ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30e03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 145 bits (73), Expect = 2e-31 Identities = 103/113 (91%) Strand = Plus / Minus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 300112 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 300060 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 145 bits (73), Expect = 2e-31 Identities = 103/113 (91%) Strand = Plus / Minus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 300112 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 300060 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 145 bits (73), Expect = 2e-31 Identities = 103/113 (91%) Strand = Plus / Plus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 4821 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 4880 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 4881 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 4933 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 4611 ctggatctgacgcggcagctctcgccggctgcct 4644
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 145 bits (73), Expect = 2e-31 Identities = 103/113 (91%) Strand = Plus / Minus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 7490 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 7431 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 7430 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 7378 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 7700 ctggatctgacgcggcagctctcgccggctgcct 7667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 137 bits (69), Expect = 4e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 317077 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 317025 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 137 bits (69), Expect = 4e-29 Identities = 102/113 (90%) Strand = Plus / Plus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 438 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 497 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 498 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 550 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 225 ctggatctgacgcggcagctctcgccggctgcct 258
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 137 bits (69), Expect = 4e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 317077 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 317025 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 137 bits (69), Expect = 4e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 50188 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 50129 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccga 466 || ||||||||||||||||||||||| || || ||| | |||||||||||||| Sbjct: 50128 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccga 50076 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 153 ctggatctggcgcggcagctcccgccggccgcct 186 ||||||||| ||||||||||| ||||||| |||| Sbjct: 50401 ctggatctgacgcggcagctctcgccggctgcct 50368
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 135 bits (68), Expect = 1e-28 Identities = 113/128 (88%) Strand = Plus / Plus Query: 333 gccatggcagggaggcccacggagatcgacgaggacctccacagccgccagctcgccgta 392 ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| Sbjct: 285 gccatggcagggagggggaacgagatcgacgaggacctgcacagccgccagctcgccgtc 344 Query: 393 tacggccgcgagacaatgaagcgtctcttcgcctccaacgtcctcgtatccggactccag 452 || || |||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 345 tatgggcgcgagaccatgaagcgcctcttcggctccaacgtcctcgtctctggactccag 404 Query: 453 ggcctcgg 460 || ||||| Sbjct: 405 ggtctcgg 412 Score = 115 bits (58), Expect = 1e-22 Identities = 134/160 (83%), Gaps = 12/160 (7%) Strand = Plus / Plus Query: 151 cgctggatctggcgcggcagctcccgccggccgcctactactactgcctgcttttcgcgg 210 ||||||||||| |||||||||||||| ||||||| ||||||| ||||||| ||||| | Sbjct: 82 cgctggatctgacgcggcagctcccggcggccgcgtactact---gcctgctcttcgctg 138 Query: 211 cggcgg---------tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagc 261 || ||| |||||||| ||||||||||||||| ||||||||| || ||||||| Sbjct: 139 cgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagc 198 Query: 262 gggagatcgtcgccagcgaggtcgagaaccagcagaagaa 301 |||||||||||||| ||||||||||| || ||||||||| Sbjct: 199 gggagatcgtcgccggcgaggtcgaggacttgcagaagaa 238
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 133 bits (67), Expect = 6e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 354 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 413 ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 401 gagatcgacgaggacctgcacagccgccagctcgccgtctatggccgcgagaccatgaag 460 Query: 414 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 460 | ||||||| ||||||||||||||| || ||||||||||| ||||| Sbjct: 461 ccgctcttcggctccaacgtcctcgtctctggactccagggtctcgg 507 Score = 89.7 bits (45), Expect = 8e-15 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 217 tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagcgggagatcgtcgcca 276 |||||||| |||||| |||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 250 tcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 308 Query: 277 gcgaggtcgagaaccagcagaagaa 301 ||||||||||| || ||||||||| Sbjct: 309 gcgaggtcgaggacttgcagaagaa 333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 10276949 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 10276890 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggact 448 ||| |||||||| |||||||||||||| |||||||| Sbjct: 10276889 ggcggctcttcgcgtccaacgtcctcgtctccggact 10276853 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gaacatcgccaacatttgca 52 |||||||||||||||||||| Sbjct: 26992878 gaacatcgccaacatttgca 26992897
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 138362 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 138303 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggact 448 ||| |||||||| |||||||||||||| |||||||| Sbjct: 138302 ggcggctcttcgcgtccaacgtcctcgtctccggact 138266
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 10275050 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 10274991 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggact 448 ||| |||||||| |||||||||||||| |||||||| Sbjct: 10274990 ggcggctcttcgcgtccaacgtcctcgtctccggact 10274954 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gaacatcgccaacatttgca 52 |||||||||||||||||||| Sbjct: 27084201 gaacatcgccaacatttgca 27084220
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 368 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 427 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggact 448 ||| |||||||| |||||||||||||| |||||||| Sbjct: 428 ggcggctcttcgcgtccaacgtcctcgtctccggact 464
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Plus Query: 353 ggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaa 412 ||||||||||||||||||||||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 317 ggagatcgacgaggacctccacagcaggcagctcgccgtgtacgggagggagaccatgcg 376 Query: 413 gcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaa 467 || |||||||||||| |||||||||| ||||| ||| | || || ||||||||| Sbjct: 377 ccgcctcttcgcctccgacgtcctcgtctccgggctcaacgggcttggcgccgaa 431
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 388 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 460 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 389 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 437
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 29425631 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 29425690 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 460 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 29425691 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 29425739
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 388 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 460 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 389 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 437
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 352 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 411 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 88553 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 88612 Query: 412 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 460 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 88613 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 88661
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 372 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 430 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 355 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 413
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 198 ctgcttttcgcggcggcggtcgg 220 ||||||||||||||||||||||| Sbjct: 272756 ctgcttttcgcggcggcggtcgg 272778
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 372 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 430 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 48502 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 48560
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 372 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 430 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 316 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 374
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 372 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 430 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 232 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 290
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 372 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 430 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 329 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 387
>gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB), and PopD (popD) genes, complete cds Length = 4231 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gcgaggtcgagaaccagcagaagaaa 302 |||| ||||||||||||||||||||| Sbjct: 2515 gcgaagtcgagaaccagcagaagaaa 2540
>gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 of the complete genome Length = 10052 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gcgaggtcgagaaccagcagaagaaa 302 |||| ||||||||||||||||||||| Sbjct: 6919 gcgaagtcgagaaccagcagaagaaa 6944
>gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD genes, complete cds; and ExsC gene, partial cds Length = 2688 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gcgaggtcgagaaccagcagaagaaa 302 |||| ||||||||||||||||||||| Sbjct: 452 gcgaagtcgagaaccagcagaagaaa 477
>gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB) and PopD (popD) genes, complete cds Length = 4168 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gcgaggtcgagaaccagcagaagaaa 302 |||| ||||||||||||||||||||| Sbjct: 2361 gcgaagtcgagaaccagcagaagaaa 2386
>gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxygenase subunit (vanA) and vanillate monooxygenase reductase subunit (vanB) genes, complete cds Length = 2290 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 ccacggagatcgacgaggacc 369 ||||||||||||||||||||| Sbjct: 561 ccacggagatcgacgaggacc 581
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ggagatcgtcgccagcgaggt 283 ||||||||||||||||||||| Sbjct: 5095484 ggagatcgtcgccagcgaggt 5095464
>ref|NM_190755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcggcagctcccgccggccg 183 |||||||||||||||||||| Sbjct: 141 gcggcagctcccgccggccg 160
>gb|AC158918.7| Mus musculus chromosome 15, clone RP23-106N12, complete sequence Length = 209747 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 attctctcatcttcctcata 93 |||||||||||||||||||| Sbjct: 89730 attctctcatcttcctcata 89711
>emb|CR706170.3|CNS0G7TY Tetraodon nigroviridis full-length cDNA Length = 447 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cctccacagccgccagctcg 387 |||||||||||||||||||| Sbjct: 23 cctccacagccgccagctcg 42
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cctgcttttcgcggcggcggtcgg 220 ||||||| |||||||||||||||| Sbjct: 3214943 cctgcttctcgcggcggcggtcgg 3214920
>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor Length = 2674 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gcctgcttttcgcggcggcg 215 |||||||||||||||||||| Sbjct: 2429 gcctgcttttcgcggcggcg 2410
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 tggcagggaggcccacggagatcg 360 |||||||| ||||||||||||||| Sbjct: 3995320 tggcagggcggcccacggagatcg 3995297
>gb|AC084388.1| Mus musculus clone RP23-132G6, complete sequence Length = 208754 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 attctctcatcttcctcata 93 |||||||||||||||||||| Sbjct: 185563 attctctcatcttcctcata 185544
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cctgcttttcgcggcggcggtcgg 220 ||||||| |||||||||||||||| Sbjct: 4599415 cctgcttctcgcggcggcggtcgg 4599392
>gb|AC107751.11| Mus musculus chromosome 15, clone RP23-244L21, complete sequence Length = 188768 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 attctctcatcttcctcata 93 |||||||||||||||||||| Sbjct: 63649 attctctcatcttcctcata 63668
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gacgccgacgacgccatggc 334 |||||||||||||||||||| Sbjct: 22103919 gacgccgacgacgccatggc 22103900
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ccccgctgacgccgacgacg 327 |||||||||||||||||||| Sbjct: 13170622 ccccgctgacgccgacgacg 13170603
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gaacatcgccaacatttgca 52 |||||||||||||||||||| Sbjct: 66521 gaacatcgccaacatttgca 66502
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cggtcgggctcatcggcggc 233 |||||||||||||||||||| Sbjct: 2968702 cggtcgggctcatcggcggc 2968683
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ctgcttttcgcggcggcggt 217 |||||||||||||||||||| Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ccccgctgacgccgacgacg 327 |||||||||||||||||||| Sbjct: 87810 ccccgctgacgccgacgacg 87791
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1117_F10 Length = 169948 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gacgccgacgacgccatggc 334 |||||||||||||||||||| Sbjct: 66882 gacgccgacgacgccatggc 66863
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 gcctcggcgccgaatcgcaa 473 |||||||||||||||||||| Sbjct: 107281 gcctcggcgccgaatcgcaa 107300 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,119,219 Number of Sequences: 3902068 Number of extensions: 3119219 Number of successful extensions: 67314 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66037 Number of HSP's gapped (non-prelim): 1271 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
