ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30f04 |
|---|---|
| Clone Library Name | barley_pub |
>SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/SNF complex| component SWI3) (Transcription factor TYE2) Length = 825 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +1 Query: 247 KKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 372 K L + WSK++L+ +++G DW KVA V +++ + Sbjct: 518 KILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPE 559
>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein) Length = 1104 Score = 32.0 bits (71), Expect = 0.91 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +1 Query: 220 LYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 372 +Y K + K + G +W++ E A Y DW KV+ V RT D Sbjct: 604 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 654
>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) Length = 1105 Score = 32.0 bits (71), Expect = 0.91 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +1 Query: 220 LYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 372 +Y K + K + G +W++ E A Y DW KV+ V RT D Sbjct: 605 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 655
>SC6A2_MOUSE (O55192) Sodium-dependent noradrenaline transporter (Norepinephrine| transporter) (NET) Length = 617 Score = 32.0 bits (71), Expect = 0.91 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = -1 Query: 236 FIFMYNRCILFWPIFINFGIALVNISHFSCGRHWKSQNC 120 ++ Y I+ W ++ F +N+ +CG W S NC Sbjct: 147 YVGFYYNVIIAWSLYYLFASFTLNLPWTNCGHSWNSPNC 185
>RCOR2_XENLA (Q6NRZ0) REST corepressor 2| Length = 503 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = +1 Query: 160 EMLTSAMPKLMKIGQKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRK 339 + + S++ + ++ G M+ + IK L ++W+ DE A RKYGKD++ Sbjct: 302 KQMNSSLKESLEGGISEMRPPELNIK--------LNARWTTDEQLLAVQAVRKYGKDFQA 353 Query: 340 VAGAVHDRTSDMVEALY 390 ++ + ++T V+ + Sbjct: 354 ISEVLGNKTPSQVKTFF 370
>SC6A2_HUMAN (P23975) Sodium-dependent noradrenaline transporter (Norepinephrine| transporter) (NET) Length = 617 Score = 31.2 bits (69), Expect = 1.6 Identities = 11/39 (28%), Positives = 18/39 (46%) Frame = -1 Query: 236 FIFMYNRCILFWPIFINFGIALVNISHFSCGRHWKSQNC 120 ++ Y I+ W ++ F +N+ CG W S NC Sbjct: 147 YVGFYYNVIIAWSLYYLFSSFTLNLPWTDCGHTWNSPNC 185
>MIER1_HUMAN (Q8N108) Mesoderm induction early response protein 1 (Mi-er1)| (hmi-er1) (Early response 1) (Er1) Length = 536 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 202 QKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKV-AGAVHDRTSDMV 378 ++ ++RL +K R++LS W+++E +F + YGKD+ + A V R+ Sbjct: 292 EEALRRLRFNVKAAREELS----VWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGEC 347 Query: 379 EALY 390 A Y Sbjct: 348 VAFY 351
>MIER1_MOUSE (Q5UAK0) Mesoderm induction early response protein 1 (Mi-er1)| Length = 556 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 202 QKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKV-AGAVHDRTSDMV 378 ++ ++RL +K R++LS W+++E +F + YGKD+ + A V R+ Sbjct: 312 EEALRRLRFNVKAAREELS----VWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGEC 367 Query: 379 EALY 390 A Y Sbjct: 368 VAFY 371
>MIER1_XENLA (Q7T105) Mesoderm induction early response protein 1 (Mi-er1)| (Xmi-er1) (Early response 1) (Er1) Length = 495 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 202 QKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKV-AGAVHDRTSDMV 378 ++ ++RL +K R++LS W+++E +F + YGKD+ + A V R+ Sbjct: 259 EEALRRLRFNVKAAREELS----VWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGEC 314 Query: 379 EALY 390 A Y Sbjct: 315 VAFY 318
>MIER1_PONPY (Q5REE1) Mesoderm induction early response protein 1 (Mi-er1)| Length = 512 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 202 QKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKV-AGAVHDRTSDMV 378 ++ ++RL +K R++LS W+++E +F + YGKD+ + A V R+ Sbjct: 268 EEALRRLRFNVKAAREELS----VWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGEC 323 Query: 379 EALY 390 A Y Sbjct: 324 VAFY 327
>MIER1_CHICK (Q5ZKT9) Mesoderm induction early response protein 1 (Mi-er1)| Length = 513 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 202 QKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKV-AGAVHDRTSDMV 378 ++ ++RL +K R++LS W+++E +F + YGKD+ + A V R+ Sbjct: 270 EESLRRLRFNVKAAREELS----VWTEEECRNFEQGLKVYGKDFHVIQANKVRTRSVGEC 325 Query: 379 EALY 390 A Y Sbjct: 326 VAFY 329
>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing| protein 1) Length = 832 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 271 QWSKDELEHFYGAYRKYGKDWRKVAGAVHDRT 366 +W+ +E E F KYG+ W K+A + RT Sbjct: 121 KWTSEEKELFEQGLVKYGRRWTKIAKLIGSRT 152
>RCOR2_BRARE (Q6P116) REST corepressor 2| Length = 536 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +1 Query: 244 RKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 390 R+ + S+W+ +E A R+YGKD+ +A + ++T V + + Sbjct: 323 REPNQKINSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSSFF 371
>RCOR2_RAT (Q5FWT8) REST corepressor 2| Length = 523 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 268 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 390 S+W+ DE A R+YGKD+ +A + ++T V+ + Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFF 370
>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)| Length = 523 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 268 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 390 S+W+ DE A R+YGKD+ +A + ++T V+ + Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFF 370
>RCOR2_HUMAN (Q8IZ40) REST corepressor 2| Length = 523 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 268 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 390 S+W+ DE A R+YGKD+ +A + ++T V+ + Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFF 370
>SC6A4_DROME (P51905) Sodium-dependent serotonin transporter (5HT transporter)| (5HTT) (Cocaine-sensitive serotonin transporter) (dSERT1) Length = 622 Score = 29.6 bits (65), Expect = 4.5 Identities = 11/42 (26%), Positives = 20/42 (47%) Frame = -1 Query: 236 FIFMYNRCILFWPIFINFGIALVNISHFSCGRHWKSQNCLAV 111 ++ MY I+ W ++ F + SC W ++NC+ V Sbjct: 166 YMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQV 207
>MYSM1_HUMAN (Q5VVJ2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing| protein 1) Length = 828 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Frame = +1 Query: 142 LPQEK*EMLTSAMPKLMKIGQKRMQRLYIKIKCERKKL--------SDLGSQWSKDELEH 297 L +E+ + + P+ + + QK + Y+K + K+ + +W+ +E E Sbjct: 69 LLEEEYYLSKKSQPEKVWLDQKEDDKKYMKSLQKTAKIMVHSPTKPASYSVKWTIEEKEL 128 Query: 298 FYGAYRKYGKDWRKVAGAVHDRT 366 F K+G+ W K++ + RT Sbjct: 129 FEQGLAKFGRRWTKISKLIGSRT 151
>MYB_DROME (P04197) Myb protein| Length = 657 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +1 Query: 193 KIGQKRMQRLYIKIKCERKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 372 +IG++ +R + + KK + W++ E E Y A+ + G W K+A + RT + Sbjct: 169 RIGKQCRERWHNHLNPNIKKTA-----WTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDN 223 Query: 373 MVE 381 ++ Sbjct: 224 AIK 226
>V362_ASFB7 (P23166) K'362 protein| Length = 362 Score = 29.3 bits (64), Expect = 5.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 283 DELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVE 381 + +++FY YR + KDWR + G + SD+ E Sbjct: 194 EAIQYFYQRYRHF-KDWRLICGLSFNNVSDLHE 225
>CLPB2_SYNEL (Q8DG71) Chaperone clpB 2| Length = 887 Score = 28.9 bits (63), Expect = 7.7 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%) Frame = +1 Query: 196 IGQKRM-QRLYIKIKCERKKLSDL-----GSQWSKDEL-EHFYGAYRKYGKDWRKVA 345 +G +R+ QRL+ + C+R++L+ G+Q D+ E+ Y A KYG+D + A Sbjct: 117 VGDRRIGQRLFRALNCDRQQLAATVKAIRGAQKVLDQNPENKYAALEKYGRDLTEAA 173
>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor| Length = 532 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +2 Query: 323 EKIGGRWLVRSMIEHLIWWRLFTHE*----GIFISSRGNCYGCRVDSDDDRSLNILDGS 487 E GRW+V E+ W+ E G+ +S + YG + D D LN+ +G+ Sbjct: 37 EPFDGRWVVSEKAEYQGVWKHEKSEGHDDYGLLVSEKAKKYGIVKELDVDEPLNLNEGT 95
>RCOR_DROME (Q59E36) REST corepressor (CoREST)| Length = 657 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +1 Query: 262 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 390 + ++W DE++ A R+YGK++ +A V +T V Y Sbjct: 370 ISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFY 412 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,987,204 Number of Sequences: 219361 Number of extensions: 1185410 Number of successful extensions: 3390 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3329 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3390 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
