>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                       
Query: 424   atgattgatgatgaggctaac-ttggcgacatcactaatgcc 464
             |||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 37598 atgattgatgatgaggctgactttggcaacatcactgatgcc 37557

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                          
Query: 424      atgattgatgatgaggctaac-ttggcgacatcactaatgcc 464
                |||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 35036697 atgattgatgatgaggctgactttggcaacatcactgatgcc 35036656

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                          
Query: 424      atgattgatgatgaggctaac-ttggcgacatcactaatgcc 464
                |||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 35126769 atgattgatgatgaggctgactttggcaacatcactgatgcc 35126728

>ref|XM_234921.3| PREDICTED: Rattus norvegicus ring finger (C3HC4 type) and KH domain
           containing 1 (predicted) (Rkhd1_predicted), mRNA
          Length = 2971

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 389 aacagcttcttggaggccacaa 410
           ||||||||||||||||||||||
Sbjct: 200 aacagcttcttggaggccacaa 179

>emb|AL772270.24| Mouse DNA sequence from clone RP23-272I16 on chromosome 4, complete
             sequence
          Length = 146140

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 255   cccccctcctctcttcccaatc 276
             ||||||||||||||||||||||
Sbjct: 76454 cccccctcctctcttcccaatc 76475

>gb|AC134611.4| Mus musculus BAC clone RP23-98D8 from chromosome 15, complete sequence
          Length = 198894

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 258   ccctcctctcttcccaatcctctac 282
             |||||||||||||| ||||||||||
Sbjct: 20091 ccctcctctcttccaaatcctctac 20115

>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence
          Length = 146836

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    cccctcctctcttcccaatcc 277
              |||||||||||||||||||||
Sbjct: 109324 cccctcctctcttcccaatcc 109304

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 257     cccctcctctcttcccaatcc 277
               |||||||||||||||||||||
Sbjct: 2782548 cccctcctctcttcccaatcc 2782528

>gb|AC173113.4| Mus musculus BAC clone RP23-120D6 from chromosome 3, complete sequence
          Length = 172004

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   cccccctcctctcttcccaat 275
             |||||||||||||||||||||
Sbjct: 50893 cccccctcctctcttcccaat 50873

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 257     cccctcctctcttcccaatcc 277
               |||||||||||||||||||||
Sbjct: 2782499 cccctcctctcttcccaatcc 2782479

>emb|CT033762.9| Mouse DNA sequence from clone RP24-144L17 on chromosome 14, complete
             sequence
          Length = 114799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   gctgctgcccccctcctctct 268
             |||||||||||||||||||||
Sbjct: 29844 gctgctgcccccctcctctct 29824

>gb|AC135289.3| Mus musculus BAC clone RP23-279D12 from 3, complete sequence
          Length = 180967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   cccccctcctctcttcccaat 275
             |||||||||||||||||||||
Sbjct: 45766 cccccctcctctcttcccaat 45786

>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete
              sequence
          Length = 173254

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    cccctcctctcttcccaatcc 277
              |||||||||||||||||||||
Sbjct: 171944 cccctcctctcttcccaatcc 171924

>emb|AL807779.12| Mouse DNA sequence from clone RP23-82E21 on chromosome X, complete
           sequence
          Length = 202297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 cccctcctctcttcccaatcc 277
           |||||||||||||||||||||
Sbjct: 690 cccctcctctcttcccaatcc 670

>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete
             sequence
          Length = 144239

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 258   ccctcctctcttcccaatcctctac 282
             |||||||||||||||||||| ||||
Sbjct: 23847 ccctcctctcttcccaatcccctac 23871

>gb|AC129014.4| Mus musculus BAC clone RP24-317F20 from chromosome 19, complete
             sequence
          Length = 175855

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gctgctgcccccctcctctc 267
             ||||||||||||||||||||
Sbjct: 77693 gctgctgcccccctcctctc 77674

>gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome 6, complete sequence
          Length = 146418

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 255    cccccctcctctcttcccaatcct 278
              |||||||||| |||||||||||||
Sbjct: 108266 cccccctcctgtcttcccaatcct 108289

>gb|AC125234.4| Mus musculus BAC clone RP23-14K16 from 13, complete sequence
          Length = 209715

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ccctcctctcttcccaatcc 277
             ||||||||||||||||||||
Sbjct: 43377 ccctcctctcttcccaatcc 43358

>gb|AC100209.13| Mus musculus chromosome 13, clone RP23-59L9, complete sequence
          Length = 215769

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ccctcctctcttcccaatcc 277
             ||||||||||||||||||||
Sbjct: 50204 ccctcctctcttcccaatcc 50223

>ref|XM_792061.1| PREDICTED: Strongylocentrotus purpuratus similar to TBC1 domain
           family, member 10B (LOC592544), partial mRNA
          Length = 498

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 416 ggttggacatgattgatgat 435
           ||||||||||||||||||||
Sbjct: 338 ggttggacatgattgatgat 357

>gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, complete sequence
          Length = 209109

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ccctcctctcttcccaatcc 277
             ||||||||||||||||||||
Sbjct: 32279 ccctcctctcttcccaatcc 32260

>gb|AC153135.5| Mus musculus BAC clone RP24-181M6 from chromosome 13, complete sequence
          Length = 164002

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ccctcctctcttcccaatcc 277
             ||||||||||||||||||||
Sbjct: 38117 ccctcctctcttcccaatcc 38098

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     cccagtctgtgcttctccgc 249
               ||||||||||||||||||||
Sbjct: 1952356 cccagtctgtgcttctccgc 1952337

>gb|AC008632.6|AC008632 Homo sapiens chromosome 5 clone CTB-164N12, complete sequence
          Length = 112687

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 250  tgctgcccccctcctctcttccca 273
            |||||||||||||| |||||||||
Sbjct: 5866 tgctgcccccctcccctcttccca 5843

>gb|AC008663.6|AC008663 Homo sapiens chromosome 5 clone CTB-33O18, complete sequence
          Length = 142859

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 250   tgctgcccccctcctctcttccca 273
             |||||||||||||| |||||||||
Sbjct: 78508 tgctgcccccctcccctcttccca 78485

>gb|AC151730.5| Mus musculus BAC clone RP24-84E18 from chromosome 19, complete sequence
          Length = 222459

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gctgctgcccccctcctctc 267
             ||||||||||||||||||||
Sbjct: 21722 gctgctgcccccctcctctc 21703

>gb|AC100791.15| Homo sapiens chromosome 17, clone RP11-353N14, complete sequence
          Length = 215313

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ccctcctctcttcccaatcc 277
              ||||||||||||||||||||
Sbjct: 132708 ccctcctctcttcccaatcc 132689

>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence
          Length = 215914

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   cccccctcctctcttcccaatcct 278
             |||||||||| |||||||||||||
Sbjct: 43651 cccccctcctgtcttcccaatcct 43674

>gb|L26406.1|MTBFRA Methylobacterium extorquens mau gene cluster, methylamine
            dehydrogenase large and small subunits, and amicyanin,
            (mauFBEDACJGLMN) genes, complete cds
          Length = 9441

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   gtgcgaaggcaaccgcgttgaggt 76
            ||||||||||||| ||||||||||
Sbjct: 5901 gtgcgaaggcaacggcgttgaggt 5878

>emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chromosome X, complete
             sequence
          Length = 213401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ccctcctctcttcccaatcc 277
             ||||||||||||||||||||
Sbjct: 98009 ccctcctctcttcccaatcc 97990

>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete
              sequence
          Length = 207814

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    cccctcctctcttcccaatcctct 280
              ||||||||| ||||||||||||||
Sbjct: 104961 cccctcctcccttcccaatcctct 104984

>gb|AC124634.24| Mus musculus chromosome 18, clone RP23-450K16, complete sequence
          Length = 178989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    gcccccctcctctcttccca 273
              ||||||||||||||||||||
Sbjct: 133938 gcccccctcctctcttccca 133919


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,961,381
Number of Sequences: 3902068
Number of extensions: 2961381
Number of successful extensions: 68571
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 68395
Number of HSP's gapped (non-prelim): 179
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)