ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3 25 3.0
2EXBD_SYNY3 (P72942) Putative biopolymer transport exbD protein 29 6.4
3SUVR3_ARATH (Q9SRV2) Histone-lysine N-methyltransferase SUVR3 (E... 28 8.4

>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3|
          Length = 450

 Score = 24.6 bits (52), Expect(2) = 3.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 85  HHPSHPLRIWTTTDHSQRHIRHHIYSRSPLHSTLSAS 195
           H PSHP  +     H Q H   H   R   HS  S++
Sbjct: 101 HAPSHPSHLSHGAPHEQEHA--HEIQRHRAHSAQSSA 135



 Score = 23.9 bits (50), Expect(2) = 3.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 25  PRRDAGDSARRPSVHSIFLYHHPSHP 102
           P R + ++  RP    I  +HH +HP
Sbjct: 39  PNRTSRNTPLRPESTEIETHHHANHP 64



to top

>EXBD_SYNY3 (P72942) Putative biopolymer transport exbD protein|
          Length = 269

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  SARRPSVHSIFL-YHHPSHPLRIWTTTDHSQRHIRHHI 156
           S + P  H  F   +HP+ PL +W    H Q  +R  I
Sbjct: 4   SPKAPKSHRKFQSIYHPTRPLSLWQDNQHDQGEVRIEI 41



to top

>SUVR3_ARATH (Q9SRV2) Histone-lysine N-methyltransferase SUVR3 (EC 2.1.1.43)|
           (Suppressor of variegation 3-9-related protein 3)
           (Su(var)3-9-related protein 3) (Protein SET DOMAIN GROUP
           20)
          Length = 338

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 214 RCLGFLDWRRVWSEVASGCRCGAVC 140
           +CL F     + +E  SGC CG+ C
Sbjct: 156 KCLAFAGMEEIANECGSGCGCGSDC 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,114,402
Number of Sequences: 219361
Number of extensions: 619722
Number of successful extensions: 2143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top