ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30e09 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 100 bits (250), Expect = 1e-21 Identities = 47/85 (55%), Positives = 65/85 (76%) Frame = +1 Query: 196 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 375 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F +EATE FFA T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRL 76 Query: 376 FQSKDAGLRRMVYLMIKELSPSADE 450 FQS D LRRM YL IKE++ +++ Sbjct: 77 FQSNDQTLRRMCYLTIKEMATISED 101
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 100 bits (249), Expect = 2e-21 Identities = 47/85 (55%), Positives = 64/85 (75%) Frame = +1 Query: 196 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 375 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F EATE FFA T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRL 76 Query: 376 FQSKDAGLRRMVYLMIKELSPSADE 450 FQS D LRRM YL IKE++ +++ Sbjct: 77 FQSNDQTLRRMCYLTIKEMATISED 101
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 99.8 bits (247), Expect = 3e-21 Identities = 48/85 (56%), Positives = 63/85 (74%) Frame = +1 Query: 196 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 375 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE FFA TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 376 FQSKDAGLRRMVYLMIKELSPSADE 450 FQS D LRRM YL IKE+S A++ Sbjct: 77 FQSNDPTLRRMCYLTIKEMSCIAED 101
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 99.8 bits (247), Expect = 3e-21 Identities = 48/85 (56%), Positives = 63/85 (74%) Frame = +1 Query: 196 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 375 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE FFA TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 376 FQSKDAGLRRMVYLMIKELSPSADE 450 FQS D LRRM YL IKE+S A++ Sbjct: 77 FQSNDPTLRRMCYLTIKEMSCIAED 101
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 95.5 bits (236), Expect = 5e-20 Identities = 41/80 (51%), Positives = 63/80 (78%) Frame = +1 Query: 211 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 390 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ QG++ + EATE FF TKL+QSKD Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRTEATEAFFGVTKLWQSKD 77 Query: 391 AGLRRMVYLMIKELSPSADE 450 LRRMVYL +KEL+ +D+ Sbjct: 78 VSLRRMVYLAVKELAEVSDD 97
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 73.6 bits (179), Expect = 2e-13 Identities = 35/85 (41%), Positives = 56/85 (65%) Frame = +1 Query: 196 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 375 S F + + V Q+AR F+ + R+ ++++K+ YL+ G+ F + +ATE+FF TKL Sbjct: 13 SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATELFFGITKL 72 Query: 376 FQSKDAGLRRMVYLMIKELSPSADE 450 FQ KD LR+ VY++IKELS A++ Sbjct: 73 FQHKDPSLRQFVYIIIKELSVVAED 97
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 63.5 bits (153), Expect = 2e-10 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 1/80 (1%) Frame = +1 Query: 214 EKGAVLQEA-RVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 390 +K + Q+ F++ ++++RC +I++LL LL QG+TF + EAT +FF+ +KLFQ ++ Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQN 78 Query: 391 AGLRRMVYLMIKELSPSADE 450 LR+ VYL IKELS +++ Sbjct: 79 DPLRQAVYLAIKELSGISED 98
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 279 ASPRIKLRVVEDAGLLQDGTLLDAEERR 196 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 279 ASPRIKLRVVEDAGLLQDGTLLDAEERR 196 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MUTS_NEIMB (Q9JX94) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 363 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 202 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>MUTS_NEIMA (Q9JWT7) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 363 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 202 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>MUTS_NEIG1 (Q5F5J4) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 363 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 202 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,424,038 Number of Sequences: 219361 Number of extensions: 999248 Number of successful extensions: 3330 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3324 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
