>ELOA1_DROME (Q9VCP0) Transcription elongation factor B polypeptide 3 (RNA|
           polymerase II transcription factor SIII subunit A)
           (Elongin A) (dEloA)
          Length = 643

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 18/90 (20%), Positives = 40/90 (44%)
 Frame = +1

Query: 4   YAVFQEHVKSSQDENHTGQPGVADASFDAISKEDLAILQRIVRKRKVKKEYSAEKKGGNN 183
           +A   +H +SS   +H+     +D    +   +      +    +K  KE+  +K  G +
Sbjct: 133 HAKSTKHERSSSSRSHSKSRSDSDKKHKSSRHDKSKDRDKDREGQKEAKEHKEKKSNGEH 192

Query: 184 RSRNSKGTAASISSINKYQNNKEKVNAKHQ 273
           +S++S  +++S  S     +  E   +KH+
Sbjct: 193 KSKDSSKSSSSHKSSKSESHKSEHTKSKHE 222

>ZO84_XENLA (P18753) Oocyte zinc finger protein XLCOF8.4 (Fragment)|
          Length = 780

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 22/89 (24%), Positives = 35/89 (39%)
 Frame = +3

Query: 24  REKFTG*EPYRSTRCCRCFL*CHIKRGSSNTTENCAEKKGQKRIFC*EKGREQQKQELKR 203
           R   TG +PY  + C RCF        SS  T +     G+K   C E G+   ++    
Sbjct: 693 RRTHTGEKPYSCSECGRCF------PTSSVLTSHWRTHTGEKPFSCTECGKCFSRETY-- 744

Query: 204 YRC*YKFYKQVSEQQREGKCQASGMCTSC 290
                K++ +    ++   C   G C +C
Sbjct: 745 ----LKYHHRTHTGEKPFSCSECGKCFTC 769

>RRS1_CAEEL (Q9XVT0) Ribosome biogenesis regulatory protein homolog|
          Length = 333

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
 Frame = +1

Query: 13  FQEHVKSSQDENHTGQPGVADASFDAISKED---LAILQRI-VRKRKVKKEYSA------ 162
           FQE +K  +    TG+    +A+   +S E    L ILQR+  +K K+ +E +A      
Sbjct: 219 FQEGLKGEKANVKTGKKRKFEANEAPVSGEKERALQILQRMKSKKAKIVEEKAAAVAGPL 278

Query: 163 -EKKGGNNRSRNSKGTAASISSINKYQNNKEKVNAKHQG 276
            EKK  + R + +K      S I++ Q  K KV+ K +G
Sbjct: 279 REKKEKSER-KGAKDQTRQKSQIHRQQWFKNKVDGKKKG 316

>ST14_MOUSE (P56677) Suppressor of tumorigenicity protein 14 (EC 3.4.21.-)|
           (Serine protease 14) (Epithin)
          Length = 855

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 175 GNNRSRNSKGTAASISSINKYQNNKEKVNAKHQGCALLVRGSARNMEGMGNYVPYKW 345
           G+NR R + G +    +  KY +  E +N   +G   L   +A+ +E  G   P +W
Sbjct: 2   GSNRGRKAGGGSQDFGAGLKYNSRLENMNGFEEGVEFLPANNAKKVEKRG---PRRW 55

>ZN160_HUMAN (Q14589) Zinc finger protein 160 (HZF5) (Fragment)|
          Length = 169

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 24  REKFTG*EPYRSTRCCRCFL*CHIKRGSSNTTENCAEKKGQKRIFC*EKGR 176
           R   TG +PYR T C + F      R  S+ T + A   G+KR  C E G+
Sbjct: 68  RRIHTGEKPYRCTECGKAF------RVRSSLTTHMAIHTGEKRYKCNECGK 112

>SWC4_YARLI (Q6C9M6) SWR1-complex protein 4|
          Length = 504

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +1

Query: 52  TGQPGVADASFDAISKEDLAILQRIVRKRKVKKEYSAEKKGGNNRSRNSKGTAASISSIN 231
           TG+   A+ +   + +ED  +    V++ K  K+ S ++K     S    GTA ++  + 
Sbjct: 180 TGETKGAEGTESKVKEEDKDVEMADVKEEKENKDESNKEKSEKKESAPPDGTARTVEDLK 239

Query: 232 KYQNNKEKVNAKH 270
           +   N     +KH
Sbjct: 240 ERFYNVVSAMSKH 252

>MEX2_JACME (P84347) Chymomexicain (EC 3.4.22.-)|
          Length = 215

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 145 KKEYSAEKKGGNNRSRNSKGTAASISSINKYQNNKE 252
           +KEY  EKK G  R++  KGT   I+   +   N E
Sbjct: 84  EKEYPYEKKQGKCRAKEKKGTKVQITGYKRVPANDE 119

>VPS41_ARATH (P93043) Vacuolar assembly protein VPS41 homolog|
          Length = 976

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 190 RNSKGTAASISSINKYQNNKEKVNAKHQGCALLVRGSARNMEGMGNYVPYKWKRTVLSWM 369
           + SK   A   + + Y N+K+    K Q C  ++        G G     KW+ ++++W 
Sbjct: 140 KQSKRFVAGGLAGHLYMNSKKWFGNKDQVCENVLHS------GEGPIHSVKWRGSLIAWA 193

Query: 370 IDLGV----VSQDAKVXYMNKKGNS 432
            D+GV     ++D +V ++ K   S
Sbjct: 194 NDVGVKVYDTAKDQRVTFIEKPRGS 218

>KR18_HUMAN (Q9HCG1) Zinc finger protein Kr18 (HKr18)|
          Length = 818

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 24  REKFTG*EPYRSTRCCRCFL*CHIKRGSSNTTENCAEKKGQKRIFC*EKGR 176
           R   TG +PYR T C + F      R  S+ T + A   G+KR  C E G+
Sbjct: 752 RRIHTGEKPYRCTECGKAF------RVRSSLTTHMAIHTGEKRYKCNECGK 796

>ZG58_XENLA (P18730) Gastrula zinc finger protein XLCGF58.1 (Fragment)|
          Length = 420

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 36  TG*EPYRSTRCCRCFL*CHIKRGSSNTTENCAEKKGQKRIFC*EKGRE-QQKQELKRYR 209
           TG +PY+ T C +CF      R   + T +     G K   C E G+E   K  L++++
Sbjct: 197 TGEKPYKCTECGKCF------RFKGHLTSHMKIHSGIKAFICTECGKEFTHKYSLRKHQ 249

>MPP10_SCHPO (O13910) U3 small nucleolar ribonucleoprotein protein mpp10|
          Length = 598

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 20/76 (26%), Positives = 40/76 (52%)
 Frame = +1

Query: 7   AVFQEHVKSSQDENHTGQPGVADASFDAISKEDLAILQRIVRKRKVKKEYSAEKKGGNNR 186
           A+  + V    +EN  G+      S  AIS  ++   Q+  R+R+V+++++ ++K    +
Sbjct: 493 ALAPQEVYKPSNENREGE--TITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEK 550

Query: 187 SRNSKGTAASISSINK 234
            RNS GT   +  ++K
Sbjct: 551 RRNS-GTEQVVRQLSK 565

>YQHM_BACSU (P54511) Hypothetical protein yqhM|
          Length = 278

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 133 SAQFSVVLLDPLLIWHQRKHLQHLVDLYGSHPVNFS 26
           S  F++ L + LL WH  K +  ++  YG +P   S
Sbjct: 15  SPAFNMALDEALLYWHSEKKIPPVIRFYGWNPATLS 50

>SEN1_YEAST (Q00416) Helicase SEN1 (EC 3.6.1.-) (tRNA-splicing endonuclease|
            positive effector)
          Length = 2231

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +1

Query: 4    YAVFQEHVKSSQDENHTGQPGVADASFDAISKEDLAILQRIVRKRKVKKEYSAEKKGGNN 183
            Y +  E++    DE  + +        D   + D A+ ++   K+K KK+  A+ K  NN
Sbjct: 1887 YKLPMEYITQGPDEVKSNKDTKKRRVVDEGEEADKAVKKKKKEKKKEKKKSKADDKKKNN 1946

Query: 184  RSRNSKGTAA 213
            +   S  T++
Sbjct: 1947 KKAESPSTSS 1956

>SURF6_DROME (Q9VDS6) Surfeit locus protein 6 homolog|
          Length = 324

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +1

Query: 97  KEDLAILQRIVRKRKVKKEYSAEK------KGGNNRSRNSKGTAASISSINKYQNNKEKV 258
           K+D  +LQ+ ++KR+V+K+ S  K      K  +++ +  K    ++   +K + N++  
Sbjct: 253 KDDTKLLQKAIKKRRVEKKKSKTKWTERKQKVEHDKEKRQKKRQENLEKRSKDKKNRKLK 312

Query: 259 NAKHQG 276
            A  +G
Sbjct: 313 TASKRG 318

>P_MOUSE (Q62052) P protein (Melanocyte-specific transporter protein)|
           (Pink-eyed dilution protein)
          Length = 833

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 385 PPPDLSSTIKPSFSIY-MEHSYPCLPYYEHYHGQEVHIPD 269
           P P    T+KP+ S Y +  + PC+PY     G+ V +P+
Sbjct: 31  PDPGRLLTVKPATSNYKLGQADPCIPYAGEAAGKSVCVPE 70

>NOC3L_DROME (Q9VI82) Nucleolar complex protein 3 homolog (NOC3 protein homolog)|
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 822

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 37  QDENHTGQPGVADASFDAISKEDLAILQRIVRKRKVKKEYSAEKKGGNNRSRNSKGTAAS 216
           +++N  G   + +   D +  +DLA+LQ   RKRK K     +   G      S G   +
Sbjct: 78  EEDNEDGDDEMLENVADMLDGDDLALLQANKRKRKAKTTGENDPDQG-----QSIGLERA 132

Query: 217 ISSINKYQNNKEKV 258
            +S  K + + +K+
Sbjct: 133 YASDTKKEQDAQKI 146

>KAT1_ARATH (Q39128) Potassium channel KAT1|
          Length = 677

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +1

Query: 76  ASFDAISKEDLAILQRIVRKRKV---KKEYSAEKKGGNNRSRNSKGTAASISSINK 234
           A  DAI KED  ++++I++++K+   K E S+ +  G + + +S       SS N+
Sbjct: 546 ALMDAIHKEDTEMVKKILKEQKIERAKVERSSSETAGRSYANDSSKKDPYCSSSNQ 601

>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 115 LQRIVRKRKVKKEYSAEKKGGNNRSRNSK 201
           +QR +RK  ++K Y   KKGGN+   N K
Sbjct: 676 IQRFLRKTAMRKYYYEVKKGGNDALVNKK 704

>KAD_GLOVI (Q7NKT5) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 220

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 403 PSHLVKPPPDLSSTIKPSFSIYMEHSYPCLPYYE 302
           PS LV+ P D    +    ++Y E + P + YY+
Sbjct: 161 PSELVQRPDDTLEVVSKRLNVYRESTEPLIRYYQ 194

>AP1_KLULA (P56095) AP-1-like transcription factor|
          Length = 583

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 97  KEDLAILQRIVRKRKVKKEYSAEKKGGNNRSRNSKGTAASISSIN 231
           K D  +L  + ++RK   + + +     N++ NSK ++ +ISS N
Sbjct: 121 KRDSILLDYLAKQRKASIDSNPDFSAAANKAANSKDSSTAISSSN 165

>ST14_HUMAN (Q9Y5Y6) Suppressor of tumorigenicity protein 14 (EC 3.4.21.-)|
           (Serine protease 14) (Matriptase) (Membrane-type serine
           protease 1) (MT-SP1) (Prostamin) (Serine protease
           TADG-15) (Tumor-associated differentially-expressed gene
           15 protein)
          Length = 855

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 175 GNNRSRNSKGTAASISSINKYQNNKEKVNAKHQGCALLVRGSARNMEGMGNYVPYKW 345
           G++R+R   G      +  KY +  EKVN   +G   L   + + +E  G   P +W
Sbjct: 2   GSDRARKGGGGPKDFGAGLKYNSRHEKVNGLEEGVEFLPVNNVKKVEKHG---PGRW 55

>RFC1_HUMAN (P35251) Activator 1 140 kDa subunit (Replication factor C large|
           subunit) (A1 140 kDa subunit) (RF-C 140 kDa subunit)
           (Activator 1 large subunit) (DNA-binding protein PO-GA)
          Length = 1148

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/82 (20%), Positives = 37/82 (45%)
 Frame = +1

Query: 16  QEHVKSSQDENHTGQPGVADASFDAISKEDLAILQRIVRKRKVKKEYSAEKKGGNNRSRN 195
           Q+H KSS D+        A +    + +++ +  + I      +KE + + KG     + 
Sbjct: 297 QQHSKSSADKIGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKENAIKLKGETKTPKK 356

Query: 196 SKGTAASISSINKYQNNKEKVN 261
           +K + A   S++   + K++ N
Sbjct: 357 TKSSPAKKESVSPEDSEKKRTN 378

>Y563_MYCLE (Q9CCP0) UPF0042 protein ML0563|
          Length = 298

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +1

Query: 298 SARNMEGMGNYVPYKWKRTVLSWMIDLGV-----VSQDAKVXYMNKKGNSGILD 444
           +A+ +E +G YV       +++WM+D G+     ++Q A V  +  +G +G LD
Sbjct: 30  AAKVLEDLGWYVADNLPPQLITWMVDFGLAAGSRITQLAVVMDVRSRGFTGDLD 83

>VPS52_RAT (O55166) Vacuolar protein sorting protein 52 (SAC2 suppressor of|
           actin mutations 2-like protein)
          Length = 723

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 280 ALLVRGSARNMEGMGNYVPYKWKRTVLSWMIDLGVVSQDAKVXYMNKKGNSGILDGRITR 459
           AL+ RG A  + G    V    +    SW   +  +SQD    + N +  + I+ G +T+
Sbjct: 621 ALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQ 680

>VPS52_MOUSE (Q8C754) Vacuolar protein sorting protein 52|
          Length = 723

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 280 ALLVRGSARNMEGMGNYVPYKWKRTVLSWMIDLGVVSQDAKVXYMNKKGNSGILDGRITR 459
           AL+ RG A  + G    V    +    SW   +  +SQD    + N +  + I+ G +T+
Sbjct: 621 ALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQ 680

>CAF1A_HUMAN (Q13111) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 938

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 13  FQEHVKSSQDENHTGQPGVADASF--DAISKEDLAILQRIVRKRKVKKEYSAEKK 171
           FQEH +     NHTG P     ++       ED AI  +   KR + +    EK+
Sbjct: 739 FQEHCRRGLLSNHTGSPRTPSTTYLHTPTPSEDAAIPSKSRLKRLISENSVYEKR 793


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,149,534
Number of Sequences: 219361
Number of extensions: 1408117
Number of successful extensions: 3210
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3205
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)