ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SAPS2_MOUSE (Q8R3Q2) SAPS domain family member 2 78 1e-14
2SAPS3_MOUSE (Q922D4) SAPS domain family member 3 76 4e-14
3SAPS3_HUMAN (Q5H9R7) SAPS domain family member 3 (Sporulation-in... 76 4e-14
4SAPS3_CHICK (Q5F471) SAPS domain family member 3 75 1e-13
5SAPS2_HUMAN (O75170) SAPS domain family member 2 74 2e-13
6SAP3B_XENLA (Q6NRF1) SAPS domain family member 3-B 72 6e-13
7SAP3A_XENLA (Q6NRI0) SAPS domain family member 3-A 72 6e-13
8SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1 70 4e-12
9SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1 69 9e-12
10IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2 34 0.25
11SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Tra... 32 0.94
12Y928_TREPA (O83898) Hypothetical protein TP0928 32 1.2
13ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related pro... 32 1.2
14SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein) 31 1.6
15SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Tra... 31 1.6
16YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4 31 1.6
17VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6... 31 2.1
18VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6... 31 2.1
19SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratc... 31 2.1
20SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratc... 31 2.1
21FBRL_GIALA (Q24957) Fibrillarin 30 2.7
22HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-) 30 2.7
23SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains pro... 30 2.7
24CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21)... 30 3.6
25MYOB_DICDI (P34092) Myosin IB heavy chain 30 3.6
26IF2_THEFY (Q47RV1) Translation initiation factor IF-2 30 3.6
27ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arab... 30 4.7
28CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long... 29 6.1
29CI066_HUMAN (Q5T8R8) Protein C9orf66 29 7.9
30SOX12_MOUSE (Q04890) SOX-12 protein 29 7.9
31RP54_XANCV (P77998) RNA polymerase sigma-54 factor 29 7.9
32CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor 29 7.9
33TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (D... 29 7.9
34US02_EHV1B (P28964) Gene 68 protein 29 7.9

>SAPS2_MOUSE (Q8R3Q2) SAPS domain family member 2|
          Length = 923

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 40/104 (38%), Positives = 61/104 (58%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L+  S VD +LDKE+ T         I+QECKA N +L++FL  +  +E+L+ 
Sbjct: 1   MFWKFD-LNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVN 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIXCHLRTLVEDEEXM 499
            + ++ P D E+K  FK+P  ACE+ TC++      L EDE  +
Sbjct: 60  LITQDPPQDMEEKVRFKYPNTACELLTCDVPQISDRLGEDESLL 103



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>SAPS3_MOUSE (Q922D4) SAPS domain family member 3|
          Length = 844

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 37/104 (35%), Positives = 62/104 (59%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIXCHLRTLVEDEEXM 499
           +++EE P D ++K  +K+P I+CE+ T ++      L EDE  +
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLL 103



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>SAPS3_HUMAN (Q5H9R7) SAPS domain family member 3 (Sporulation-induced|
           transcript 4-associated protein SAPL) (Protein
           phosphatase 6 regulatory subunit 3)
          Length = 873

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 37/104 (35%), Positives = 62/104 (59%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIXCHLRTLVEDEEXM 499
           +++EE P D ++K  +K+P I+CE+ T ++      L EDE  +
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLL 103



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>SAPS3_CHICK (Q5F471) SAPS domain family member 3|
          Length = 873

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/104 (34%), Positives = 62/104 (59%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKSECLEDLVS 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIXCHLRTLVEDEEXM 499
           +++EE P D ++K  +K+P I+CE+ T ++      L E+E  +
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQINDRLGEEESLL 103



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>SAPS2_HUMAN (O75170) SAPS domain family member 2|
          Length = 927

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 56/90 (62%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L+  S VD +LDKE+ T         I+QECKA N +L++FL  +  +E+L+ 
Sbjct: 1   MFWKFD-LNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVS 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEI 457
            + ++ P D E+K  FK+P  ACE+ TC++
Sbjct: 60  LITQDPPLDMEEKVRFKYPNTACELLTCDV 89



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>SAP3B_XENLA (Q6NRF1) SAPS domain family member 3-B|
          Length = 850

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 35/101 (34%), Positives = 59/101 (58%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L ++S +DT+L+++  T         I+QECKA N +L+ FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLERDEVTLKELMDEEDILQECKAQNRKLVEFLLKSECLEDLVT 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIXCHLRTLVEDE 490
           ++ EE P D ++K  +K+P ++CE+ T ++      L EDE
Sbjct: 60  FITEEPPQDMDEKIRYKYPNLSCELLTSDVSQINDRLGEDE 100



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>SAP3A_XENLA (Q6NRI0) SAPS domain family member 3-A|
          Length = 852

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 35/104 (33%), Positives = 60/104 (57%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L ++S +DT+L+++  T         I+QECKA N +L+ FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLERDEVTLKELMDEEDILQECKAQNRKLVEFLLKAECLEDLVT 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIXCHLRTLVEDEEXM 499
           ++ EE P D ++K  +K+P ++CE+ T ++      L EDE  +
Sbjct: 60  FITEEPPQDMDEKIRYKYPNLSCELLTSDVSQINDRLGEDESLL 103



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>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 29/90 (32%), Positives = 56/90 (62%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L  +S +DT+L++E+ +         ++QECK +N +L++FL     ++ ++ 
Sbjct: 1   MFWKFD-LHTSSHLDTLLEREDLSLPELLDEEDVLQECKVVNRKLLDFLLQPPHLQAMVA 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEI 457
           +V +E PD  E++  +K+P +ACEI T ++
Sbjct: 60  WVTQEPPDSGEERLRYKYPSVACEILTSDV 89



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>SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1|
          Length = 856

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 29/90 (32%), Positives = 56/90 (62%)
 Frame = +2

Query: 188 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 367
           MFW+   L  +S +DT+L+KE+ +         ++QECK +N +L++FL   + ++ ++ 
Sbjct: 1   MFWKFD-LHTSSHLDTLLEKEDLSLPELLDEEDVLQECKVVNRKLLDFLLQPSHLQAMVA 59

Query: 368 YVVEEVPDDAEKKRSFKFPFIACEIFTCEI 457
           +V +E P   E++  +K+P +ACEI T ++
Sbjct: 60  WVTQEPPASGEERLRYKYPSVACEILTSDV 89



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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -2

Query: 225 GEAAERPVMRQNMVAAAVDLG------FPAPGGASPRPNPRESGRRRPDWATGEGGWIGR 64
           G+ A RP        AA   G       P+PG   PRPNP    +R P      GG  GR
Sbjct: 217 GQGAPRPGATPGPRPAAAQGGPRPGGPRPSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGR 276

Query: 63  --GASGSNWDRGG 31
             GA G+    GG
Sbjct: 277 PGGAPGAGRPGGG 289



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>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
          corepressor Sin3b) (Histone deacetylase complex subunit
          Sin3b)
          Length = 1162

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 90 TGEGGWIGRGASGSNWDRGG*EAHER 13
          +G GG  GRG SG+ W R G   HE+
Sbjct: 11 SGAGGPAGRGLSGARWGRSGSAGHEK 36



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>Y928_TREPA (O83898) Hypothetical protein TP0928|
          Length = 246

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 308 LNTRLINFLRDKAQVEQLLRYVV---EEVPDDAEKKRSFKFP-FIACEIFTCEIXCHLRT 475
           LN+R + F++D A+ E+  RYVV   E  P +   +     P F+ C  F C      RT
Sbjct: 180 LNSRELRFVQDMAKKERSFRYVVLGEERFPAERVSRTGKSMPTFLPCITFPCSPTPRKRT 239



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>ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related protein 71)|
          Length = 335

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
 Frame = -2

Query: 159 PAPGGASPRP----------NPRESGRRRPDWATGEGGW------IGRGASGSN-WDRG- 34
           PAP G SP P          NP  S    P W+     W         G SG+  WD G 
Sbjct: 105 PAPPGTSPSPFVGFEGATGQNPATSAGGVPSWSHPPAAWSTTSWDCSVGPSGATYWDNGL 164

Query: 33  G*EAHERRK 7
           G EAHE  K
Sbjct: 165 GGEAHEDYK 173



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>SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)|
          Length = 315

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -2

Query: 204 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG-SNWDRGG* 28
           +++Q    A  D G P PG     P P E G R P W     G I R  +    W +   
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQ--- 52

Query: 27  EAHERRK 7
             HERRK
Sbjct: 53  --HERRK 57



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>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional|
          corepressor Sin3b) (Histone deacetylase complex subunit
          Sin3b)
          Length = 1098

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 87 GEGGWIGRGASGSNWDRGG*EAHER 13
          G GG  GRG  GS W R G   HE+
Sbjct: 5  GSGGSAGRGFGGSRWGRSGSGGHEK 29



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>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 225 GEAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESG 112
           G +A  P    N ++ +   G PAPG ++  PNP  +G
Sbjct: 31  GSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAG 68



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>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 226
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64



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>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
           (Glycoprotein B)
          Length = 932

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 226
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64



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>SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (mScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 189 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 49
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAASGSAPPPTP------RPELATAAGGYINGDAAVS 109



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>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (hScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 189 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 49
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAAAGSAPPPTP------RPELATAAGGYINGDAAVS 109



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>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -2

Query: 165 GFPAPGGASPRPNPRESGR-------RRPDWATGEGGWIGRGASGSNWDRGG*EAHERR 10
           G   PGG  P  + R+SGR        RPD+  G+GG  G G    +   GG +  +RR
Sbjct: 12  GRDGPGGRGPGNDRRDSGRSFGDRRPERPDFKRGDGG-RGFGDRRGSGPPGGPDRGDRR 69



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>HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 336

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 192 NMVAAAVDLGFPAPGG--ASPRPNPRESGRRRPDWATGE 82
           N +AA  ++     GG  A+PRP PR++G ++P    G+
Sbjct: 268 NRIAALQEMAQQMAGGTQAAPRPTPRQAGEQQPSGPWGQ 306



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>SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains protein 3 (Shank3)|
           (Proline-rich synapse-associated protein 2) (ProSAP2)
           (Fragment)
          Length = 797

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 180 AAVDLGFPAPGGAS--PRPNPRESGRRRP--DWATGEGGWIGRGASGSNWDRGG*EAHER 13
           AA+ +G P PGG S    P+P   G R    D+  G+G  +  G  G   DR      ER
Sbjct: 33  AALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPGLAFGGPGPAKDR---RLEER 89

Query: 12  RK 7
           R+
Sbjct: 90  RR 91



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>CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 435

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 162 FPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG 52
           +P  G   P P  RE   R  +   GEGGW+  G  G
Sbjct: 330 YPIEGRLGPPPWERERAARFTEKRLGEGGWVWIGDDG 366



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>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 150  GGASPRPNPRESGRRRPDWATGEGGWIGRGA 58
            GGA P P P++ G  RP  A  +GG   +GA
Sbjct: 975  GGARPMPQPQQGGGARPMGAPQQGGAPQQGA 1005



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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
 Frame = -2

Query: 138 PRPNPRES------------GRRRPDWATGEGGWIGRGASGSNWDRGG 31
           PRP PR S            G  RP  ++  GG  GRG  G    RGG
Sbjct: 243 PRPGPRPSPMNMPASRPTPPGGARPSTSSRSGGGRGRGGGGGAGPRGG 290



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>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 165 GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG*E 25
           G P+PGG S  P     G   P    G GG   +G  G    + G E
Sbjct: 404 GSPSPGGGSGSPPSTGGGSGSPPSTGGGGGSPSKGGGGGKSGKSGEE 450



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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 165  GFPA-PGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDR 37
            GFP  PGG  P+ +  E+G +      GE G  G   S  N DR
Sbjct: 1901 GFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDR 1944



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>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -2

Query: 219 AAERPVMRQNMV--AAAVDLGFPAPGGASPRPNPR---ESGR-RRPDWATGEGGWIGRGA 58
           AAE      N+V  +A     FP     SPR   R     GR R P W  G GG  GRG 
Sbjct: 165 AAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGP 224

Query: 57  S 55
           S
Sbjct: 225 S 225



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>SOX12_MOUSE (Q04890) SOX-12 protein|
          Length = 314

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 204 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG-SNWDRGG* 28
           +++Q    A  D G P PG     P P   G R P W     G I R  +    W +   
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAAEGAREPGWCKTPSGHIKRPMNAFMVWSQ--- 52

Query: 27  EAHERRK 7
             HERRK
Sbjct: 53  --HERRK 57



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>RP54_XANCV (P77998) RNA polymerase sigma-54 factor|
          Length = 479

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -2

Query: 180 AAVDLGFPAPGGASPRPNPRES---GRRRPDWATGEGGWIGRGASGSNWDRGG*EAHER 13
           AA D+   +   AS     RE      R  DW+  E  W G G+ GS  D    +A ER
Sbjct: 56  AASDIAVDSSPSASTEQPQREEVAPAERDEDWSQDELQWTGSGSGGSFDDDESGDAAER 114



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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 168 LGFPAPGGASPRP-NPRESGRRRPDWATGEGGWIGR-GASG 52
           +GFP P GA+  P  P E G   P  A G  G  G  GA G
Sbjct: 569 MGFPGPKGAAGEPGKPGERGAPGPPGAVGAAGKDGEAGAQG 609



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>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 95  QSGRRRPDSRGFGRGLAPPGAGNPR 169
           + G  R   RG GRG  PPG  NPR
Sbjct: 824 RGGPGRRQGRGRGRGRRPPGKPNPR 848



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>US02_EHV1B (P28964) Gene 68 protein|
          Length = 418

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 210 RPVMRQNMVAAAVDLG----FPAPGGASPRPNPRESGRRRPDWA 91
           RP   + ++ A VD       PAPG   PR  P E G  RP+ A
Sbjct: 210 RPPTVKRVIYAVVDPARLREIPAPGRPLPRRRPSEGGDARPEAA 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,353,035
Number of Sequences: 219361
Number of extensions: 1007291
Number of successful extensions: 3962
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3946
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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