>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 196 KKRNSNQRLAGGAKGP-PQLKNQRSKRPESSKNPIPLHAPAK--KLGTSN*QPGRREGRS 26
           KK  S   L G +K    + K ++SKR E+ K   P+ +P+K    G  N  P RR GRS
Sbjct: 290 KKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRS 349

>SLIK2_HUMAN (Q9H156) SLIT and NTRK-like protein 2 precursor|
          Length = 845

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
 Frame = -2

Query: 337 IWETPLRLYGHT*IDEKYQALRERRPGQDLSLTSSH*PLHGFT*KHRKKRNSNQRLAGGA 158
           + ETP RL+G        Q L  R+   D S   SH   H            N   A  A
Sbjct: 242 VCETPFRLHGKDVTQLTRQDLCPRKSASDSSQRGSHADTHVQRLSPTMNPALNPTRAPKA 301

Query: 157 KGPPQLKNQRSKRPESS--------------KNPIPLHAPAKKLGTS 59
             PP+++N+ + R   S              K+P+PL  P+  + TS
Sbjct: 302 SRPPKMRNRPTPRVTVSKDRQSFGPIMVYQTKSPVPLTCPSSCVCTS 348

>YAM5_SCHPO (Q10060) Hypothetical protein C1F5.05c in chromosome I|
          Length = 151

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -3

Query: 231 TDPFTGSPKNTARSGTATSAWPAEPRDLRSSRISGASGPRARKIPS 94
           T P + +  N A S    S  PA PR L SS  S AS P  R++PS
Sbjct: 61  TSPVSINASNAAPSNLKASYIPANPRRL-SSSTSSASSPPLRRLPS 105

>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
            (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
            (H3-K79-HMTase) (Protein grappa) (DOT1-like protein)
            (dDOT1L)
          Length = 1848

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -2

Query: 139  KNQRSKRPESSKNPIPLHAPAKK 71
            + QRSK  ESS +P PLH+PA K
Sbjct: 1037 QEQRSKAVESSPSPSPLHSPAPK 1059

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 139 KNQRSKRPESSKNPIPLHAPAK--KLGTSN*QPGRREGRS 26
           K ++SKR E  K   P+ +P+K    G  N  P RR GRS
Sbjct: 310 KERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRS 349

>POLS_EEVVE (P36330) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1254

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 205 KHRKKRNSNQRLAGGAKGPPQLKNQRSKRPESSKNPIPLHAPAKKLGTSN*QPGRREGRS 26
           + +KK+N  ++ A    GPP LK Q   + +++K P        KL +    P   EG+ 
Sbjct: 78  QRKKKKNEGKKKA--KTGPPNLKTQNGNKKKTNKKPGKRQRMVMKLESDKTFPIMLEGKI 135

Query: 25  KG 20
            G
Sbjct: 136 NG 137

>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)|
          Length = 674

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 198 ARSGTATSAWPAEPRDLRSSRISGASGPRARKIPSPS 88
           A +G  +S++P EP+ L S   +    P++ ++P PS
Sbjct: 388 ATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPS 424

>EXU1_DROPS (Q24618) Maternal protein exuperantia 1|
          Length = 495

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 196 KKRNSNQRLAGGAKGPPQLKNQRSKRPESSKNPIPLHAPAKKLGTS 59
           +KRN+ +   G AKGP + +      PE  ++P+ +  P     T+
Sbjct: 450 RKRNNTRNGFGSAKGPKKAETLNIAAPEPPQSPVAVSTPVAIAATN 495

>NCOA2_HUMAN (Q15596) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
           intermediary factor 2)
          Length = 1464

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -2

Query: 286 YQALRERRPGQDLSLTSS-H*PLHGFT*KHRKKRNSNQRLAGGAKGPPQLKNQRSKRPES 110
           +QAL    PGQD++L+S+ + P++G     +++        GG+ G   +   ++  P+ 
Sbjct: 405 HQALCSGNPGQDMTLSSNINFPING----PKEQMGMPMGRFGGSGGMNHVSGMQATTPQG 460

Query: 109 SKNPIPLHAPAKKLGTSN*QPGRREGR 29
           S   + +++P++        PG   G+
Sbjct: 461 SNYALKMNSPSQS------SPGMNPGQ 481

>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 163 GAKGPPQLKNQRSKRPESSKNPIPLHAPA 77
           G  GPP+++ +R +R E  + P P  APA
Sbjct: 452 GEAGPPRVQARRRRRTELDRAPTPAPAPA 480

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 163 GAKGPPQLKNQRSKRPESSKNPIPLHAPA 77
           G  GPP+++ +R +R E  + P P  APA
Sbjct: 452 GEAGPPRVQARRRRRTELDRAPTPAPAPA 480

>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)|
          Length = 674

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 198 ARSGTATSAWPAEPRDLRSSRISGASGPRARKIPSPS 88
           A +G  +S++P EP+ L S   +    P++ ++P PS
Sbjct: 388 ATNGRVSSSYPVEPKKLNSPEETTFQTPKSSQMPRPS 424

>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 GASGPRARKIPSPSTRRPKN*VLVTNSRGGERGGARDSLVG 7
           G  G RAR +P P    P+   L+   R G  G   D +VG
Sbjct: 298 GRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVG 338

>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 GASGPRARKIPSPSTRRPKN*VLVTNSRGGERGGARDSLVG 7
           G  G RAR +P P    P+   L+   R G  G   D +VG
Sbjct: 298 GRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVG 338

>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 GASGPRARKIPSPSTRRPKN*VLVTNSRGGERGGARDSLVG 7
           G  G RAR +P P    P+   L+   R G  G   D +VG
Sbjct: 298 GRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVG 338

>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 GASGPRARKIPSPSTRRPKN*VLVTNSRGGERGGARDSLVG 7
           G  G RAR +P P    P+   L+   R G  G   D +VG
Sbjct: 298 GRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVG 338

>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1|
          Length = 396

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -2

Query: 175 RLAGGAKGPPQLKNQ----RSKRPESSKNPIPLHAPAK 74
           R  G ++ PP+ KN+    RSK P S +N  P H+  K
Sbjct: 69  RARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVK 106

>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
           (Williams-Beuren syndrome chromosome region 9 protein)
           (WBRS9) (Williams syndrome transcription factor)
           (hWALP2)
          Length = 1483

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
 Frame = -2

Query: 151 PPQLKNQR-SKRPESS-------KNPIPLHA---------PAKKLGTSN*QPGRREGRSK 23
           P ++KN + SK PE          +P  LH          PAKK G  + +P + +GRSK
Sbjct: 350 PLKVKNSKNSKSPEEHLEEMMKMMSPNKLHTNFHIPKKGPPAKKPGKHSDKPLKAKGRSK 409

Query: 22  GLTGGE 5
           G+  G+
Sbjct: 410 GILNGQ 415

>NCOA2_MOUSE (Q61026) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
           intermediary factor 2) (Glucocorticoid
           receptor-interacting protein 1) (GRIP-1)
          Length = 1462

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -2

Query: 286 YQALRERRPGQDLSLTSS-H*PLHGFT*KHRKKRNSNQRLAGGAKGPPQLKNQRSKRPES 110
           +QAL    PGQD++L S+ + P++G     +++        GG+ G   +   ++  P+ 
Sbjct: 405 HQALCSGNPGQDMTLGSNINFPMNG----PKEQMGMPMGRFGGSGGMNHVSGMQATTPQG 460

Query: 109 SKNPIPLHAPAKKLGTSN*QPGRREGRSKGL 17
           S   + +++P++        PG   G++  +
Sbjct: 461 SNYALKMNSPSQS------SPGMNPGQASSV 485

>EPN1_MOUSE (Q80VP1) Epsin-1 (EPS-15-interacting protein 1)|
           (Intersectin-EH-binding protein 1) (Ibp1)
          Length = 566

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 240 PLLTDPFTGSPKNTARSGTATSAWPAEP 157
           P  +DP+ GSP   + +GTA   +  EP
Sbjct: 364 PAFSDPWGGSPAKPSSNGTAVGGFDTEP 391

>TAU_SPECI (Q6TS35) Microtubule-associated protein tau|
          Length = 429

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 231 TDPFTGSP-KNTARSGTATSAWPAEPRDLRSSRISGASGPRARKIPSPSTRRPKN*VLV 58
           T P TG P K+  RSG ++   P  P           S  R   +P+P TR PK   +V
Sbjct: 169 TPPGTGEPAKSGDRSGYSSPGSPGTP----------GSRSRTPSLPTPPTREPKKVAVV 217

>DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 756

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 216 GSPKNTARSGTATSAWPAEPRDLRSSRISGASG 118
           GS  +T RSG + S  P  P  LR  RIS   G
Sbjct: 319 GSQLSTPRSGKSPSPSPTSPGSLRKQRISQHGG 351

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
 Frame = -3

Query: 441  RRTGSWTASPSPNPVACLSLVGDALTELQDL--VLAKSGRPLSASTGTL--ELMRNIRP* 274
            RR GS++AS SP+P     L   + +  +    +  +   P    TG       R  R  
Sbjct: 881  RREGSYSASRSPHPPPQQRLRRGSYSRSRSRSPIPIRGNGPAGRDTGRAGPAPARGGRRN 940

Query: 273  ESEDQAKI*A*PLLTDPFTGSPKNTARSGTATSAWPAEPRDLRSSRISGASGPRAR-KIP 97
             S  +++  + P L D  TGS +  +RS +         R   SSR    S  R+R +  
Sbjct: 941  RSYSRSRTRSPPPLADAATGSRRVVSRSPSPVVGNNKRRRSYSSSRSRSRSSSRSRYRSR 1000

Query: 96   SPSTRR 79
            SP  +R
Sbjct: 1001 SPVAKR 1006

>EPN1_RAT (O88339) Epsin-1 (EPS-15-interacting protein 1)|
          Length = 575

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 240 PLLTDPFTGSPKNTARSGTATSAWPAEP 157
           P  +DP+ GSP   + +GTA   +  EP
Sbjct: 373 PAFSDPWGGSPAKPSSNGTAVGGFDTEP 400

>DCAK1_RAT (O08875) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
           (Calcium/calmodulin-dependent protein kinase type I-like
           CPG16)
          Length = 433

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 216 GSPKNTARSGTATSAWPAEPRDLRSSRISGASG 118
           GS  +T RSG + S  P  P  LR  RIS   G
Sbjct: 12  GSQLSTPRSGKSPSPSPTSPGSLRKQRISQHGG 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,932,040
Number of Sequences: 219361
Number of extensions: 1442351
Number of successful extensions: 4607
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)