Clone Name | bastl30f07 |
---|---|
Clone Library Name | barley_pub |
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 107 tggatatggcacttcagctattgttgcaatggacaagagtgcagctatttcttcagatac 166 ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| | Sbjct: 112757 tggatatggcacttcagctattgttgctatggacaaaactgctgctatttcttcagattc 112698 Query: 167 atcgctgccaacaaaccatcttcgtttatcacagtcaaagacaaccagcagagtttctga 226 ||| | || |||| ||||||||| |||||||||||||| | ||| |||||| Sbjct: 112697 atccttttcatcaaatactcttcgtttgtcacagtcaaagactgttgggagaagttctga 112638 Query: 227 tagaagcctagaaagtgtgctaggttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 112637 aagaagcctagagagtgtgcttaactcaagcaaagaaaaggtttctgccattgaaagttt 112578 Query: 287 gctgaaaggtgccagcatatcagataggcaaaatttctcagttgcacgctcaacaagctt 346 ||||||||||| ||||||||||||||||||||| |||||| | | |||||||| ||||| Sbjct: 112577 gctgaaaggtgtaagcatatcagataggcaaaatatctcagctacccgctcaaccagctt 112518 Query: 347 ggaccttgg 355 ||| ||||| Sbjct: 112517 ggatcttgg 112509 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 354 ggggttgatgctccatcatctcgtgatcctcctgttcctcttgcagcaccagcttcaaat 413 ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 112358 ggggttgatcctccatcgtctcgtgatcctcctgttccgcttgcagcaacagcttcaaat 112299 Query: 414 catct 418 ||||| Sbjct: 112298 catct 112294 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 15 ggtgtgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgt 74 ||||||||||| || |||||||| ||||| || ||||||| |||| |||||||||||||| Sbjct: 112849 ggtgtgcacaagcggtatgcttcaccctctcttcgtgagagggttgtgcagccttctcgt 112790 Query: 75 acttcatctcatgcaagtg 93 ||| ||| |||||||||| Sbjct: 112789 tctttatcacatgcaagtg 112771
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 107 tggatatggcacttcagctattgttgcaatggacaagagtgcagctatttcttcagatac 166 ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| | Sbjct: 55377 tggatatggcacttcagctattgttgctatggacaaaactgctgctatttcttcagattc 55318 Query: 167 atcgctgccaacaaaccatcttcgtttatcacagtcaaagacaaccagcagagtttctga 226 ||| | || |||| ||||||||| |||||||||||||| | ||| |||||| Sbjct: 55317 atccttttcatcaaatactcttcgtttgtcacagtcaaagactgttgggagaagttctga 55258 Query: 227 tagaagcctagaaagtgtgctaggttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 55257 aagaagcctagagagtgtgcttaactcaagcaaagaaaaggtttctgccattgaaagttt 55198 Query: 287 gctgaaaggtgccagcatatcagataggcaaaatttctcagttgcacgctcaacaagctt 346 ||||||||||| ||||||||||||||||||||| |||||| | | |||||||| ||||| Sbjct: 55197 gctgaaaggtgtaagcatatcagataggcaaaatatctcagctacccgctcaaccagctt 55138 Query: 347 ggaccttgg 355 ||| ||||| Sbjct: 55137 ggatcttgg 55129 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 354 ggggttgatgctccatcatctcgtgatcctcctgttcctcttgcagcaccagcttcaaat 413 ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 54978 ggggttgatcctccatcgtctcgtgatcctcctgttccgcttgcagcaacagcttcaaat 54919 Query: 414 catct 418 ||||| Sbjct: 54918 catct 54914 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 15 ggtgtgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgt 74 ||||||||||| || |||||||| ||||| || ||||||| |||| |||||||||||||| Sbjct: 55469 ggtgtgcacaagcggtatgcttcaccctctcttcgtgagagggttgtgcagccttctcgt 55410 Query: 75 acttcatctcatgcaagtg 93 ||| ||| |||||||||| Sbjct: 55409 tctttatcacatgcaagtg 55391
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 107 tggatatggcacttcagctattgttgcaatggacaagagtgcagctatttcttcagatac 166 ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| | Sbjct: 25328818 tggatatggcacttcagctattgttgctatggacaaaactgctgctatttcttcagattc 25328759 Query: 167 atcgctgccaacaaaccatcttcgtttatcacagtcaaagacaaccagcagagtttctga 226 ||| | || |||| ||||||||| |||||||||||||| | ||| |||||| Sbjct: 25328758 atccttttcatcaaatactcttcgtttgtcacagtcaaagactgttgggagaagttctga 25328699 Query: 227 tagaagcctagaaagtgtgctaggttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 25328698 aagaagcctagagagtgtgcttaactcaagcaaagaaaaggtttctgccattgaaagttt 25328639 Query: 287 gctgaaaggtgccagcatatcagataggcaaaatttctcagttgcacgctcaacaagctt 346 ||||||||||| ||||||||||||||||||||| |||||| | | |||||||| ||||| Sbjct: 25328638 gctgaaaggtgtaagcatatcagataggcaaaatatctcagctacccgctcaaccagctt 25328579 Query: 347 ggaccttgg 355 ||| ||||| Sbjct: 25328578 ggatcttgg 25328570 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 354 ggggttgatgctccatcatctcgtgatcctcctgttcctcttgcagcaccagcttcaaat 413 ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 25328419 ggggttgatcctccatcgtctcgtgatcctcctgttccgcttgcagcaacagcttcaaat 25328360 Query: 414 catct 418 ||||| Sbjct: 25328359 catct 25328355 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 15 ggtgtgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgt 74 ||||||||||| || |||||||| ||||| || ||||||| |||| |||||||||||||| Sbjct: 25328910 ggtgtgcacaagcggtatgcttcaccctctcttcgtgagagggttgtgcagccttctcgt 25328851 Query: 75 acttcatctcatgcaagtg 93 ||| ||| |||||||||| Sbjct: 25328850 tctttatcacatgcaagtg 25328832
>dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100C22, full insert sequence Length = 5032 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Plus Query: 107 tggatatggcacttcagctattgttgcaatggacaagagtgcagctatttcttcagatac 166 ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| | Sbjct: 1764 tggatatggcacttcagctattgttgctatggacaaaactgctgctatttcttcagattc 1823 Query: 167 atcgctgccaacaaaccatcttcgtttatcacagtcaaagacaaccagcagagtttctga 226 ||| | || |||| ||||||||| |||||||||||||| | ||| |||||| Sbjct: 1824 atccttttcatcaaatactcttcgtttgtcacagtcaaagactgttgggagaagttctga 1883 Query: 227 tagaagcctagaaagtgtgctaggttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1884 aagaagcctagagagtgtgcttaactcaagcaaagaaaaggtttctgccattgaaagttt 1943 Query: 287 gctgaaaggtgccagcatatcagataggcaaaatttctcagttgcacgctcaacaagctt 346 ||||||||||| ||||||||||||||||||||| |||||| | | |||||||| ||||| Sbjct: 1944 gctgaaaggtgtaagcatatcagataggcaaaatatctcagctacccgctcaaccagctt 2003 Query: 347 ggaccttgg 355 ||| ||||| Sbjct: 2004 ggatcttgg 2012 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 354 ggggttgatgctccatcatctcgtgatcctcctgttcctcttgcagcaccagcttcaaat 413 ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 2163 ggggttgatcctccatcgtctcgtgatcctcctgttccgcttgcagcaacagcttcaaat 2222 Query: 414 catct 418 ||||| Sbjct: 2223 catct 2227 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 15 ggtgtgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgt 74 ||||||||||| || |||||||| ||||| || ||||||| |||| |||||||||||||| Sbjct: 1672 ggtgtgcacaagcggtatgcttcaccctctcttcgtgagagggttgtgcagccttctcgt 1731 Query: 75 acttcatctcatgcaagtg 93 ||| ||| |||||||||| Sbjct: 1732 tctttatcacatgcaagtg 1750
>ref|XM_473109.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4233 Score = 147 bits (74), Expect = 4e-32 Identities = 161/190 (84%) Strand = Plus / Plus Query: 107 tggatatggcacttcagctattgttgcaatggacaagagtgcagctatttcttcagatac 166 ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| | Sbjct: 1614 tggatatggcacttcagctattgttgctatggacaaaactgctgctatttcttcagattc 1673 Query: 167 atcgctgccaacaaaccatcttcgtttatcacagtcaaagacaaccagcagagtttctga 226 ||| | || |||| ||||||||| |||||||||||||| | ||| |||||| Sbjct: 1674 atccttttcatcaaatactcttcgtttgtcacagtcaaagactgttgggagaagttctga 1733 Query: 227 tagaagcctagaaagtgtgctaggttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1734 aagaagcctagagagtgtgcttaactcaagcaaagaaaaggtttctgccattgaaagttt 1793 Query: 287 gctgaaaggt 296 |||||||||| Sbjct: 1794 gctgaaaggt 1803 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 15 ggtgtgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgt 74 ||||||||||| || |||||||| ||||| || ||||||| |||| |||||||||||||| Sbjct: 1522 ggtgtgcacaagcggtatgcttcaccctctcttcgtgagagggttgtgcagccttctcgt 1581 Query: 75 acttcatctcatgcaagtg 93 ||| ||| |||||||||| Sbjct: 1582 tctttatcacatgcaagtg 1600
>ref|XM_466759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3140 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Plus Query: 19 tgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgtactt 78 |||| ||||| ||| ||||||| ||| | |||||||||| | | || | ||||| | ||| Sbjct: 1655 tgcagaaacggtatccttctccatcattgcgtgagaagggtgtccaactttctcatgctt 1714 Query: 79 catctcatgcaagtgccactcacatgcctggatatggcacttcagctattgttgcaatgg 138 ||||||||||||||| || || | | ||||| ||||||||||||||||||| |||| Sbjct: 1715 catctcatgcaagtggtacacatttagccggatacagcacttcagctattgttgcgatgg 1774 Query: 139 acaagagtgcagctatttcttc 160 |||||||||||||||||||||| Sbjct: 1775 acaagagtgcagctatttcttc 1796 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 313 ggcaaaatttctcagttgcacgctcaacaagcttggaccttggggttgatgctccatcat 372 ||||||||||||||| | ||||||||||||||||| ||||| |||||| ||||||| | Sbjct: 1940 ggcaaaatttctcagctatgcgctcaacaagcttggatcttggagttgatcctccatcct 1999 Query: 373 ctcgtgatcctcct 386 |||||||||||||| Sbjct: 2000 ctcgtgatcctcct 2013 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 250 gttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 1883 gttcaagtaaacaaaaggtttctgccattgaaagttt 1919
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Minus Query: 19 tgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgtactt 78 |||| ||||| ||| ||||||| ||| | |||||||||| | | || | ||||| | ||| Sbjct: 24513763 tgcagaaacggtatccttctccatcattgcgtgagaagggtgtccaactttctcatgctt 24513704 Query: 79 catctcatgcaagtgccactcacatgcctggatatggcacttcagctattgttgcaatgg 138 ||||||||||||||| || || | | ||||| ||||||||||||||||||| |||| Sbjct: 24513703 catctcatgcaagtggtacacatttagccggatacagcacttcagctattgttgcgatgg 24513644 Query: 139 acaagagtgcagctatttcttc 160 |||||||||||||||||||||| Sbjct: 24513643 acaagagtgcagctatttcttc 24513622 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 250 gttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 24513535 gttcaagtaaacaaaaggtttctgccattgaaagttt 24513499 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 313 ggcaaaatttctcagttgcacgctcaacaagcttggaccttgg 355 ||||||||||||||| | ||||||||||||||||| ||||| Sbjct: 24513478 ggcaaaatttctcagctatgcgctcaacaagcttggatcttgg 24513436 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 357 gttgatgctccatcatctcgtgatcctcct 386 |||||| ||||||| ||||||||||||||| Sbjct: 24513302 gttgatcctccatcctctcgtgatcctcct 24513273
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Minus Query: 19 tgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgtactt 78 |||| ||||| ||| ||||||| ||| | |||||||||| | | || | ||||| | ||| Sbjct: 27864 tgcagaaacggtatccttctccatcattgcgtgagaagggtgtccaactttctcatgctt 27805 Query: 79 catctcatgcaagtgccactcacatgcctggatatggcacttcagctattgttgcaatgg 138 ||||||||||||||| || || | | ||||| ||||||||||||||||||| |||| Sbjct: 27804 catctcatgcaagtggtacacatttagccggatacagcacttcagctattgttgcgatgg 27745 Query: 139 acaagagtgcagctatttcttc 160 |||||||||||||||||||||| Sbjct: 27744 acaagagtgcagctatttcttc 27723 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 250 gttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 27636 gttcaagtaaacaaaaggtttctgccattgaaagttt 27600 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 313 ggcaaaatttctcagttgcacgctcaacaagcttggaccttgg 355 ||||||||||||||| | ||||||||||||||||| ||||| Sbjct: 27579 ggcaaaatttctcagctatgcgctcaacaagcttggatcttgg 27537 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 357 gttgatgctccatcatctcgtgatcctcct 386 |||||| ||||||| ||||||||||||||| Sbjct: 27403 gttgatcctccatcctctcgtgatcctcct 27374
>dbj|AK120120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025O20, full insert sequence Length = 4796 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Plus Query: 19 tgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgtactt 78 |||| ||||| ||| ||||||| ||| | |||||||||| | | || | ||||| | ||| Sbjct: 1654 tgcagaaacggtatccttctccatcattgcgtgagaagggtgtccaactttctcatgctt 1713 Query: 79 catctcatgcaagtgccactcacatgcctggatatggcacttcagctattgttgcaatgg 138 ||||||||||||||| || || | | ||||| ||||||||||||||||||| |||| Sbjct: 1714 catctcatgcaagtggtacacatttagccggatacagcacttcagctattgttgcgatgg 1773 Query: 139 acaagagtgcagctatttcttc 160 |||||||||||||||||||||| Sbjct: 1774 acaagagtgcagctatttcttc 1795 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%), Gaps = 5/79 (6%) Strand = Plus / Plus Query: 313 ggcaaaatttctcagttgcacgctcaacaagcttggaccttggg-----gttgatgctcc 367 ||||||||||||||| | ||||||||||||||||| |||| | |||||| |||| Sbjct: 1939 ggcaaaatttctcagctatgcgctcaacaagcttggatcttgtgcaggagttgatcctcc 1998 Query: 368 atcatctcgtgatcctcct 386 ||| ||||||||||||||| Sbjct: 1999 atcctctcgtgatcctcct 2017 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 250 gttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 1882 gttcaagtaaacaaaaggtttctgccattgaaagttt 1918
>dbj|AK067382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102B13, full insert sequence Length = 4538 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Plus Query: 19 tgcacaaacgttatgcttctccctcactccgtgagaaggttctgcagccttctcgtactt 78 |||| ||||| ||| ||||||| ||| | |||||||||| | | || | ||||| | ||| Sbjct: 1655 tgcagaaacggtatccttctccatcattgcgtgagaagggtgtccaactttctcatgctt 1714 Query: 79 catctcatgcaagtgccactcacatgcctggatatggcacttcagctattgttgcaatgg 138 ||||||||||||||| || || | | ||||| ||||||||||||||||||| |||| Sbjct: 1715 catctcatgcaagtggtacacatttagccggatacagcacttcagctattgttgcgatgg 1774 Query: 139 acaagagtgcagctatttcttc 160 |||||||||||||||||||||| Sbjct: 1775 acaagagtgcagctatttcttc 1796 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 313 ggcaaaatttctcagttgcacgctcaacaagcttggaccttggggttgatgctccatcat 372 ||||||||||||||| | ||||||||||||||||| ||||| |||||| ||||||| | Sbjct: 1940 ggcaaaatttctcagctatgcgctcaacaagcttggatcttggagttgatcctccatcct 1999 Query: 373 ctcgtgatcctcct 386 |||||||||||||| Sbjct: 2000 ctcgtgatcctcct 2013 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 250 gttcaagcaaagaaaaggtttctgctattgaaagttt 286 ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 1883 gttcaagtaaacaaaaggtttctgccattgaaagttt 1919
>gb|AC008499.8| Homo sapiens chromosome 5 clone CTC-438O3, complete sequence Length = 244525 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 389 tcctcttgcagcaccagcttcaaatcatct 418 |||||| |||||||||||||||||| |||| Sbjct: 235583 tcctctggcagcaccagcttcaaatgatct 235554
>gb|AC016579.6| Homo sapiens chromosome 5 clone CTB-95F1, complete sequence Length = 170334 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 389 tcctcttgcagcaccagcttcaaatcatct 418 |||||| |||||||||||||||||| |||| Sbjct: 121888 tcctctggcagcaccagcttcaaatgatct 121859
>gb|AC008489.7| Homo sapiens chromosome 5 clone CTC-425K20, complete sequence Length = 133658 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 389 tcctcttgcagcaccagcttcaaatcatct 418 |||||| |||||||||||||||||| |||| Sbjct: 48168 tcctctggcagcaccagcttcaaatgatct 48139
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 357 gttgatgctccatcatctcgtgatcctcct 386 |||||| ||||||| ||||||||||||||| Sbjct: 141508 gttgatcctccatcctctcgtgatcctcct 141479
>ref|XM_948494.1| Theileria annulata strain Ankara hypothetical protein (TA09600) partial mRNA Length = 2940 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 catgcctggatatggcacttc 121 ||||||||||||||||||||| Sbjct: 2692 catgcctggatatggcacttc 2712
>gb|DP000038.2| Colobus guereza target 106 genomic scaffold Length = 481828 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 ttcaagcaaagaaaaggtttc 271 ||||||||||||||||||||| Sbjct: 104938 ttcaagcaaagaaaaggtttc 104958
>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3 Contains a gene for a novel protein similar to a glycosyltransferase, the gene for protein translocation complex beta (SEC61B), a novel gene for a protein similar to cytokeratin 8 (KRT8)and a CpG island, complete sequence Length = 197169 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gaaagtttgctgaaaggtgcc 299 ||||||||||||||||||||| Sbjct: 153731 gaaagtttgctgaaaggtgcc 153751
>emb|AL109839.11|HSJ1069P2 Human DNA sequence from clone RP5-1069P2 on chromosome 20 Contains the the 3' end of the C20orf119 gene for chromosome 20 open reading frame 119, the TOMM34 gene for translocase of outer mitochondrial membrane 34, a novel gene, the 5' end of the STK4 gene for serine/threonine kinase 4 and a CpG island, complete sequence Length = 109575 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 ttcaagcaaagaaaaggtttc 271 ||||||||||||||||||||| Sbjct: 89609 ttcaagcaaagaaaaggtttc 89589
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 ttcaagcaaagaaaaggtttc 271 ||||||||||||||||||||| Sbjct: 121624 ttcaagcaaagaaaaggtttc 121644
>gb|AC153645.4| Mus musculus BAC clone RP24-534E8 from chromosome 13, complete sequence Length = 182805 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 258 aaagaaaaggtttctgctattgaaagtt 285 |||||| ||||||||||||||| ||||| Sbjct: 116315 aaagaacaggtttctgctattggaagtt 116342
>gb|AC135667.5| Mus musculus BAC clone RP24-536G18 from chromosome 13, complete sequence Length = 166185 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 258 aaagaaaaggtttctgctattgaaagtt 285 |||||| ||||||||||||||| ||||| Sbjct: 2460 aaagaacaggtttctgctattggaagtt 2487
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tcgtgatcctcctgttcctc 393 |||||||||||||||||||| Sbjct: 1516074 tcgtgatcctcctgttcctc 1516055
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 atcctcctgttcctcttgca 398 |||||||||||||||||||| Sbjct: 3991824 atcctcctgttcctcttgca 3991843
>gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, complete sequence Length = 196776 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ttggggttgatgctccatca 371 |||||||||||||||||||| Sbjct: 2193 ttggggttgatgctccatca 2212
>gb|AC141870.4| Mus musculus BAC clone RP24-359E19 from chromosome 19, complete sequence Length = 153749 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 agaaagtgtgctaggttcaa 255 |||||||||||||||||||| Sbjct: 106924 agaaagtgtgctaggttcaa 106905
>gb|AC069560.26| Mus musculus strain 129/Sv clone ct7-22f10 map 2, complete sequence Length = 118824 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaaggttctgcagccttctc 72 |||||||||||||||||||| Sbjct: 39281 gaaggttctgcagccttctc 39300
>emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chromosome 10 Contains two CpG islands, complete sequence Length = 131112 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 catatcagataggcaaaatt 321 |||||||||||||||||||| Sbjct: 40129 catatcagataggcaaaatt 40148
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 agcttggaccttggggttga 361 |||||||||||||||||||| Sbjct: 53707 agcttggaccttggggttga 53688
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cgctgccaacaaaccatctt 188 |||||||||||||||||||| Sbjct: 536788 cgctgccaacaaaccatctt 536769
>gb|AC004840.4| Homo sapiens PAC clone RP4-607J2 from 7, complete sequence Length = 149397 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 187 ttcgtttatcacagtcaaagacaaccagcaga 218 |||||||||||| ||||||| |||||| |||| Sbjct: 73533 ttcgtttatcactgtcaaagtcaaccaacaga 73564
>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence Length = 177777 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 ccactcacatgcctggatatggca 117 ||||||||| |||||||||||||| Sbjct: 119880 ccactcacaggcctggatatggca 119903
>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence Length = 180486 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 ccactcacatgcctggatatggca 117 ||||||||| |||||||||||||| Sbjct: 149702 ccactcacaggcctggatatggca 149679
>gb|AC007668.7| Drosophila melanogaster, chromosome 3R, region 87C-87C, BAC clone BACR02G11, complete sequence Length = 167239 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 29445 tcacatgcctggatatggca 29426
>gb|AC007594.5| Drosophila melanogaster, chromosome 3R, region 87B-87C, BAC clone BACR28I14, complete sequence Length = 161601 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 136382 tcacatgcctggatatggca 136363
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 atcctcctgttcctcttgca 398 |||||||||||||||||||| Sbjct: 3027080 atcctcctgttcctcttgca 3027099
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 accagcttcaaatcatctat 420 |||||||||||||||||||| Sbjct: 26069274 accagcttcaaatcatctat 26069293
>gb|AC008226.10|AC008226 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone BACR02B19, complete sequence Length = 171286 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 68996 tcacatgcctggatatggca 68977
>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete sequence Length = 178780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 ttggggttgatgctccatca 371 |||||||||||||||||||| Sbjct: 59635 ttggggttgatgctccatca 59616
>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence Length = 167471 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gagtgcagctatttcttcag 162 |||||||||||||||||||| Sbjct: 166370 gagtgcagctatttcttcag 166389
>gb|AC019051.8| Homo sapiens BAC clone RP11-92L24 from 2, complete sequence Length = 137248 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gagtgcagctatttcttcag 162 |||||||||||||||||||| Sbjct: 899 gagtgcagctatttcttcag 918
>emb|BX649317.5| Mouse DNA sequence from clone RP23-415G15 on chromosome 2, complete sequence Length = 199584 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gaaggttctgcagccttctc 72 |||||||||||||||||||| Sbjct: 145578 gaaggttctgcagccttctc 145559
>gb|AE003696.3| Drosophila melanogaster chromosome 3R, section 34 of 118 of the complete sequence Length = 265467 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 65045 tcacatgcctggatatggca 65026
>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete sequence Length = 301379 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 266776 tcacatgcctggatatggca 266757
>gb|AF028006.1|AF028006 Methanosarcina barkeri atp operon: ATP synthase beta subunit (atpD), ATP synthase epsilon subunit (atpC), ATP synthase gene 1 (atpI), ATP synthase a subunit (atpB), ATP synthase c subunit (atpE), ATP synthase b subunit (atpF), ATP synthase alpha subunit (atpA), ATP synthase gamma subunit N-terminus homolog (atpG), and ATP synthase gamma subunit C-terminus homolog (atpJ) genes, complete cds Length = 10527 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 atcctcctgttcctcttgca 398 |||||||||||||||||||| Sbjct: 4402 atcctcctgttcctcttgca 4383
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 accagcttcaaatcatctat 420 |||||||||||||||||||| Sbjct: 25997450 accagcttcaaatcatctat 25997469
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 accagcttcaaatcatctat 420 |||||||||||||||||||| Sbjct: 42397 accagcttcaaatcatctat 42378
>gb|CP000186.1| Drosophila melanogaster genomic scaffold 211000022280663 Length = 77965 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 7919 tcacatgcctggatatggca 7900
>emb|X14037.1|DMDM11 D.melanogaster micropia-Dm11 retrotransposon Length = 5465 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 2171 tcacatgcctggatatggca 2190
>emb|X15066.1|DMMC3DM2 Drosophila retroposon microcopia Dm-2 3'end Length = 5455 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tcacatgcctggatatggca 117 |||||||||||||||||||| Sbjct: 2040 tcacatgcctggatatggca 2059 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,588,038 Number of Sequences: 3902068 Number of extensions: 4588038 Number of successful extensions: 84289 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84029 Number of HSP's gapped (non-prelim): 255 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)