRFNWEMDKHGVPGAIIIK 113
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 102 bits (254), Expect = 3e-22 Identities = 58/116 (50%), Positives = 78/116 (67%), Gaps = 1/116 (0%) Frame = +2 Query: 68 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLIS-STN 244 +GGIV + G +KG V+LM+KN LDF + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 245 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 D G GK+ A LE WL T++ IT GE+ F+VTFDW D+ GVPGA I+K Sbjct: 63 YD---GLEGKLSNPAYLESWL--TDITPITAGESTFSVTFDWDRDEFGVPGAFIIK 113
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 97.4 bits (241), Expect = 1e-20 Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Frame = +2 Query: 89 LTGG---LRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 259 LTGG +KG+VVLM+KN LDFNDF A+ +D + E LG +T +L+SS D N Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSEN 68 Query: 260 GGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 G +GK+G A+LE W+ T + +T GE+ F VTFD+ D G PGA +++ Sbjct: 69 GSKGKLGKAAHLEDWI--TTITSLTAGESAFKVTFDYETD-FGYPGAFLIR 116
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 92.0 bits (227), Expect = 5e-19 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 5/117 (4%) Frame = +2 Query: 77 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 241 ++ L GGL G H +KG+VV+M+KNALDF D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 242 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 D NG +GK A LE +LL L + GE F VTFDW+ ++ GVPGA ++K Sbjct: 61 QSDPANGLQGKHSNPAYLENFLL--TLTPLAAGETAFGVTFDWN-EEFGVPGAFVIK 114
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 83.6 bits (205), Expect = 2e-16 Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Frame = +2 Query: 77 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 241 ++ +T GL G H +KG+VV+M KN LDF D ++ + ++LG+ V+ QLISS Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSV 60 Query: 242 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 D NG +GK A LE L T P E F VTFDW+ ++ GVPGA I+K Sbjct: 61 QGDPTNGLQGKHSNPAYLENSLF-TLTPLTAGSETAFGVTFDWN-EEFGVPGAFIIK 115
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 80.1 bits (196), Expect = 2e-15 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Frame = +2 Query: 68 VGGIVSDLTGGLRGA----HLKGSVVLMRKNALDFNDFGATVMDGVTELLGR--GVTCQL 229 V G LTG + A ++G+ VL++K+ L DF A+++DGV +LG GV +L Sbjct: 3 VQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRL 62 Query: 230 ISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 409 +S+T D +NGGRGK+G A+LE+ L + GE+ F V F+W + G+PGA++V Sbjct: 63 VSATARDPSNGGRGKLGKPAHLEE--LVVTMKSTAAGESVFRVAFEWD-ESQGIPGAVVV 119
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 78.2 bits (191), Expect = 7e-15 Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 19/128 (14%) Frame = +2 Query: 86 DLTGGLRGAH-LKGSVVLMRKNALDFN--------------DFGATV----MDGVTELLG 208 ++TG L H ++G+VVLMRKN LDFN D G + +DG+T LG Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLG 63 Query: 209 RGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLG 388 R V+ QLIS+T D N G+GKVG + LE L +LP + GE+ F + F+W ++G Sbjct: 64 RSVSLQLISATKSDAN--GKGKVGKDTFLEGVL--ASLPTLGAGESAFNIHFEWD-HEMG 118 Query: 389 VPGAIIVK 412 +PGA +K Sbjct: 119 IPGAFYIK 126
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 75.9 bits (185), Expect = 3e-14 Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 19/137 (13%) Frame = +2 Query: 59 MFGVGGIVSDLTGGLRGAH-LKGSVVLMRKNALDFNDFG------------------ATV 181 MF V G+ L G G H +KG+VVLMRKN LDFN + Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGST 58 Query: 182 MDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVT 361 +D +T LGR V QLIS+T N G+GKVG + LE ++ +LP + GE+ F + Sbjct: 59 LDNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLEGIIV--SLPTLGAGESAFNIQ 114 Query: 362 FDWSVDKLGVPGAIIVK 412 F+W + +G+PGA +K Sbjct: 115 FEWD-ESMGIPGAFYIK 130
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 74.7 bits (182), Expect = 8e-14 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 14/124 (11%) Frame = +2 Query: 83 SDLTGGL-RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVT 220 S +TG L RG +KG+VVLMRKN LD N D + +D +T LGR V+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVS 62 Query: 221 CQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGA 400 QLIS+T D G+GK+G LE + ++LP + G++ F + F+W D +G+PGA Sbjct: 63 LQLISATKPDAT--GKGKLGKATFLEG--IISSLPTLGAGQSAFKIHFEWD-DDMGIPGA 117 Query: 401 IIVK 412 +K Sbjct: 118 FYIK 121
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 74.3 bits (181), Expect = 1e-13 Identities = 44/102 (43%), Positives = 63/102 (61%) Frame = +2 Query: 107 GAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAE 286 G +KG+VVLM KN L+ N G+ V D + LGR V+ QLIS+T D + G+GKVG + Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKD 61 Query: 287 ANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 LE + T+LP + GE+ F + F+W +G+PGA +K Sbjct: 62 TFLEG--INTSLPTLGAGESAFNIHFEWD-GSMGIPGAFYIK 100
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 70.9 bits (172), Expect = 1e-12 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 15/123 (12%) Frame = +2 Query: 89 LTGGL--RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVTC 223 + GGL RG +KG+VVLMRKN L N D + +D +T LGR V+ Sbjct: 1 MLGGLLHRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSL 60 Query: 224 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 403 QLIS+T D N G+GK+G LE + T+LP + G++ F + F+W D G+ GA Sbjct: 61 QLISATKADAN--GKGKLGKATFLEG--IITSLPTLGAGQSAFKINFEWD-DGSGILGAF 115 Query: 404 IVK 412 +K Sbjct: 116 YIK 118
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 68.2 bits (165), Expect = 7e-12 Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 22/125 (17%) Frame = +2 Query: 104 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 217 +G +KG+VVLM KN LDFN + V+D T LGR + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 218 TCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPG 397 + QLIS+T D G GKVG E LE+ LPT LP + ++ F++ F+W G+PG Sbjct: 67 SMQLISATQTD--GSGNGKVGKEVYLEKH-LPT-LPTLGARQDAFSIFFEWDA-SFGIPG 121 Query: 398 AIIVK 412 A +K Sbjct: 122 AFYIK 126
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 65.1 bits (157), Expect = 6e-11 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 22/125 (17%) Frame = +2 Query: 104 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 217 RG +KG+VVLM KN DFN+F +T ++DG T + R + Sbjct: 7 RGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNI 66 Query: 218 TCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPG 397 QLIS+T D G GKVG + LE+ L +LP + ++ F V F+W + G+P Sbjct: 67 AIQLISATKTD--GLGNGKVGKQTFLEKHL--PSLPNLGDRQDAFNVYFEWD-ENFGIPE 121 Query: 398 AIIVK 412 A +K Sbjct: 122 AFYIK 126
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 64.7 bits (156), Expect = 8e-11 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 20/123 (16%) Frame = +2 Query: 104 RGAHLKGSVVLMRKNALDFN--------------------DFGATVMDGVTELLGRGVTC 223 RG LKG+V+LM+KN LD N +++D T LGR V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 224 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 403 +LIS+T D + G+GKV EA LE L T++P + ++ F+V F+W +G PGA Sbjct: 68 RLISATVADAS--GKGKVSKEAFLEGLL--TSIPTLGDKQSAFSVHFEWD-SNMGTPGAF 122 Query: 404 IVK 412 ++ Sbjct: 123 YIE 125
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 62.8 bits (151), Expect = 3e-10 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%) Frame = +2 Query: 98 GLRGAHLKGSVVLMRKNALDFND-------------FGATVMDGVTELLGRGVTCQLISS 238 G +G +KG++V+M+KN LD N F + +D +T ++ QLIS+ Sbjct: 5 GQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISA 63 Query: 239 TNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVK 412 T D GG+GK+G NL + LP + GE + V F+W D G+PGA +K Sbjct: 64 TKAD---GGKGKIGKSTNLRGKI---TLPTLGAGEQAYDVNFEWDSD-FGIPGAFYIK 114
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 35.4 bits (80), Expect = 0.052 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = -1 Query: 267 RPPLLWSTLVELMSWQVTPRPRSSVT-----PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 103 R P L++ L S PRPRS+ PS AP + + R+ PL W P+ Sbjct: 228 RSPDLFTPLSRPPSPLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQ 287 Query: 102 RPPVRSLTMPPTP 64 R ++L+ PPTP Sbjct: 288 R---QTLSRPPTP 297
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 34.7 bits (78), Expect = 0.089 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -1 Query: 312 GRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMR 133 G+ + R SAP+ + + + ++++S RS +PS+ +SLKS R Sbjct: 374 GKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGR 433 Query: 132 TTEPLRWAPR-RPPVR 88 T +P R+APR PPVR Sbjct: 434 TFDP-RFAPRGSPPVR 448
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 31.6 bits (70), Expect = 0.76 Identities = 38/114 (33%), Positives = 45/114 (39%) Frame = -1 Query: 387 PSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPR 208 PS STDQ VT S GR S + PT P L ST VTP+ Sbjct: 1375 PSTSTDQP-VTPEPTSQAT-RGRTNRSSVKTPETVVPTAPELQLSTST-----DQAVTPK 1427 Query: 207 PRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNIFARS 46 P S T S T S+ +T P+ AP PP S P TP +R+ Sbjct: 1428 PTSRTTRSRT------NMSSVKNPESTVPI--APELPPSTSTEQPVTPEPTSRA 1473 Score = 30.0 bits (66), Expect = 2.2 Identities = 33/114 (28%), Positives = 44/114 (38%) Frame = -1 Query: 387 PSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPR 208 PS STDQ + + GR ++ S P P P L + VTP+ Sbjct: 1252 PSTSTDQPVTSEPTYQAT--RGR---KNRSSVKTPEPVVPTAPELQPSTST--DQPVTPK 1304 Query: 207 PRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNIFARS 46 P S T S T S+ +T P+ AP PP S P TP +R+ Sbjct: 1305 PTSRTTRSRT------NMSSVKNPESTVPI--APELPPSTSTEQPVTPEPTSRA 1350
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 31.2 bits (69), Expect = 0.99 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = -1 Query: 303 HCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTE 124 H S P+ P P L ST+ + + V ++S TP A +SS + T Sbjct: 128 HTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNSSGVPPTA 187 Query: 123 PLRWAPRRPP 94 P+ AP PP Sbjct: 188 PVTEAPTSPP 197
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 30.8 bits (68), Expect = 1.3 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -1 Query: 219 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNIFARSL 43 V P P S +PS AP L SS + ++ W R PP + +PP P+I + L Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSP---WVQRTPP--PIPIPPPPSIPTQDL 616
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 30.0 bits (66), Expect = 2.2 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = -1 Query: 279 PTFPRP-PLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPR 103 P P+P P ++ + S P P++S P+ T +PK T+P + Sbjct: 84 PATPKPTPPTYTPSPKPKSPVYPPPPKASTPPTYTPSPKP---------PATKPPTYPTP 134 Query: 102 RPPVRSLTMPPTPNIFARS 46 +PP T PPTP ++ S Sbjct: 135 KPPA---TKPPTPPVYTPS 150
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 30.0 bits (66), Expect = 2.2 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = -1 Query: 402 MAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSW 223 +APGTP + ++S++T + HCS + P P + WS L + W Sbjct: 2528 VAPGTPQVQVEESELT--------LEAGHTATLHCSATGNPP----PTIHWSKLRAPLPW 2575 Query: 222 Q 220 Q Sbjct: 2576 Q 2576
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 2.2 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -1 Query: 276 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 103 T P PP M+ +TP P S+ T P+ T +P + ++ T P P Sbjct: 1498 TTPSPP---------MTTPITP-PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI 1547 Query: 102 RPPVRSLTMPPT 67 PP + T+PPT Sbjct: 1548 TPPTSTTTLPPT 1559 Score = 29.6 bits (65), Expect = 2.9 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = -1 Query: 276 TFPRPPLLWSTLVELMSWQVTPRPRSSVT----PSMTVAPKSLKSSAFLRMRTTEPLRWA 109 T P PP + +T + TP P ++ T P+ T +P + TT P Sbjct: 1584 TTPSPPTITTTTPPPTT---TPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTT 1640 Query: 108 PRRPPVRSLTMPPT 67 P PP + T PPT Sbjct: 1641 PSPPPTTTTTPPPT 1654 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -1 Query: 276 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 103 T P PP+ +T + TP P ++ P+ T +P + ++ T P P Sbjct: 1452 TTPSPPISTTTTPPPTT---TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPI 1508 Query: 102 RPPVRSLTMPPT 67 PP + T+PPT Sbjct: 1509 TPPASTTTLPPT 1520
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 134 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 241 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 216 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 127 TP P S +PS+ +L+ S F+RM++T Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKST 270
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 29.6 bits (65), Expect = 2.9 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -3 Query: 181 DGGAEVVEVERVLAHEDDG-----ALEVGAPEAPRQVAH-DAADAKHLRSISG 41 DGGA V+ ER A +D+G E G+PE + H D D KH RS SG Sbjct: 15 DGGATPVQDERDSASDDEGNEREQRSEPGSPERQSEDEHSDIEDNKH-RSDSG 66
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 29.3 bits (64), Expect = 3.7 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = -1 Query: 282 APTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPR 103 AP PP + + V M V +P SSV P+ T +L S P AP+ Sbjct: 1480 APVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPA-TAPSSTLPPSQSSFAHVPSPAPPAPQ 1538 Query: 102 RPPVRSLTMPPTPN 61 P +L+ P N Sbjct: 1539 HPSAAALSSAPADN 1552
>PROML_BRARE (Q9W735) Prominin-like protein (Fragment)| Length = 713 Score = 29.3 bits (64), Expect = 3.7 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +2 Query: 140 RKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTN 319 RKNA F DF T++ T ++ GV C ++ N+ G + L+ +N Sbjct: 144 RKNADCFEDFLTTLLLTTTFIITAGVLCAYAANQNLSSQLKGMRR----------LVKSN 193 Query: 320 LPFITTGENKFAVTFDWSVDKLG 388 L + T N+ D+ + + G Sbjct: 194 LKDLHTFANQTPAQIDYLISRYG 216
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/51 (37%), Positives = 20/51 (39%) Frame = -1 Query: 216 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTP 64 TP P S TPS T P S T P P P S T PP+P Sbjct: 136 TPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSP---TPTPSPTPSPTPPPSP 183 Score = 28.1 bits (61), Expect = 8.3 Identities = 24/73 (32%), Positives = 25/73 (34%) Frame = -1 Query: 279 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 100 P P TL S TP P S TPS T P S T P P Sbjct: 75 PALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTP-TPSP 133 Query: 99 PPVRSLTMPPTPN 61 P S T PTP+ Sbjct: 134 TPTPSPTPSPTPS 146
>PYRH_DEIRA (Q9RU81) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 245 Score = 28.9 bits (63), Expect = 4.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +2 Query: 38 LPRDRAKMFGVGG----IVSDLTGGLRGAHLKGSVVLMRKNALD 157 L + R +FG G +D T LR + VVLM KNA+D Sbjct: 127 LEKGRVVIFGGGNGAPFFTTDTTSTLRALEIGADVVLMAKNAVD 170
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = -3 Query: 181 DGGAEVVEVERVLAHEDDG---ALEVGAPEAPRQVAH-DAADAKH 59 DGGA V+ ER A +D+G E G+PE + H D D KH Sbjct: 13 DGGATPVQDERDSASDDEGNEQRSEPGSPEHQSEDEHSDVEDHKH 57
>Y1216_PYRHO (O58967) Hypothetical ABC transporter permease protein PH1216| Length = 275 Score = 28.9 bits (63), Expect = 4.9 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -1 Query: 258 LLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSA-FLRMRTTEPLRWAPR---RPPV 91 LL+ L+ L +W + P + T + T +L + F+ T +P R A R RP + Sbjct: 10 LLYIVLIFLAAWYLLPIWSAITTSTKTGEQVALTTPVQFVFPPTFDPYREAFRELKRPIL 69 Query: 90 RSLTMPPTPNIFARSLGSVA 31 SL IF+ LGS+A Sbjct: 70 NSLIFTTFATIFSTILGSIA 89
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 28.9 bits (63), Expect = 4.9 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -1 Query: 279 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPL-RWAPR 103 PT + PL E+ TP P S P APK +K+ A L + P +P Sbjct: 1245 PTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPA 1304 Query: 102 RPPVRSLTMPP 70 R P +L PP Sbjct: 1305 RQPPAALAKPP 1315
>PEPP2_HUMAN (Q9BQY4) Paired-like homeobox protein PEPP-2 (Testis homeobox gene| 1) Length = 288 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -1 Query: 414 VLTMMAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFA-SAPTFPRPPL 256 +L MA G P + T +TA LF + + F SH S P FP P L Sbjct: 201 MLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSL 254
>TLP_PRUAV (P50694) Thaumatin-like protein precursor| Length = 245 Score = 28.5 bits (62), Expect = 6.4 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 10/51 (19%) Frame = -1 Query: 405 MMAPGT------PSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 283 M+ PGT P LST S+ + L +PV NGRF R+ CS AS Sbjct: 35 MVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 85
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 28.5 bits (62), Expect = 6.4 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 216 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 127 TP P + +PS+ +L+ S F+RM++T Sbjct: 246 TPEPVETTSPSLLTTDNTLERSFFIRMKST 275
>GLGC_ERWCT (Q6CZK2) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 425 Score = 28.5 bits (62), Expect = 6.4 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Frame = +2 Query: 53 AKMFGVGGIVSDLTGGLRGAHLKGSVVLMRKNALDFN------DFGAT--VMDGVTELLG 208 A+ + + L GG RG LKG L K A+ F DF + + G+ + Sbjct: 13 ARQLPLKSVALILAGG-RGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRI-- 69 Query: 209 RGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFIT 334 GV Q S T V H G + AE N LLP + T Sbjct: 70 -GVITQYQSHTLVQHIQRGWSFLNAEMNEFVDLLPAQQRYST 110
>HUNB_DROIK (O46242) Protein hunchback (Fragments)| Length = 193 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/68 (25%), Positives = 34/68 (50%) Frame = -1 Query: 267 RPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVR 88 RPP L + + +M + P P ++ T + T A S ++A + +++ + L+ P Sbjct: 101 RPPGLPNPMQTIMPANMRPSPTATTTATTTAAAASTTTAATVALQSNDKLQ---ALTPPM 157 Query: 87 SLTMPPTP 64 +T P +P Sbjct: 158 DVTPPKSP 165
>SIPD_SALTY (Q56026) Cell invasion protein sipD (Salmonella invasion protein D)| Length = 343 Score = 28.5 bits (62), Expect = 6.4 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Frame = +2 Query: 224 QLISSTNVDHNNGGRG-KVGAEANLEQWLLPTNLP--FITTGENKFAVTFDWS------- 373 Q+ S+T + G G KV EA QWL NLP + + + + VT D + Sbjct: 207 QINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQ 266 Query: 374 -VDKLGVPG 397 +D LG PG Sbjct: 267 DIDGLGAPG 275
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 28.5 bits (62), Expect = 6.4 Identities = 25/78 (32%), Positives = 32/78 (41%) Frame = -1 Query: 279 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 100 PT P + ST VTP+P S T S T S+ +T P+ AP Sbjct: 1327 PTAPELQISTST-----DQPVTPKPTSRTTRSRT------NMSSVKNPESTVPI--APEL 1373 Query: 99 PPVRSLTMPPTPNIFARS 46 PP S P TP +R+ Sbjct: 1374 PPSTSTEQPVTPEPTSRA 1391
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 6.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 109 APEAPRQVAHDAADAKHLRSISGECG 32 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -1 Query: 213 PRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRS 85 P P SS TP++ V P + ++ L +T+P P+ PV S Sbjct: 1026 PPPASSATPALHVQPLAPAAAPSLLQASTQPEVLLPKPAPVYS 1068
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 28.1 bits (61), Expect = 8.3 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -1 Query: 279 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRR 100 P PRPP+ ++T +S P P VT S+ P S ++ L + L PR Sbjct: 1754 PPLPRPPIAFTTFPLPLS-PPNPPPPQLVTFSL---PISTPPTSSLPLPPPLSLPPPPRP 1809 Query: 99 PPVRSLTMPPTPNI 58 P R PP+ +I Sbjct: 1810 PAPRLFPQPPSTSI 1823
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -1 Query: 237 ELMSWQVTPRPR-SSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRS--LTMPPT 67 E + W + RP+ V PS+ +++ S + P W+P+ P+ +T P Sbjct: 565 EYLEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPEL 624 Query: 66 P 64 P Sbjct: 625 P 625
>PE55_LUCCU (Q95UE8) Peritrophin-55 precursor| Length = 220 Score = 28.1 bits (61), Expect = 8.3 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Frame = -1 Query: 300 CSRFASAPTFPR---------PPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSA 148 C F APT PL+ T + + TP S TP +T AP S + Sbjct: 84 CDNFIPAPTCEYLKQTTDVECVPLVKPTTAAPTTLKTTP---SKTTPIVTTAPPSTPVPS 140 Query: 147 FLRMRTTEPLRWAPRRPPVRSLTMPPTP 64 + +P +PP + T+ P+P Sbjct: 141 TIVTNKPDPTTPKTTKPPKVTTTVNPSP 168
>2A5R_MOUSE (Q9Z176) Protein phosphatase 2A, 59 kDa regulatory subunit B (PP2A| PR59) (PP2A B''-PR59) Length = 491 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 108 PRRPPVRSLTMPPTPNIFARSLGSVAR 28 P RPP+R+L P A++L S+AR Sbjct: 2 PERPPIRALRRDPDDPAVAQALASLAR 28
>TLP2_PRUPE (P83335) Thaumatin-like protein 2 precursor (PpAZ8)| Length = 242 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = -1 Query: 393 GTPSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 283 G P LST S+ + L +PV +GRF R+ CS AS Sbjct: 42 GNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDAS 82
>SYH_BURMA (Q62JW5) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 446 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%) Frame = +2 Query: 293 LEQWLLPTNLPF-----ITTGENKFAVT-FDWSVDKLGVPGAI 403 L+Q L NLPF + G + + +T F+W DKLG G + Sbjct: 246 LQQLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTV 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,992,794 Number of Sequences: 219361 Number of extensions: 812046 Number of successful extensions: 3551 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 3375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3513 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
